gentoo resync : 18.03.2018

16 files changed, 41 insertions, 28 deletions

diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 04b09ff33335..32dc5b8227b9 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3 b/metadata/md5-cache/sci-biology/abyss-2.0.3
new file mode 100644
index 000000000000..b497d0f24839
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/abyss-2.0.3
@@ -0,0 +1,13 @@
+DEFINED_PHASES=configure prepare pretend setup
+DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi ) misc-haskell? ( dev-lang/ghc ) >=app-portage/elt-patches-20170422 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.16:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
+EAPI=6
+HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/abyss/
+IUSE=+mpi openmp misc-haskell
+KEYWORDS=~amd64 ~x86
+LICENSE=abyss
+RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= virtual/libffi:0= ) mpi? ( sys-cluster/openmpi )
+SLOT=0
+SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz
+_eclasses_=autotools	4842e626555a9a4344f34cef2e190b67	libtool	0081a71a261724730ec4c248494f044d	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9
+_md5_=4c70cbdf60d5dc2d564272b103f2b469
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.1 b/metadata/md5-cache/sci-biology/bamtools-2.5.1
index 3a160d953891..7bec9418afa2 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.1
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= virtual/pkgconfig sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= virtual/pkgconfig sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=A programmer's API and an end-user's toolkit for handling BAM files
 EAPI=6
 HOMEPAGE=https://github.com/pezmaster31/bamtools
@@ -9,5 +9,5 @@ LICENSE=MIT
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/2.5.1
 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz -> bamtools-2.5.1.tar.gz
-_eclasses_=cmake-utils	5af1e1540847474085b8af891dc0793c	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=2f7d6b2856395f0920d7b682b6bbad56
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index e2d6839db09e..7a67ab00264c 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare setup test unpack
-DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= virtual/pkgconfig sys-devel/make >=dev-util/cmake-3.7.2 >=dev-vcs/git-1.8.2.1
+DEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= virtual/pkgconfig sys-devel/make >=dev-util/cmake-3.9.6 >=dev-vcs/git-1.8.2.1
 DESCRIPTION=A programmer's API and an end-user's toolkit for handling BAM files
 EAPI=6
 HOMEPAGE=https://github.com/pezmaster31/bamtools
@@ -7,5 +7,5 @@ IUSE=static-libs
 LICENSE=MIT
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/9999
-_eclasses_=cmake-utils	5af1e1540847474085b8af891dc0793c	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	git-r3	fec09a83ae965b041b47f5ff7c8ba29a	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	git-r3	fec09a83ae965b041b47f5ff7c8ba29a	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=2f7d6b2856395f0920d7b682b6bbad56
diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r3 b/metadata/md5-cache/sci-biology/clustalx-2.1-r3
index 6ce792c94170..ba72841becd2 100644
--- a/metadata/md5-cache/sci-biology/clustalx-2.1-r3
+++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r3
@@ -3,10 +3,10 @@ DEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5
 DESCRIPTION=Graphical interface for the ClustalW multiple alignment program
 EAPI=6
 HOMEPAGE=http://www.ebi.ac.uk/tools/clustalw2/
-KEYWORDS=~amd64 ~x86
+KEYWORDS=amd64 ~x86
 LICENSE=GPL-3 LGPL-3
 RDEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5 >=sci-biology/clustalw-2.1
 SLOT=0
 SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz https://dev.gentoo.org/~jlec/distfiles/clustalx.png.xz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	estack	43ddf5aaffa7a8d0482df54d25a66a1f	multilib	97f470f374f2e94ccab04a2fb21d811e	qmake-utils	990448b067cb3cfe1443bc25fb57239c	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9
-_md5_=939c13314a1b836dad92490ce67ece04
+_md5_=8c852e09fed94e065b46bb0f574ec132
diff --git a/metadata/md5-cache/sci-biology/express-0.9.5-r1 b/metadata/md5-cache/sci-biology/express-0.9.5-r1
index b44dd2d2b92f..34ad9f79aa78 100644
--- a/metadata/md5-cache/sci-biology/express-0.9.5-r1
+++ b/metadata/md5-cache/sci-biology/express-0.9.5-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=>=dev-libs/boost-1.52.0:= sys-libs/zlib sci-biology/bamtools sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=>=dev-libs/boost-1.52.0:= sys-libs/zlib sci-biology/bamtools sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=Streaming RNA-Seq Analysis
 EAPI=5
 HOMEPAGE=http://bio.math.berkeley.edu/eXpress/
@@ -8,5 +8,5 @@ LICENSE=Artistic
 RDEPEND=>=dev-libs/boost-1.52.0:= sys-libs/zlib sci-biology/bamtools
 SLOT=0
 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-0.9.5/express-0.9.5-src.tgz
-_eclasses_=cmake-utils	5af1e1540847474085b8af891dc0793c	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=6d15a446bfc7659cceaabe3567001583
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index afe80208c71b..fa0c761bd3f6 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sys-libs/zlib sci-biology/bamtools sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sys-libs/zlib sci-biology/bamtools sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=Streaming RNA-Seq Analysis
 EAPI=5
 HOMEPAGE=http://bio.math.berkeley.edu/eXpress/
@@ -8,5 +8,5 @@ LICENSE=Artistic
 RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sys-libs/zlib sci-biology/bamtools
 SLOT=0
 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
-_eclasses_=cmake-utils	5af1e1540847474085b8af891dc0793c	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=a2d4ea80b964801c45f62ae737430d6d
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.7 b/metadata/md5-cache/sci-biology/fasttree-2.1.7
index 26c6f593f4a4..965920e6af5e 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.7
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.7
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=Fast inference of approximately-maximum-likelihood phylogenetic trees
 EAPI=5
 HOMEPAGE=http://www.microbesonline.org/fasttree/
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
 SLOT=0
 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.7.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.7.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.7.tar.gz
-_eclasses_=cmake-utils	5af1e1540847474085b8af891dc0793c	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=20d72299931c8f8e092006a9b668182c
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.8 b/metadata/md5-cache/sci-biology/fasttree-2.1.8
index d64954af4738..5b7b34ed0b5b 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.8
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.8
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=Fast inference of approximately-maximum-likelihood phylogenetic trees
 EAPI=5
 HOMEPAGE=http://www.microbesonline.org/fasttree/
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
 SLOT=0
 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.8.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.8.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.8.tar.gz
-_eclasses_=cmake-utils	5af1e1540847474085b8af891dc0793c	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=f2b648d93a4c0ca58285574958cde15a
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.43.1 b/metadata/md5-cache/sci-biology/kallisto-0.43.1
index 59259188fa2d..5ec5e5d6484a 100644
--- a/metadata/md5-cache/sci-biology/kallisto-0.43.1
+++ b/metadata/md5-cache/sci-biology/kallisto-0.43.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=sci-libs/hdf5:= sys-libs/zlib:= sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=sci-libs/hdf5:= sys-libs/zlib:= sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=Near-optimal RNA-Seq quantification
 EAPI=6
 HOMEPAGE=http://pachterlab.github.io/kallisto/
@@ -8,5 +8,5 @@ LICENSE=BSD
 RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
 SLOT=0
 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz -> kallisto-0.43.1.tar.gz
-_eclasses_=cmake-utils	5af1e1540847474085b8af891dc0793c	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=b5fc562bf49e70db44b86bc5702ae9f2
diff --git a/metadata/md5-cache/sci-biology/kallisto-9999 b/metadata/md5-cache/sci-biology/kallisto-9999
index 9420977658e3..14026f82d8c7 100644
--- a/metadata/md5-cache/sci-biology/kallisto-9999
+++ b/metadata/md5-cache/sci-biology/kallisto-9999
@@ -1,10 +1,10 @@
 DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=sci-libs/hdf5:= sys-libs/zlib:= sys-devel/make >=dev-util/cmake-3.7.2 >=dev-vcs/git-1.8.2.1
+DEPEND=sci-libs/hdf5:= sys-libs/zlib:= sys-devel/make >=dev-util/cmake-3.9.6 >=dev-vcs/git-1.8.2.1
 DESCRIPTION=Near-optimal RNA-Seq quantification
 EAPI=6
 HOMEPAGE=http://pachterlab.github.io/kallisto/
 LICENSE=BSD
 RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
 SLOT=0
-_eclasses_=cmake-utils	5af1e1540847474085b8af891dc0793c	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	git-r3	fec09a83ae965b041b47f5ff7c8ba29a	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	git-r3	fec09a83ae965b041b47f5ff7c8ba29a	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=b5fc562bf49e70db44b86bc5702ae9f2
diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
index fea0d66e3ef9..75c7bb9098a0 100644
--- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
+++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install postinst prepare setup test
-DEPEND=app-arch/bzip2 sys-libs/zlib test? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/nose[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=app-arch/bzip2 sys-libs/zlib test? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/nose[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=C++ Sequence Analysis Library
 EAPI=6
 HOMEPAGE=http://www.seqan.de/
@@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=1.4
 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz
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+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	27d7f9da7187d283b7f3eae8390b7b09	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=b6c214312349c09a0fe901e8d0235a32
diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
index 2558fa9cb91a..59f86ff547d0 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 doc? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/sphinx[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) test? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/nose[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 doc? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/sphinx[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) test? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/nose[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=C++ Sequence Analysis Library
 EAPI=6
 HOMEPAGE=http://www.seqan.de/
@@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz
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+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	27d7f9da7187d283b7f3eae8390b7b09	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=0a4cc55d3cd27897618671fdafc13e2f
diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0 b/metadata/md5-cache/sci-biology/seqan-2.4.0
index aad2371163e1..91471732ff9f 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.4.0
+++ b/metadata/md5-cache/sci-biology/seqan-2.4.0
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare setup test
-DEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 doc? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/sphinx[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) dev-util/ninja >=dev-util/cmake-3.7.2
+DEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 doc? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/sphinx[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) dev-util/ninja >=dev-util/cmake-3.9.6
 DESCRIPTION=C++ Sequence Analysis Library
 EAPI=6
 HOMEPAGE=http://www.seqan.de/
@@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/s
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz
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 _md5_=ca34cde2b2fc2f8692469a016bc077f6
diff --git a/metadata/md5-cache/sci-biology/seqan-9999 b/metadata/md5-cache/sci-biology/seqan-9999
index 53a14d943ebd..383a3db75fa7 100644
--- a/metadata/md5-cache/sci-biology/seqan-9999
+++ b/metadata/md5-cache/sci-biology/seqan-9999
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare setup test unpack
-DEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 doc? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/sphinx[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) dev-util/ninja >=dev-util/cmake-3.7.2 >=dev-vcs/git-1.8.2.1
+DEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 doc? ( || ( ( >=dev-lang/python-2.7.5-r2:2.7 dev-python/sphinx[python_targets_python2_7(-),python_single_target_python2_7(+)] ) ) || ( >=dev-lang/python-2.7.5-r2:2.7 ) ) dev-util/ninja >=dev-util/cmake-3.9.6 >=dev-vcs/git-1.8.2.1
 DESCRIPTION=C++ Sequence Analysis Library
 EAPI=6
 HOMEPAGE=http://www.seqan.de/
@@ -8,5 +8,5 @@ LICENSE=BSD GPL-3
 RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
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+_eclasses_=cmake-utils	3e3d64589bcd55d8234821f311e58d28	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	63392afb034aad67f17fa129019eb4d9	flag-o-matic	02908f00f002f0f07c5b74783d778325	git-r3	fec09a83ae965b041b47f5ff7c8ba29a	ltprune	2770eed66a9b8ef944714cd0e968182e	multibuild	72647e255187a1fadc81097b3657e5c3	multilib	97f470f374f2e94ccab04a2fb21d811e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	ebb2eaddc6331c4fa000b8eb8f6fe074	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-any-r1	27d7f9da7187d283b7f3eae8390b7b09	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	885c7d8dd70a58825f3d17e35a3cd1e9	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	ce21313503c41896ebcd7d58b0607e37	xdg-utils	f2c8335407f0b935b0a96d4adf23ef25
 _md5_=954c2a9b05e60f6a61eb27c1cc720117
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40
index 5fe0f40b9852..6f67ddeae615 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40
@@ -1,5 +1,5 @@
 DEFINED_PHASES=compile configure install prepare test
-DEPEND=sys-devel/make >=dev-util/cmake-3.7.2
+DEPEND=sys-devel/make >=dev-util/cmake-3.9.6
 DESCRIPTION=Fast, accurate chimera detection
 EAPI=6
 HOMEPAGE=http://www.drive5.com/uchime/
@@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 SLOT=0
 SRC_URI=http://drive5.com/uchime/uchime4.2.40_src.tar.gz
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 _md5_=6adcbb8c658bdc3c40f797c61f5c58b0