gentoo auto-resync : 27:04:2024 - 23:59:42

5 files changed, 4 insertions, 37 deletions

diff --git a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 b/metadata/md5-cache/sci-biology/HTSeq-2.0.2
deleted file mode 100644
index cf3a53ad25b9..000000000000
--- a/metadata/md5-cache/sci-biology/HTSeq-2.0.2
+++ /dev/null
@@ -1,17 +0,0 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.4.4[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/setuptools-69.0.3[python_targets_python3_10(-)?,python_targets_python3_11(-)?]
-DEFINED_PHASES=compile configure install prepare test
-DEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] )
-DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
-EAPI=8
-HOMEPAGE=https://htseq.readthedocs.io/
-INHERIT=distutils-r1 flag-o-matic
-IUSE=test python_targets_python3_10 python_targets_python3_11
-KEYWORDS=~amd64
-LICENSE=GPL-3+
-RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 )
-REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
-RESTRICT=!test? ( test )
-SLOT=0
-SRC_URI=https://github.com/htseq/htseq/archive/release_2.0.2.tar.gz -> HTSeq-2.0.2.gh.tar.gz
-_eclasses_=distutils-r1	a9e13d91cb9541a054827cb1d957a660	flag-o-matic	288c54efeb5e2aa70775e39032695ad4	multibuild	d67e78a235f541871c7dfe4cf7931489	multilib	c19072c3cd7ac5cb21de013f7e9832e0	multiprocessing	30ead54fa2e2b5f9cd4e612ffc34d0fe	ninja-utils	2df4e452cea39a9ec8fb543ce059f8d6	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	8a28fa6d3e3bc96ff8a7eff2badbe71f	python-utils-r1	a1229a86bd0db058e474a2d7d9191cca	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=29d76005d4f5d0a05fc0182fba12f7f5
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
deleted file mode 100644
index bf65536cac3f..000000000000
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ /dev/null
@@ -1,16 +0,0 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-python/pytest-7.4.4[python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 ) >=dev-python/setuptools-69.0.3[python_targets_python3_10(-)?,python_targets_python3_11(-)?] >=dev-vcs/git-1.8.2.1[curl]
-DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] test? ( dev-python/matplotlib[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/pandas[python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/scipy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] )
-DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
-EAPI=8
-HOMEPAGE=https://htseq.readthedocs.io/
-INHERIT=distutils-r1 flag-o-matic git-r3
-IUSE=test python_targets_python3_10 python_targets_python3_11
-LICENSE=GPL-3+
-PROPERTIES=live
-RDEPEND=dev-python/numpy[python_targets_python3_10(-)?,python_targets_python3_11(-)?] sci-biology/pysam[python_targets_python3_10(-)?,python_targets_python3_11(-)?] python_targets_python3_10? ( dev-lang/python:3.10 ) python_targets_python3_11? ( dev-lang/python:3.11 )
-REQUIRED_USE=|| ( python_targets_python3_10 python_targets_python3_11 )
-RESTRICT=!test? ( test )
-SLOT=0
-_eclasses_=distutils-r1	a9e13d91cb9541a054827cb1d957a660	flag-o-matic	288c54efeb5e2aa70775e39032695ad4	git-r3	fbb2889c81f3a05910c1524db69425c1	multibuild	d67e78a235f541871c7dfe4cf7931489	multilib	c19072c3cd7ac5cb21de013f7e9832e0	multiprocessing	30ead54fa2e2b5f9cd4e612ffc34d0fe	ninja-utils	2df4e452cea39a9ec8fb543ce059f8d6	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	8a28fa6d3e3bc96ff8a7eff2badbe71f	python-utils-r1	a1229a86bd0db058e474a2d7d9191cca	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=29d76005d4f5d0a05fc0182fba12f7f5
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 53e33c9fb27e..83d281742849 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r3 b/metadata/md5-cache/sci-biology/maq-0.7.1-r4
index 0a07df4412f4..cb7cfca3b4f4 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r3
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r4
@@ -3,7 +3,7 @@ DEFINED_PHASES=install prepare
 DEPEND=sys-libs/zlib
 DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes
 EAPI=8
-HOMEPAGE=http://maq.sourceforge.net/
+HOMEPAGE=https://maq.sourceforge.net/
 INHERIT=autotools
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=GPL-3
@@ -11,4 +11,4 @@ RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz
 _eclasses_=autotools	3af8f60c4bdb23e738db506a630898ee	gnuconfig	b6b3e92f8b8c996400074b5f61a59256	libtool	5f49a16f67f81bdf873e3d1f10b10001	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=063e8f4add19e5b685018dfb11be0196
+_md5_=6e45ccc697f8a411f0b0283eb0019d32
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r4 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5
index 3981958c41df..7f4338b3947b 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r4
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5
@@ -3,7 +3,7 @@ DEFINED_PHASES=prepare
 DEPEND=media-libs/freeglut sys-libs/zlib
 DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler
 EAPI=8
-HOMEPAGE=http://maq.sourceforge.net/
+HOMEPAGE=https://maq.sourceforge.net/
 INHERIT=autotools
 KEYWORDS=~amd64 ~x86
 LICENSE=GPL-3
@@ -11,4 +11,4 @@ RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz
 _eclasses_=autotools	3af8f60c4bdb23e738db506a630898ee	gnuconfig	b6b3e92f8b8c996400074b5f61a59256	libtool	5f49a16f67f81bdf873e3d1f10b10001	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=ce6e22a8dca500f24263e27d73b9eda4
+_md5_=eb464e54d79a241ceaa0c79e8bdae8ae