gentoo auto-resync : 01:05:2024 - 00:00:04

11 files changed, 20 insertions, 20 deletions

diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 83d281742849..bb463fb251d2 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index 74ef6a28ee15..2711fd7a4e18 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -10,6 +10,6 @@ LICENSE=GPL-2
 RDEPEND=dev-perl/XML-Simple
 RESTRICT=test
 SLOT=0
-SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz
+SRC_URI=https://downloads.sourceforge.net/bfast/bfast-0.7.0a.tar.gz
 _eclasses_=autotools	3af8f60c4bdb23e738db506a630898ee	gnuconfig	b6b3e92f8b8c996400074b5f61a59256	libtool	5f49a16f67f81bdf873e3d1f10b10001	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=e64abecddb86e9860edc80410f299d83
+_md5_=de9f50a6363291c4ea76ed050d9b2dfb
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.4.4 b/metadata/md5-cache/sci-biology/bowtie-2.4.4
index 8da498853725..e795093628d0 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.4.4
+++ b/metadata/md5-cache/sci-biology/bowtie-2.4.4
@@ -11,6 +11,6 @@ LICENSE=GPL-3
 RDEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) dev-lang/perl sys-libs/zlib
 REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_10 )
 SLOT=2
-SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip
+SRC_URI=https://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip
 _eclasses_=multilib	c19072c3cd7ac5cb21de013f7e9832e0	multiprocessing	30ead54fa2e2b5f9cd4e612ffc34d0fe	python-single-r1	75118e916668a74c660a13b0ecb22562	python-utils-r1	a1229a86bd0db058e474a2d7d9191cca	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=7e782380091eb080dc11ed573335cbf2
+_md5_=96d47aea8f0f6093567ab8b36422563c
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.5.1 b/metadata/md5-cache/sci-biology/bowtie-2.5.1
index 7f9cb634c69b..ee4d285506cd 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.5.1
+++ b/metadata/md5-cache/sci-biology/bowtie-2.5.1
@@ -12,6 +12,6 @@ RDEPEND=python_single_target_python3_10? ( dev-lang/python:3.10 ) python_single_
 REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_10 python_single_target_python3_11 )
 RESTRICT=test
 SLOT=2
-SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.5.1/bowtie2-2.5.1-source.zip
+SRC_URI=https://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.5.1/bowtie2-2.5.1-source.zip
 _eclasses_=multilib	c19072c3cd7ac5cb21de013f7e9832e0	multiprocessing	30ead54fa2e2b5f9cd4e612ffc34d0fe	python-single-r1	75118e916668a74c660a13b0ecb22562	python-utils-r1	a1229a86bd0db058e474a2d7d9191cca	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=831933c38b43e507442ee567a3c3583f
+_md5_=ab2b80667d34faafb7de112d07bc15d2
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r4 b/metadata/md5-cache/sci-biology/maq-0.7.1-r4
index cb7cfca3b4f4..8373c167ca38 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r4
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r4
@@ -9,6 +9,6 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=GPL-3
 RDEPEND=sys-libs/zlib
 SLOT=0
-SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz
+SRC_URI=https://downloads.sourceforge.net/maq/maq-0.7.1.tar.bz2 https://downloads.sourceforge.net/maq/calib-36.dat.gz
 _eclasses_=autotools	3af8f60c4bdb23e738db506a630898ee	gnuconfig	b6b3e92f8b8c996400074b5f61a59256	libtool	5f49a16f67f81bdf873e3d1f10b10001	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=6e45ccc697f8a411f0b0283eb0019d32
+_md5_=3ce78ae7f9c21ec3fcfe0096f0b6f814
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5
index 7f4338b3947b..db06092be15f 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r5
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5
@@ -9,6 +9,6 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-3
 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
 SLOT=0
-SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz
+SRC_URI=https://downloads.sourceforge.net/maq/maqview-0.2.5.tar.gz
 _eclasses_=autotools	3af8f60c4bdb23e738db506a630898ee	gnuconfig	b6b3e92f8b8c996400074b5f61a59256	libtool	5f49a16f67f81bdf873e3d1f10b10001	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=eb464e54d79a241ceaa0c79e8bdae8ae
+_md5_=ff137cbddb3451a621dbf212ee4a6fe8
diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
index 58d281edd25e..a9df995e62c1 100644
--- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
+++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
@@ -9,6 +9,6 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos
 LICENSE=GPL-2
 RDEPEND=sys-libs/ncurses:= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:= )
 SLOT=0
-SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz
+SRC_URI=https://downloads.sourceforge.net/mrbayes/mrbayes-3.1.2.tar.gz
 _eclasses_=multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=90cf0e9cbae92852e8eb4b8ac547c951
+_md5_=ea81abd131a657bcd4c6d3199d56bdb6
diff --git a/metadata/md5-cache/sci-biology/mummer-3.23-r1 b/metadata/md5-cache/sci-biology/mummer-3.23-r1
index ec55f03245a0..64dd5f52d54a 100644
--- a/metadata/md5-cache/sci-biology/mummer-3.23-r1
+++ b/metadata/md5-cache/sci-biology/mummer-3.23-r1
@@ -8,6 +8,6 @@ KEYWORDS=~amd64 ~x86
 LICENSE=Artistic
 RDEPEND=app-shells/tcsh dev-lang/perl
 SLOT=0
-SRC_URI=mirror://sourceforge/mummer/MUMmer3.23.tar.gz
+SRC_URI=https://downloads.sourceforge.net/mummer/MUMmer3.23.tar.gz
 _eclasses_=flag-o-matic	288c54efeb5e2aa70775e39032695ad4	multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=7103f6fc8a8d965ba2e5b71b09010e1d
+_md5_=6c017adea5c77f3b2646f4b5947bcd7a
diff --git a/metadata/md5-cache/sci-biology/poa-2-r1 b/metadata/md5-cache/sci-biology/poa-2-r1
index 31a0e6b12f0d..b2c2f2b69d3f 100644
--- a/metadata/md5-cache/sci-biology/poa-2-r1
+++ b/metadata/md5-cache/sci-biology/poa-2-r1
@@ -6,6 +6,6 @@ INHERIT=toolchain-funcs
 KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
-SRC_URI=mirror://sourceforge/poamsa/poaV2.tar.gz
+SRC_URI=https://downloads.sourceforge.net/poamsa/poaV2.tar.gz
 _eclasses_=multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=903ecfa03b5ccff264e1b75f90e8b664
+_md5_=f02597eeb24e8a653d2a5a2471b8225e
diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.7-r1 b/metadata/md5-cache/sci-biology/primer3-2.3.7-r1
index 19dec21a45d6..39d0419628d6 100644
--- a/metadata/md5-cache/sci-biology/primer3-2.3.7-r1
+++ b/metadata/md5-cache/sci-biology/primer3-2.3.7-r1
@@ -7,6 +7,6 @@ INHERIT=toolchain-funcs
 KEYWORDS=~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos
 LICENSE=GPL-2
 SLOT=0
-SRC_URI=mirror://sourceforge/project/primer3/primer3/2.3.7/primer3-2.3.7.tar.gz
+SRC_URI=https://downloads.sourceforge.net/project/primer3/primer3/2.3.7/primer3-2.3.7.tar.gz
 _eclasses_=multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=7c332f2eee3108c0929cddfad29374e7
+_md5_=97f0ac9f861df5bc03a38dea0dc29c78
diff --git a/metadata/md5-cache/sci-biology/sibsim4-0.20 b/metadata/md5-cache/sci-biology/sibsim4-0.20
index d0569dd1c59b..d7ff12c1ca83 100644
--- a/metadata/md5-cache/sci-biology/sibsim4-0.20
+++ b/metadata/md5-cache/sci-biology/sibsim4-0.20
@@ -6,6 +6,6 @@ INHERIT=toolchain-funcs
 KEYWORDS=amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
-SRC_URI=mirror://sourceforge/sibsim4/SIBsim4-0.20.tar.gz
+SRC_URI=https://downloads.sourceforge.net/sibsim4/SIBsim4-0.20.tar.gz
 _eclasses_=multilib	c19072c3cd7ac5cb21de013f7e9832e0	toolchain-funcs	e56c7649b804f051623c8bc1a1c44084
-_md5_=c9dc1d70a172b8258f2f0e4f3f7e967c
+_md5_=9b5ef2da855926e5626df0ee21cd2d67