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authorV3n3RiX <venerix@koprulu.sector>2021-12-05 02:47:11 +0000
committerV3n3RiX <venerix@koprulu.sector>2021-12-05 02:47:11 +0000
commit2771f79232c273bc2a57d23bf335dd81ccf6af28 (patch)
treec8af0fd04194aed03cf067d44e53c7edd3e9ab84 /metadata/md5-cache/sci-biology
parente9d044d4b9b71200a96adfa280848858c0f468c9 (diff)
gentoo resync : 05.12.2021
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/ApE-2.0.7-r18
-rw-r--r--metadata/md5-cache/sci-biology/Manifest.gzbin22574 -> 22582 bytes
-rw-r--r--metadata/md5-cache/sci-biology/amap-2.2-r42
-rw-r--r--metadata/md5-cache/sci-biology/clustalw-1.83-r44
-rw-r--r--metadata/md5-cache/sci-biology/muscle-3.8.314
-rw-r--r--metadata/md5-cache/sci-biology/phyml-2.4.5-r34
-rw-r--r--metadata/md5-cache/sci-biology/picard-1.1032
-rw-r--r--metadata/md5-cache/sci-biology/stride-20011129-r14
8 files changed, 14 insertions, 14 deletions
diff --git a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
index 132e8a9881cc..acb2f10d8ac1 100644
--- a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
+++ b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
@@ -2,12 +2,12 @@ DEFINED_PHASES=compile install
DEPEND=app-arch/unzip
DESCRIPTION=A Plasmid Editor
EAPI=5
-HOMEPAGE=http://www.biology.utah.edu/jorgensen/wayned/ape/
+HOMEPAGE=https://jorgensen.biology.utah.edu/wayned/ape/
KEYWORDS=~amd64 ~x86
LICENSE=ApE
RDEPEND=dev-lang/tcl:0 dev-lang/tk:0
RESTRICT=bindist mirror
SLOT=0
-SRC_URI=http://www.biology.utah.edu/jorgensen/wayned/ape/Download/Linux/ApE_linux_current.zip -> ApE-2.0.7.zip
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils dab5d8ec471d025b79c9e6906bcf3bff ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib 4b66d835ec72e021e359bb81eacfe988 preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa vcs-clean b690a7e9b6c497cf59326a7545df4283 wrapper 4251d4c84c25f59094fd557e0063a974
-_md5_=ca6aef807b65b2b092f7e1ff4ebbe5e2
+SRC_URI=https://jorgensen.biology.utah.edu/wayned/ape/Download/Linux/ApE_linux_current.zip -> ApE-2.0.7.zip
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28
+_md5_=4f049357fd8479a52941dcaed4c67ec5
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index b09176b359f9..b73982b072ab 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
Binary files differ
diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r4 b/metadata/md5-cache/sci-biology/amap-2.2-r4
index 4b93c23698ef..22df8af64c11 100644
--- a/metadata/md5-cache/sci-biology/amap-2.2-r4
+++ b/metadata/md5-cache/sci-biology/amap-2.2-r4
@@ -9,5 +9,5 @@ LICENSE=GPL-2
RDEPEND=java? ( >=virtual/jre-1.8:* ) java? ( >=dev-java/java-config-2.2.0-r3 )
SLOT=0
SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 eapi7-ver 1a0a60ad07c8b32d2faba2d085dc0f24 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils dab5d8ec471d025b79c9e6906bcf3bff java-ant-2 e83ca06db890ca292b0b6d43e376e20d java-pkg-opt-2 bf35c60a54945228d5d4cb3a5cc17f5a java-utils-2 8a3af9303fdbeca4510a6ba6e91b1460 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib 4b66d835ec72e021e359bb81eacfe988 preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa vcs-clean b690a7e9b6c497cf59326a7545df4283 versionator d3fb3ba33acc3bbbdc4d7970227c100d wrapper 4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 eapi7-ver 1a0a60ad07c8b32d2faba2d085dc0f24 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils dab5d8ec471d025b79c9e6906bcf3bff java-ant-2 e83ca06db890ca292b0b6d43e376e20d java-pkg-opt-2 bf35c60a54945228d5d4cb3a5cc17f5a java-utils-2 32fe52795e36e76dcbcf92d89bb1c4d0 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib 4b66d835ec72e021e359bb81eacfe988 preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa vcs-clean b690a7e9b6c497cf59326a7545df4283 versionator d3fb3ba33acc3bbbdc4d7970227c100d wrapper 4251d4c84c25f59094fd557e0063a974
_md5_=857434504156a8892f1335babe24f9f0
diff --git a/metadata/md5-cache/sci-biology/clustalw-1.83-r4 b/metadata/md5-cache/sci-biology/clustalw-1.83-r4
index 0c360e93dad7..ab2a3b52a5dd 100644
--- a/metadata/md5-cache/sci-biology/clustalw-1.83-r4
+++ b/metadata/md5-cache/sci-biology/clustalw-1.83-r4
@@ -2,9 +2,9 @@ DEFINED_PHASES=install prepare
DESCRIPTION=General purpose multiple alignment program for DNA and proteins
EAPI=6
HOMEPAGE=http://www.embl-heidelberg.de/~seqanal/
-KEYWORDS=amd64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris
+KEYWORDS=amd64 ~ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris
LICENSE=clustalw
SLOT=1
SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/clustalw1.83.UNIX.tar.gz
_eclasses_=multilib 4b66d835ec72e021e359bb81eacfe988 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa
-_md5_=0f69889feff7a8cb3002ae5d4ea053d3
+_md5_=0bc3b2f2f4e07f1d81ee076b0fbe6c60
diff --git a/metadata/md5-cache/sci-biology/muscle-3.8.31 b/metadata/md5-cache/sci-biology/muscle-3.8.31
index 3c85f6e587fb..3314975d5ad3 100644
--- a/metadata/md5-cache/sci-biology/muscle-3.8.31
+++ b/metadata/md5-cache/sci-biology/muscle-3.8.31
@@ -2,10 +2,10 @@ DEFINED_PHASES=configure install
DESCRIPTION=Multiple sequence comparison by log-expectation
EAPI=7
HOMEPAGE=http://www.drive5.com/muscle/
-KEYWORDS=amd64 ppc x86
+KEYWORDS=amd64 ~ppc x86
LICENSE=public-domain
RDEPEND=!sci-libs/libmuscle
SLOT=0
SRC_URI=http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz
_eclasses_=multilib 4b66d835ec72e021e359bb81eacfe988 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa
-_md5_=53bf57f6526fd17fc747a39406e13cef
+_md5_=70730a85bf27816f07c7b7498e5adc91
diff --git a/metadata/md5-cache/sci-biology/phyml-2.4.5-r3 b/metadata/md5-cache/sci-biology/phyml-2.4.5-r3
index 264f16222627..4ab42bc393ab 100644
--- a/metadata/md5-cache/sci-biology/phyml-2.4.5-r3
+++ b/metadata/md5-cache/sci-biology/phyml-2.4.5-r3
@@ -2,9 +2,9 @@ DEFINED_PHASES=install prepare
DESCRIPTION=Estimation of large phylogenies by maximum likelihood
EAPI=6
HOMEPAGE=http://atgc.lirmm.fr/phyml/
-KEYWORDS=amd64 ppc x86
+KEYWORDS=amd64 ~ppc x86
LICENSE=GPL-2
SLOT=0
SRC_URI=http://www.lirmm.fr/~guindon/phyml_v2.4.5.tar.gz
_eclasses_=multilib 4b66d835ec72e021e359bb81eacfe988 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa
-_md5_=fcca6fb4f9e88f5eb6a63a3ee0c79df7
+_md5_=8909f510fa1072825fa60fbc8a72920e
diff --git a/metadata/md5-cache/sci-biology/picard-1.103 b/metadata/md5-cache/sci-biology/picard-1.103
index 48ba699f900d..fa010f793347 100644
--- a/metadata/md5-cache/sci-biology/picard-1.103
+++ b/metadata/md5-cache/sci-biology/picard-1.103
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/snappy:1.0 dev-java/cofoja:0 dev-java/commons
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://dev.gentoo.org/~ercpe/distfiles/sci-biology/picard/picard-1.103.tar.bz2
-_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 eapi7-ver 1a0a60ad07c8b32d2faba2d085dc0f24 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils dab5d8ec471d025b79c9e6906bcf3bff java-ant-2 e83ca06db890ca292b0b6d43e376e20d java-pkg-2 a3d583b3f640032c3eff643a4191bd03 java-utils-2 8a3af9303fdbeca4510a6ba6e91b1460 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib 4b66d835ec72e021e359bb81eacfe988 preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa vcs-clean b690a7e9b6c497cf59326a7545df4283 versionator d3fb3ba33acc3bbbdc4d7970227c100d wrapper 4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop c0d27bf73aa08ca05b663dbd31fbef28 eapi7-ver 1a0a60ad07c8b32d2faba2d085dc0f24 edos2unix 33e347e171066657f91f8b0c72ec8773 epatch 9f813bb3c47cf2e60619a663b87c5f4e estack 055c42df72f76a4f45ec92b35e83cd56 eutils dab5d8ec471d025b79c9e6906bcf3bff java-ant-2 e83ca06db890ca292b0b6d43e376e20d java-pkg-2 2d0eb1353bf1264bd6e61736d3e409a2 java-utils-2 32fe52795e36e76dcbcf92d89bb1c4d0 ltprune 4f3f2db5ce3ccbeeacdf3f94954043aa multilib 4b66d835ec72e021e359bb81eacfe988 preserve-libs dbc9f8d2d49c66467bc327fddd8317bd strip-linguas ac3ee41ee2d31d8c41a77c0838320cc7 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa vcs-clean b690a7e9b6c497cf59326a7545df4283 versionator d3fb3ba33acc3bbbdc4d7970227c100d wrapper 4251d4c84c25f59094fd557e0063a974
_md5_=09627e6bb74ee9997324bde01a56bcbd
diff --git a/metadata/md5-cache/sci-biology/stride-20011129-r1 b/metadata/md5-cache/sci-biology/stride-20011129-r1
index 81e405222dcb..a854eb87a218 100644
--- a/metadata/md5-cache/sci-biology/stride-20011129-r1
+++ b/metadata/md5-cache/sci-biology/stride-20011129-r1
@@ -2,10 +2,10 @@ DEFINED_PHASES=configure install
DESCRIPTION=Protein secondary structure assignment from atomic coordinates
EAPI=7
HOMEPAGE=http://webclu.bio.wzw.tum.de/stride/
-KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux
+KEYWORDS=amd64 ~ppc x86 ~amd64-linux ~x86-linux
LICENSE=STRIDE
RESTRICT=mirror bindist
SLOT=0
SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz -> stride-20011129.tar.gz https://dev.gentoo.org/~pacho/stride/stride-20060723-update.patch.bz2
_eclasses_=multilib 4b66d835ec72e021e359bb81eacfe988 toolchain-funcs 9ea1c67b6f8315fdc2568abb674519aa
-_md5_=817435dd944977478aa2ef74ff4b3971
+_md5_=9ec341e7ee97fc8fd15fa6e200e17bfd