gentoo resync : 25.11.2020

author: V3n3RiX <venerix@redcorelinux.org> 2020-11-25 22:39:15 +0000
committer: V3n3RiX <venerix@redcorelinux.org> 2020-11-25 22:39:15 +0000
commit: d934827bf44b7cfcf6711964418148fa60877668 (patch)
tree: 0625f358789b5e015e49db139cc1dbc9be00428f /metadata/md5-cache/sci-biology
parent: 2e34d110f164bf74d55fced27fe0000201b3eec5 (diff)
144 files changed, 203 insertions, 315 deletions
diff --git a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
index 380d8f902c08..aacc3ba94fae 100644
--- a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
+++ b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1
@@ -9,5 +9,5 @@ RDEPEND=dev-lang/tcl:0 dev-lang/tk:0
 RESTRICT=bindist mirror
 SLOT=0
 SRC_URI=http://www.biology.utah.edu/jorgensen/wayned/ape/Download/Linux/ApE_linux_current.zip -> ApE-2.0.7.zip
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=ca6aef807b65b2b092f7e1ff4ebbe5e2
diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
index 00447a4e6b11..333e7fdc90ea 100644
--- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
+++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1
@@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ )
 RDEPEND=!<sci-biology/GBrowse-2.44-r1 >=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] >=app-admin/webapp-config-1.50.15
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	16783e418aca3ffa461d68310bf7ab12	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	16783e418aca3ffa461d68310bf7ab12	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=bccaeef3292f6df307fc14fb5a2a74b2
diff --git a/metadata/md5-cache/sci-biology/HTSeq-0.12.4 b/metadata/md5-cache/sci-biology/HTSeq-0.12.4
index 05592b437c79..b2e1521c5f41 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-0.12.4
+++ b/metadata/md5-cache/sci-biology/HTSeq-0.12.4
@@ -11,5 +11,5 @@ RDEPEND=dev-python/numpy[python_targets_python3_6(-)?,python_targets_python3_7(-
 REQUIRED_USE=|| ( python_targets_python3_6 python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
 SLOT=0
 SRC_URI=https://github.com/htseq/htseq/archive/release_0.12.4.tar.gz -> HTSeq-0.12.4.tar.gz
-_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	multibuild	b2c915190b051f55a23b9354b9849847	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	multibuild	b2c915190b051f55a23b9354b9849847	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=ed6a76d098be1d996f372cc4a1949747
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
index 06a2f610658f..6d37bf0453e8 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -10,5 +10,5 @@ PROPERTIES=live
 RDEPEND=dev-python/numpy[python_targets_python3_6(-)?,python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] dev-python/matplotlib[python_targets_python3_6(-)?,python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] sci-biology/pysam[python_targets_python3_6(-)?,python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] python_targets_python3_6? ( dev-lang/python:3.6 ) python_targets_python3_7? ( dev-lang/python:3.7 ) python_targets_python3_8? ( dev-lang/python:3.8 ) python_targets_python3_9? ( dev-lang/python:3.9 ) >=dev-lang/python-exec-2:=[python_targets_python3_6(-)?,python_targets_python3_7(-)?,python_targets_python3_8(-)?,python_targets_python3_9(-)?,-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)]
 REQUIRED_USE=|| ( python_targets_python3_6 python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
 SLOT=0
-_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	git-r3	3e7ec3d6619213460c85e2aa48398441	multibuild	b2c915190b051f55a23b9354b9849847	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	git-r3	3e7ec3d6619213460c85e2aa48398441	multibuild	b2c915190b051f55a23b9354b9849847	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=ed6a76d098be1d996f372cc4a1949747
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 0cdcda66495b..c48d905eb22b 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/STAR-2.5.3a b/metadata/md5-cache/sci-biology/STAR-2.5.3a
index 91216c3d06b6..5ca4d5c6cab3 100644
--- a/metadata/md5-cache/sci-biology/STAR-2.5.3a
+++ b/metadata/md5-cache/sci-biology/STAR-2.5.3a
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=sci-libs/htslib:=
 SLOT=0
 SRC_URI=https://github.com/alexdobin/STAR/archive/2.5.3a.tar.gz -> STAR-2.5.3a.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=1eb821b9192887ab1f2ac6b1536037ac
diff --git a/metadata/md5-cache/sci-biology/abyss-2.0.3-r2 b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2
index 415a89807421..ec8c8bf0840b 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.0.3-r2
+++ b/metadata/md5-cache/sci-biology/abyss-2.0.3-r2
@@ -9,5 +9,5 @@ LICENSE=abyss
 RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) mpi? ( sys-cluster/openmpi )
 SLOT=0
 SRC_URI=https://github.com/bcgsc/abyss/archive/2.0.3.tar.gz -> abyss-2.0.3.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=14d874a3152b5d75a6be53f68e24fd47
diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r3 b/metadata/md5-cache/sci-biology/amap-2.2-r3
index 4eba3786bdea..55ec0cb0b718 100644
--- a/metadata/md5-cache/sci-biology/amap-2.2-r3
+++ b/metadata/md5-cache/sci-biology/amap-2.2-r3
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=java? ( >=virtual/jre-1.5 ) java? ( >=dev-java/java-config-2.2.0-r3 )
 SLOT=0
 SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	8d9cb415f1ca9fc7ebc5a74bacec300c	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	ec7a89849c84f93e9c6db27812923888	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	8d9cb415f1ca9fc7ebc5a74bacec300c	java-pkg-opt-2	77d2e22d0de7640f817d20e861c0ff3f	java-utils-2	ec7a89849c84f93e9c6db27812923888	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=6bd792e8b76c06ee993b88f83e48b907
diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 b/metadata/md5-cache/sci-biology/amos-3.1.0-r4
deleted file mode 100644
index c1310bd3d9ac..000000000000
--- a/metadata/md5-cache/sci-biology/amos-3.1.0-r4
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=configure install prepare setup
-DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
-DESCRIPTION=A Modular, Open-Source whole genome assembler
-EAPI=6
-HOMEPAGE=http://amos.sourceforge.net/
-IUSE=+python_single_target_python2_7
-KEYWORDS=~amd64 ~x86
-LICENSE=Artistic
-RDEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) dev-perl/DBI dev-perl/Statistics-Descriptive sci-biology/mummer
-REQUIRED_USE=^^ ( python_single_target_python2_7 )
-SLOT=0
-SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	d3100de905f978df912135806cf27188	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=aec6d1c76d5ea621c66e803800e2b3c4
diff --git a/metadata/md5-cache/sci-biology/augustus-2.5.5 b/metadata/md5-cache/sci-biology/augustus-2.5.5
index 7b85fe5b077b..4ed4e431c060 100644
--- a/metadata/md5-cache/sci-biology/augustus-2.5.5
+++ b/metadata/md5-cache/sci-biology/augustus-2.5.5
@@ -7,5 +7,5 @@ KEYWORDS=amd64 x86
 LICENSE=Artistic
 SLOT=0
 SRC_URI=http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=80962b244c7531e320f35904727b5bd5
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.1 b/metadata/md5-cache/sci-biology/bamtools-2.5.1
index dd2efa7ee0c7..72f7be02d043 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.1
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.1
@@ -9,5 +9,5 @@ LICENSE=MIT
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/2.5.1
 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz -> bamtools-2.5.1.tar.gz
-_eclasses_=cmake	ac7cb516f6a288b6a82bc0649ce49878	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	ac7cb516f6a288b6a82bc0649ce49878	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index 445061016c75..928950a49342 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -8,5 +8,5 @@ LICENSE=MIT
 PROPERTIES=live
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/9999
-_eclasses_=cmake	ac7cb516f6a288b6a82bc0649ce49878	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake	ac7cb516f6a288b6a82bc0649ce49878	edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.10.2 b/metadata/md5-cache/sci-biology/bcftools-1.10.2
index 54ae985714c3..645f8344aa21 100644
--- a/metadata/md5-cache/sci-biology/bcftools-1.10.2
+++ b/metadata/md5-cache/sci-biology/bcftools-1.10.2
@@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl python_single_target_python3_6? ( dev-python/matplotlib[py
 REQUIRED_USE=^^ ( python_single_target_python3_6 python_single_target_python3_7 python_single_target_python3_8 python_single_target_python3_9 )
 SLOT=0
 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.10.2/bcftools-1.10.2.tar.bz2
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	python-single-r1	d3100de905f978df912135806cf27188	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	python-single-r1	d3100de905f978df912135806cf27188	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=ac6cc22f29007163af34c271cc6e7143
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.29.2 b/metadata/md5-cache/sci-biology/bedtools-2.29.2
index 42549ddcd846..2e452732a654 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.29.2
+++ b/metadata/md5-cache/sci-biology/bedtools-2.29.2
@@ -11,5 +11,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.29.2/bedtools-2.29.2.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	python-any-r1	54a3178500786b0a7ede4a23b7f2a6ad	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	python-any-r1	54a3178500786b0a7ede4a23b7f2a6ad	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=52532bdb1b359fc4da02741b3993ddab
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index faa78b405b86..762b44e226e6 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -10,5 +10,5 @@ RDEPEND=dev-perl/XML-Simple
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	autotools-utils	95db0904ad0f62535e18e5ccb67cce5e	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	autotools-utils	961893b8004e6cf64fbef1cea6ed8bd2	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=f752137cf374be5cbb2754f3aa98ad0d
diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
index 70cfa0995362..0ba56905d83e 100644
--- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2
+++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf )
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=9731727dae2a2514bcaa486b0059272e
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7
index db14d9395043..b96d08a6d3c6 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.7
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7
@@ -11,5 +11,5 @@ REQUIRED_USE=|| ( python_targets_python3_6 python_targets_python3_7 python_targe
 RESTRICT=!test? ( test ) !test? ( test )
 SLOT=0
 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz
-_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	multibuild	b2c915190b051f55a23b9354b9849847	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	multibuild	b2c915190b051f55a23b9354b9849847	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=3ae96f946a3da711a855be01492b7bde
diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9
index 55ee0e592838..07ee3130ba8d 100644
--- a/metadata/md5-cache/sci-biology/bioperl-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Arr
 REQUIRED_USE=minimal? ( !graphviz )
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=be22a76392a6e5c121e4b6d388045faa
diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
index c695efea1cbb..56c19c861503 100644
--- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=2470d7ecf1b6ff1902a8d74057748480
diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
index 0637036e69b0..e1b7e3d74444 100644
--- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=8f7c4053ffbec76cfad29cca2d99847b
diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
index d6ed85e0b5ee..27cf1692f8f9 100644
--- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
+++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9
@@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=9caec4e5b47cbf306a1689903f2a018a
diff --git a/metadata/md5-cache/sci-biology/biopython-1.77 b/metadata/md5-cache/sci-biology/biopython-1.77
index d2c13fd01d32..0d6017e7c901 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.77
+++ b/metadata/md5-cache/sci-biology/biopython-1.77
@@ -11,5 +11,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python3_6(-)?,python_targets_python
 REQUIRED_USE=|| ( python_targets_python3_6 python_targets_python3_7 python_targets_python3_8 python_targets_python3_9 )
 SLOT=0
 SRC_URI=mirror://pypi/b/biopython/biopython-1.77.tar.gz
-_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	multibuild	b2c915190b051f55a23b9354b9849847	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	optfeature	6c9aa35fc16df43d7142ef2660e00e25	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	multibuild	b2c915190b051f55a23b9354b9849847	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	optfeature	6c9aa35fc16df43d7142ef2660e00e25	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=6cc3c97eed10a69e2025091cace865ed
diff --git a/metadata/md5-cache/sci-biology/blat-34-r2 b/metadata/md5-cache/sci-biology/blat-34-r2
index ee61c525ef4f..e25c53a3cd47 100644
--- a/metadata/md5-cache/sci-biology/blat-34-r2
+++ b/metadata/md5-cache/sci-biology/blat-34-r2
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=blat
 SLOT=0
 SRC_URI=http://www.soe.ucsc.edu/~kent/src/blatSrc34.zip
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=cfc86b588e33e0935a06563d2a9c19c0
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.2.9 b/metadata/md5-cache/sci-biology/bowtie-2.2.9
index 2d4d5bc43311..152386de8b11 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.2.9
+++ b/metadata/md5-cache/sci-biology/bowtie-2.2.9
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=dev-lang/perl tbb? ( dev-cpp/tbb )
 SLOT=2
 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.2.9/bowtie2-2.2.9-source.zip
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=46d87c867cd445707dc1913cf3dd7eb6
diff --git a/metadata/md5-cache/sci-biology/bwa-0.7.17 b/metadata/md5-cache/sci-biology/bwa-0.7.17
index 0023fbac6b0f..4ab0b76f5877 100644
--- a/metadata/md5-cache/sci-biology/bwa-0.7.17
+++ b/metadata/md5-cache/sci-biology/bwa-0.7.17
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=sys-libs/zlib dev-lang/perl
 SLOT=0
 SRC_URI=https://github.com/lh3/bwa/archive/v0.7.17.tar.gz -> bwa-0.7.17.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=620c3569e8293303737f7844385c7e82
diff --git a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 b/metadata/md5-cache/sci-biology/cd-hit-4.6.6
index c46c33ea9883..2346f75208d8 100644
--- a/metadata/md5-cache/sci-biology/cd-hit-4.6.6
+++ b/metadata/md5-cache/sci-biology/cd-hit-4.6.6
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz -> cd-hit-4.6.6.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=bbe0ae10275a73485487e08f19f4ac1b
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
index cd90f410b33b..39dedf7ddff6 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dev-libs/argtable
 SLOT=0
 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=9ade45d2e283bc5fcc7eef16725e18ae
diff --git a/metadata/md5-cache/sci-biology/clustalw-1.83-r4 b/metadata/md5-cache/sci-biology/clustalw-1.83-r4
index f3c4c96b2278..1c3f1d0f7bd4 100644
--- a/metadata/md5-cache/sci-biology/clustalw-1.83-r4
+++ b/metadata/md5-cache/sci-biology/clustalw-1.83-r4
@@ -6,5 +6,5 @@ KEYWORDS=amd64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-sol
 LICENSE=clustalw
 SLOT=1
 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/clustalw/clustalw1.83.UNIX.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=0f69889feff7a8cb3002ae5d4ea053d3
diff --git a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r2 b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r3
index 1a2b33695ede..b93aeed095b3 100644
--- a/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r2
+++ b/metadata/md5-cache/sci-biology/clustalw-mpi-0.13-r3
@@ -1,13 +1,13 @@
 DEFINED_PHASES=install prepare
 DEPEND=virtual/mpi
 DESCRIPTION=An MPI implemention of the ClustalW general purpose multiple alignment algorithm
-EAPI=6
+EAPI=7
 HOMEPAGE=http://www.bii.a-star.edu.sg/achievements/applications/clustalw/index.php
-IUSE=mpi_njtree static_pairalign
+IUSE=mpi-njtree static-pairalign
 KEYWORDS=~amd64 ~x86
 LICENSE=public-domain
 RDEPEND=virtual/mpi
 SLOT=0
 SRC_URI=http://web.bii.a-star.edu.sg/~kuobin/clustalw-mpi/clustalw-mpi-0.13.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
-_md5_=9e376a1d2ae782d9495b0c6c318aa097
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=689841db0e3b7d6629b51049a2942165
diff --git a/metadata/md5-cache/sci-biology/clustalx-2.1-r3 b/metadata/md5-cache/sci-biology/clustalx-2.1-r3
index a9b5f5d86303..1d613720381d 100644
--- a/metadata/md5-cache/sci-biology/clustalx-2.1-r3
+++ b/metadata/md5-cache/sci-biology/clustalx-2.1-r3
@@ -8,5 +8,5 @@ LICENSE=GPL-3 LGPL-3
 RDEPEND=dev-qt/qtcore:5 dev-qt/qtgui:5 dev-qt/qtwidgets:5 dev-qt/qtxml:5 >=sci-biology/clustalw-2.1
 SLOT=0
 SRC_URI=http://www.clustal.org/download/current/clustalx-2.1.tar.gz https://dev.gentoo.org/~jlec/distfiles/clustalx.png.xz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	estack	686eaab303305a908fd57b2fd7617800	multilib	98584e405e2b0264d37e8f728327fed1	qmake-utils	4eb5e05ef7ee630c003e3f0edc094135	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	estack	686eaab303305a908fd57b2fd7617800	multilib	d410501a125f99ffb560b0c523cd3d1e	qmake-utils	4eb5e05ef7ee630c003e3f0edc094135	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=3f60f1952758458fc3cd4e2789a942f5
diff --git a/metadata/md5-cache/sci-biology/consed-29 b/metadata/md5-cache/sci-biology/consed-29
index f1fd755775da..5bf916371e26 100644
--- a/metadata/md5-cache/sci-biology/consed-29
+++ b/metadata/md5-cache/sci-biology/consed-29
@@ -10,5 +10,5 @@ RDEPEND=x11-libs/libX11 x11-libs/motif:0 sci-biology/samtools:0.1-legacy dev-lan
 RESTRICT=fetch
 SLOT=0
 SRC_URI=consed-29-sources.tar.gz consed-29-linux.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=1e30f1827727dab34c75c8c026745369
diff --git a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2
index 2d5ce76ef3b1..d97578c42db2 100644
--- a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2
+++ b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2
@@ -1,10 +1,10 @@
 DEFINED_PHASES=compile configure install postinst
 DESCRIPTION=Greedy and progressive approaches for segment-based multiple sequence alignment
-EAPI=6
+EAPI=7
 HOMEPAGE=http://dialign-tx.gobics.de/
 KEYWORDS=~amd64 ~x86
 LICENSE=LGPL-2.1
 SLOT=0
 SRC_URI=http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
-_md5_=b04d9beffea802bb82f896df101ca660
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=b2a78c4cfa60eb348ae63d076ecb5fba
diff --git a/metadata/md5-cache/sci-biology/dialign2-2.2.1 b/metadata/md5-cache/sci-biology/dialign2-2.2.1
index cd7fc11d700b..f844c1263e1d 100644
--- a/metadata/md5-cache/sci-biology/dialign2-2.2.1
+++ b/metadata/md5-cache/sci-biology/dialign2-2.2.1
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=LGPL-2.1
 SLOT=0
 SRC_URI=http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=3761a69a47f38308f54ae0b051361ed6
diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4
index df367b064437..6d8c519c7ed0 100644
--- a/metadata/md5-cache/sci-biology/diya-1.0_rc4
+++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal? ( sci-biology/mummer sci-biology/glimmer sci-biology/trnascan-se sci-biology/infernal ) dev-lang/perl:=[-build(-)]
 SLOT=0
 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=5d4639d7c08c43e2c2208492508fd56c
diff --git a/metadata/md5-cache/sci-biology/elph-1.0.1-r1 b/metadata/md5-cache/sci-biology/elph-1.0.1-r1
index 6524f1b23c2e..29bb770d3be0 100644
--- a/metadata/md5-cache/sci-biology/elph-1.0.1-r1
+++ b/metadata/md5-cache/sci-biology/elph-1.0.1-r1
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos
 LICENSE=Artistic
 SLOT=0
 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/elph/ELPH-1.0.1.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=dbee2f511488caf9eadadb20d043a2da
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
index 910d502d6840..196f8b326ec4 100644
--- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz
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 _md5_=4166ba28131fdf70907b31300aa4c08b
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
index aac53cd80c3e..473ad192c659 100644
--- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
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 _md5_=ef491b452e56be12961f62b16961f4f1
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
index f1735bde0b46..9acc2cdf57eb 100644
--- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
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 _md5_=bfee4f5b2b2adadb41de2eb02d4dcbc0
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
index 83de3c323f66..96fac18a0d2f 100644
--- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
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 _md5_=9f8b2caa273f4ae3b0463e6de6782660
diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
index 6b40593d9a4a..edab77f6393c 100644
--- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
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 _md5_=920906439fbc5278460201b23a615736
diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
index 5491aeff7e84..d9718dfdc20c 100644
--- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
+++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
index d2c6e4cd5291..3b177b59f8ef 100644
--- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
index 60458ac92fa8..b3886c503270 100644
--- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
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 _md5_=83d02ae22d4e1864669639d9289cd112
diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
index c81a6aff29a2..3efce9d4de98 100644
--- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660
deleted file mode 100644
index 3a9b464950ac..000000000000
--- a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=configure install prepare
-DEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
-DESCRIPTION=EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation
-EAPI=6
-HOMEPAGE=http://emboss.sourceforge.net/
-IUSE=mysql pdf png postgres static-libs X
-KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
-LICENSE=LGPL-2 GPL-2
-RDEPEND=sci-biology/meme dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
-SLOT=0
-SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.660.tar.gz -> embassy-meme-4.7.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
index d908744160bb..49bb122c8330 100644
--- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz
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 _md5_=84df94b7c4b0f044de45cef524cbf453
diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
index 1d531d916493..545c99a2be31 100644
--- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
+++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz
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-_md5_=052915aa60b919df12c7c4274d5be551
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diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
index cfebfe759da3..3066c7ec3f0e 100644
--- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
index 2d1e4e5beada..fd28bb3f7d9c 100644
--- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz
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diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
index e6862978e641..59a41c730492 100644
--- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=e50220ee11093554b589c1f9f53e7c09
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
index 7bf6c474766c..40f8f6789cfa 100644
--- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
@@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=d257de40bcdb33c0735daac8a5f15fda
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
index 9cb4eb2bdc80..08e784f94dea 100644
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
@@ -10,5 +10,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci
 RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	readme.gentoo-r1	22ae82e140bdd95d17a34fd5fd733190	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	emboss-r2	8895be811ae4511c202bcf2ddb7dbfd8	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	readme.gentoo-r1	22ae82e140bdd95d17a34fd5fd733190	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=99a47266a2a8f2fd0a874111491146e2
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d
index d85f6d0a3365..19ca97dfa51d 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1d
+++ b/metadata/md5-cache/sci-biology/eugene-4.1d
@@ -9,5 +9,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:0=
 RESTRICT=test
 SLOT=0
 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=683d1e7f9daeda6cd20b92117330ea81
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
index 5d43f0121e8b..3b562746af4a 100644
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
@@ -11,5 +11,5 @@ REQUIRED_USE=test? ( utils )
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=05c99b447503c7a3fae4594cd126939a
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index bd0e16e53b4e..3c775723a096 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -8,5 +8,5 @@ LICENSE=Artistic
 RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
 SLOT=0
 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
-_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=10c478f1e1a9a533322963cf4c2e92f8
diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.5e b/metadata/md5-cache/sci-biology/fasta-36.3.5e
index 5acf8c210ae7..528b401434a8 100644
--- a/metadata/md5-cache/sci-biology/fasta-36.3.5e
+++ b/metadata/md5-cache/sci-biology/fasta-36.3.5e
@@ -9,5 +9,5 @@ LICENSE=fasta
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.5e.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=81d08e889f0cf03161c6bf834effe531
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.8 b/metadata/md5-cache/sci-biology/fasttree-2.1.8
index 58bb5c24616b..831e08572bcf 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.8
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.8
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
 SLOT=0
 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.8.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.8.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.8.tar.gz
-_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=5a3e768febbbadcd5c8a4141dd49e11c
diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
index dcef1759f7a9..b53522b19ded 100644
--- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
+++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
@@ -8,5 +8,5 @@ LICENSE=AGPL-3
 RDEPEND=dev-perl/PerlIO-gzip dev-perl/GDGraph sci-biology/libgtextutils:= sci-visualization/gnuplot
 SLOT=0
 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=c3bb0edd6b01a31019cf5fd59e22122a
diff --git a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3
index 448bdc575623..5169367378ba 100644
--- a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3
+++ b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=finchtv
 SLOT=0
 SRC_URI=http://www.geospiza.com/finchtv/download/programs/linux/finchtv_1_3_1.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=08355830f28d1052c2ab527b82a8dd68
diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.5.1-r3 b/metadata/md5-cache/sci-biology/foldingathome-7.5.1-r3
index c90503c563fb..8da9514f6f1f 100644
--- a/metadata/md5-cache/sci-biology/foldingathome-7.5.1-r3
+++ b/metadata/md5-cache/sci-biology/foldingathome-7.5.1-r3
@@ -9,5 +9,5 @@ RDEPEND=app-arch/bzip2 || ( dev-libs/openssl-compat:1.0.0 =dev-libs/openssl-1.0*
 RESTRICT=mirror bindist strip
 SLOT=0
 SRC_URI=https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v7.5/fahclient_7.5.1-64bit-release.tar.bz2
-_eclasses_=estack	686eaab303305a908fd57b2fd7617800	multilib	98584e405e2b0264d37e8f728327fed1	systemd	69be00334d73f9f50261554b94be0879	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	user	7b7fc6ec5eb1c1eee55b0609f01e7362	user-info	a2abd4e2f4c3b9b06d64bf1329359a02	versionator	2352c3fc97241f6a02042773c8287748
+_eclasses_=estack	686eaab303305a908fd57b2fd7617800	multilib	d410501a125f99ffb560b0c523cd3d1e	systemd	69be00334d73f9f50261554b94be0879	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	user	b0a0d4ca9e3f79c38f8f4143b8d5a2d8	user-info	a2abd4e2f4c3b9b06d64bf1329359a02	versionator	d3fb3ba33acc3bbbdc4d7970227c100d
 _md5_=8ca37225f92ffd3cc94ad6b4a4f43b0c
diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.6.13 b/metadata/md5-cache/sci-biology/foldingathome-7.6.13
index 2bb2d8ffb9db..4e248f4e524e 100644
--- a/metadata/md5-cache/sci-biology/foldingathome-7.6.13
+++ b/metadata/md5-cache/sci-biology/foldingathome-7.6.13
@@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 || ( dev-libs/openssl-compat:1.0.0 =dev-libs/openssl-1.0*
 RESTRICT=mirror bindist strip
 SLOT=0
 SRC_URI=https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v7.6/fahclient_7.6.13-64bit-release.tar.bz2
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	systemd	69be00334d73f9f50261554b94be0879	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	user	7b7fc6ec5eb1c1eee55b0609f01e7362	user-info	a2abd4e2f4c3b9b06d64bf1329359a02
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	systemd	69be00334d73f9f50261554b94be0879	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	user	b0a0d4ca9e3f79c38f8f4143b8d5a2d8	user-info	a2abd4e2f4c3b9b06d64bf1329359a02
 _md5_=35efc85acab21d56c5bb97f30da7e0f8
diff --git a/metadata/md5-cache/sci-biology/gatk-2.4 b/metadata/md5-cache/sci-biology/gatk-2.4
index 603e85726187..8d734c9bbf4b 100644
--- a/metadata/md5-cache/sci-biology/gatk-2.4
+++ b/metadata/md5-cache/sci-biology/gatk-2.4
@@ -9,5 +9,5 @@ LICENSE=MIT
 RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3
 SLOT=0
 SRC_URI=https://github.com/broadgsa/gatk/archive/2.4.tar.gz -> gatk-2.4.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	8d9cb415f1ca9fc7ebc5a74bacec300c	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	ec7a89849c84f93e9c6db27812923888	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd	versionator	2352c3fc97241f6a02042773c8287748	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	8d9cb415f1ca9fc7ebc5a74bacec300c	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	ec7a89849c84f93e9c6db27812923888	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=8afea474ed6c1f4ad5ac6d6a18c49542
diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1
index ca1b90a57bab..e4be029c80f6 100644
--- a/metadata/md5-cache/sci-biology/gibbs-3.1
+++ b/metadata/md5-cache/sci-biology/gibbs-3.1
@@ -10,5 +10,5 @@ LICENSE=GPL-2
 RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 )
 SLOT=0
 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=8d48efee68d1063803fccbc4c73a0f5d
diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 b/metadata/md5-cache/sci-biology/glimmer-3.02-r3
index 081c2d43b09c..abf16f2898a2 100644
--- a/metadata/md5-cache/sci-biology/glimmer-3.02-r3
+++ b/metadata/md5-cache/sci-biology/glimmer-3.02-r3
@@ -7,5 +7,5 @@ LICENSE=Artistic
 RDEPEND=app-shells/tcsh
 SLOT=0
 SRC_URI=http://www.cbcb.umd.edu/software/glimmer/glimmer302.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=94600a4de5a2dc02bc6652d958a2a034
diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02b b/metadata/md5-cache/sci-biology/glimmer-3.02b
index b86bc024099e..878211e37b6e 100644
--- a/metadata/md5-cache/sci-biology/glimmer-3.02b
+++ b/metadata/md5-cache/sci-biology/glimmer-3.02b
@@ -7,5 +7,5 @@ LICENSE=Artistic
 RDEPEND=app-shells/tcsh sci-biology/elph
 SLOT=0
 SRC_URI=https://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=6916d92c69198563f19b744f1e57dddc
diff --git a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
index b52955783041..8d4ae96c2a5b 100644
--- a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
+++ b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1
@@ -6,5 +6,5 @@ KEYWORDS=amd64 x86
 LICENSE=Artistic
 SLOT=0
 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.1.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=9fc33629a982f35b93c18da772894fdd
diff --git a/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 b/metadata/md5-cache/sci-biology/gmap-2015.12.31.5
deleted file mode 100644
index 9af4c172fcc5..000000000000
--- a/metadata/md5-cache/sci-biology/gmap-2015.12.31.5
+++ /dev/null
@@ -1,10 +0,0 @@
-DEFINED_PHASES=-
-DESCRIPTION=A Genomic Mapping and Alignment Program for mRNA and EST Sequences
-EAPI=6
-HOMEPAGE=http://research-pub.gene.com/gmap/
-KEYWORDS=~amd64 ~x86
-LICENSE=gmap
-SLOT=0
-SRC_URI=http://research-pub.gene.com/gmap/src/gmap-gsnap-2015-12-31.v5.tar.gz
-_eclasses_=estack	686eaab303305a908fd57b2fd7617800	versionator	2352c3fc97241f6a02042773c8287748
-_md5_=398e7f0670f5bd07e45f2780d7fe03cf
diff --git a/metadata/md5-cache/sci-biology/gmap-2020.10.27 b/metadata/md5-cache/sci-biology/gmap-2020.10.27
new file mode 100644
index 000000000000..487916a59aeb
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/gmap-2020.10.27
@@ -0,0 +1,9 @@
+DEFINED_PHASES=-
+DESCRIPTION=A Genomic Mapping and Alignment Program for mRNA and EST Sequences
+EAPI=7
+HOMEPAGE=http://research-pub.gene.com/gmap/
+KEYWORDS=~amd64 ~x86
+LICENSE=gmap
+SLOT=0
+SRC_URI=http://research-pub.gene.com/gmap/src/gmap-gsnap-2020-10-27.tar.gz
+_md5_=9c28013ebc925bd0d07b8a1b1f1dbc4d
diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1
index bd6e9790b098..fdc44ebf07be 100644
--- a/metadata/md5-cache/sci-biology/iedera-1.05-r1
+++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=ce77e1e27bd52fed2fd2af52744d6288
diff --git a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1 b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
index 6a43d0ab144a..4dfd56df9923 100644
--- a/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
+++ b/metadata/md5-cache/sci-biology/infernal-1.0.2-r1
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=mpi? ( virtual/mpi )
 SLOT=0
 SRC_URI=ftp://selab.janelia.org/pub/software/infernal/infernal-1.0.2.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=a3b1f788e8f5b38e41b3a9e38f91fe88
diff --git a/metadata/md5-cache/sci-biology/kalign-2.03-r2 b/metadata/md5-cache/sci-biology/kalign-2.03-r2
index 5cf82ff3669f..2e1b83ec1f92 100644
--- a/metadata/md5-cache/sci-biology/kalign-2.03-r2
+++ b/metadata/md5-cache/sci-biology/kalign-2.03-r2
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://debian/pool/main/k/kalign/kalign_2.03.orig.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=175d26382226c7bed2b44be485b01d01
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.43.1 b/metadata/md5-cache/sci-biology/kallisto-0.43.1
index 49ac043a12d8..f4c0bc3e20f0 100644
--- a/metadata/md5-cache/sci-biology/kallisto-0.43.1
+++ b/metadata/md5-cache/sci-biology/kallisto-0.43.1
@@ -8,5 +8,5 @@ LICENSE=BSD
 RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
 SLOT=0
 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz -> kallisto-0.43.1.tar.gz
-_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=b5fc562bf49e70db44b86bc5702ae9f2
diff --git a/metadata/md5-cache/sci-biology/kallisto-9999 b/metadata/md5-cache/sci-biology/kallisto-9999
index 23623d6cb185..948ef33da1f3 100644
--- a/metadata/md5-cache/sci-biology/kallisto-9999
+++ b/metadata/md5-cache/sci-biology/kallisto-9999
@@ -7,5 +7,5 @@ LICENSE=BSD
 PROPERTIES=live
 RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
 SLOT=0
-_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=b5fc562bf49e70db44b86bc5702ae9f2
diff --git a/metadata/md5-cache/sci-biology/lagan-2.0-r3 b/metadata/md5-cache/sci-biology/lagan-2.0-r4
index 3ea597b76b2d..f1bb29022e15 100644
--- a/metadata/md5-cache/sci-biology/lagan-2.0-r3
+++ b/metadata/md5-cache/sci-biology/lagan-2.0-r4
@@ -1,11 +1,11 @@
-DEFINED_PHASES=compile install prepare
+DEFINED_PHASES=configure install prepare
 DESCRIPTION=The LAGAN suite of tools for whole-genome multiple alignment of genomic DNA
-EAPI=6
+EAPI=7
 HOMEPAGE=http://lagan.stanford.edu/lagan_web/index.shtml
 KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=http://lagan.stanford.edu/lagan_web/lagan20.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
-_md5_=c9dbddd6a22f2e20ff25d0aa1e6f4280
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=c4b4e347541c85d423cac28e03a104d4
diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
index e77a49bcc3c0..c85baf9d1be9 100644
--- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
+++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=AGPL-3
 SLOT=0/0
 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=867c9b9e4eee26ad2a76ff6ff0594f52
diff --git a/metadata/md5-cache/sci-biology/mafft-7.305 b/metadata/md5-cache/sci-biology/mafft-7.305
index 5e409125d1ca..8a475e351f51 100644
--- a/metadata/md5-cache/sci-biology/mafft-7.305
+++ b/metadata/md5-cache/sci-biology/mafft-7.305
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos
 LICENSE=BSD
 SLOT=0
 SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.305-without-extensions-src.tgz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=75ed445f47bb6f3b4dd4a52cb903183f
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
index 99213cfa6fc7..fcdaf7651289 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=39ffb0025210075a8d7d7f6f81f8da56
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
index d0a2e43c52e6..22e1d5c77595 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
@@ -8,5 +8,5 @@ LICENSE=GPL-3
 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=dee50558d10e75ff9e96f4c3f177c55f
diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137
index 4e59101e3b2f..ed2e76c7c496 100644
--- a/metadata/md5-cache/sci-biology/mcl-14.137
+++ b/metadata/md5-cache/sci-biology/mcl-14.137
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=9779366f51f2fea08274072a9a019159
diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2
deleted file mode 100644
index 8caf09a15316..000000000000
--- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=configure install prepare setup test
-DEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
-DESCRIPTION=The MEME/MAST system - Motif discovery and search
-EAPI=6
-HOMEPAGE=http://meme-suite.org/tools/meme
-IUSE=debug doc examples mpi +python_single_target_python2_7
-KEYWORDS=~amd64 ~x86
-LICENSE=meme
-RDEPEND=python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] ) app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi )
-REQUIRED_USE=^^ ( python_single_target_python2_7 )
-SLOT=0
-SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	estack	686eaab303305a908fd57b2fd7617800	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	python-single-r1	d3100de905f978df912135806cf27188	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	versionator	2352c3fc97241f6a02042773c8287748
-_md5_=a4080439675628436c06de8db9f59c6e
diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2
index 288fb2d7b0d9..34bbccee4f5c 100644
--- a/metadata/md5-cache/sci-biology/mira-4.0.2
+++ b/metadata/md5-cache/sci-biology/mira-4.0.2
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dev-libs/boost[threads] dev-util/google-perftools
 SLOT=0
 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=e7b4c654f7c0055be7ef6347b5bdfb8a
diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30
index ef0ea5206874..f6c3a236c5dc 100644
--- a/metadata/md5-cache/sci-biology/mosaik-2.2.30
+++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=630686b35f8a549c580c5fd0e2cb02fc
diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
index 4e72f5821cea..56b0026a5a26 100644
--- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
+++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran
 SLOT=0
 SRC_URI=https://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	fortran-2	b4796813ccda91c9c0d3463fc90aa969	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	fortran-2	b4796813ccda91c9c0d3463fc90aa969	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=17f8b3c73710bbb746fc4cbfcf78b85d
diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
index 3e0ea4c8aabb..2e0a215ca835 100644
--- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
+++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=sys-libs/ncurses:0= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0= )
 SLOT=0
 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=a944448f568e57bb9f221cd1f437ab09
diff --git a/metadata/md5-cache/sci-biology/mummer-3.23 b/metadata/md5-cache/sci-biology/mummer-3.23
index 28118d138726..141ffb5ccfd1 100644
--- a/metadata/md5-cache/sci-biology/mummer-3.23
+++ b/metadata/md5-cache/sci-biology/mummer-3.23
@@ -8,5 +8,5 @@ LICENSE=Artistic
 RDEPEND=app-shells/tcsh dev-lang/perl
 SLOT=0
 SRC_URI=mirror://sourceforge/mummer/MUMmer3.23.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=c256f298b416306c1be7005e7877f7b9
diff --git a/metadata/md5-cache/sci-biology/muscle-3.8.31 b/metadata/md5-cache/sci-biology/muscle-3.8.31
index 5851abe7e01c..7eda392822b5 100644
--- a/metadata/md5-cache/sci-biology/muscle-3.8.31
+++ b/metadata/md5-cache/sci-biology/muscle-3.8.31
@@ -1,11 +1,11 @@
-DEFINED_PHASES=install prepare
+DEFINED_PHASES=configure install
 DESCRIPTION=Multiple sequence comparison by log-expectation
-EAPI=5
+EAPI=7
 HOMEPAGE=http://www.drive5.com/muscle/
 KEYWORDS=amd64 ppc x86
 LICENSE=public-domain
 RDEPEND=!sci-libs/libmuscle
 SLOT=0
 SRC_URI=http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=500ff424aff8c56744362bc87a3ff285
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=53bf57f6526fd17fc747a39406e13cef
diff --git a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
index d51081fbe4ef..919fbbf1eb37 100644
--- a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
+++ b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2
@@ -9,5 +9,5 @@ LICENSE=public-domain
 RDEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt )
 SLOT=0
 SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/ncbi.tar.gz -> ncbi-tools-2.2.26.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	prefix	c2993e4c430c1ee24f278983d6189501	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	prefix	c2993e4c430c1ee24f278983d6189501	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=8bcc533f96e3c3fe8bf6e5b090a4dacd
diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6 b/metadata/md5-cache/sci-biology/newick-utils-1.6
deleted file mode 100644
index f9cdb1fd46cd..000000000000
--- a/metadata/md5-cache/sci-biology/newick-utils-1.6
+++ /dev/null
@@ -1,10 +0,0 @@
-DEFINED_PHASES=test
-DESCRIPTION=Tools for processing phylogenetic trees
-EAPI=6
-HOMEPAGE=http://cegg.unige.ch/newick_utils
-KEYWORDS=~amd64 ~x86
-LICENSE=BSD
-RDEPEND=!dev-games/libnw
-SLOT=0
-SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz
-_md5_=f70356a582d317400bf4cd17b73beb16
diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
new file mode 100644
index 000000000000..a654e1b084e1
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
@@ -0,0 +1,14 @@
+BDEPEND=>=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEFINED_PHASES=configure install prepare
+DEPEND=xml? ( dev-libs/libxml2 )
+DESCRIPTION=Tools for processing phylogenetic trees
+EAPI=7
+HOMEPAGE=http://cegg.unige.ch/newick_utils
+IUSE=xml
+KEYWORDS=~amd64 ~x86
+LICENSE=BSD
+RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw
+SLOT=0
+SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=fac40fe86b457a75883a5eb465ce18d8
diff --git a/metadata/md5-cache/sci-biology/njplot-2.3-r2 b/metadata/md5-cache/sci-biology/njplot-2.3-r2
index bc4356e6ba31..844ec5a6f106 100644
--- a/metadata/md5-cache/sci-biology/njplot-2.3-r2
+++ b/metadata/md5-cache/sci-biology/njplot-2.3-r2
@@ -8,5 +8,5 @@ LICENSE=public-domain
 RDEPEND=sci-biology/ncbi-tools[X,static-libs] x11-libs/libXmu
 SLOT=0
 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/njplot/archive/njplot-2.3.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=c70b49c7f5e1a92f5169df372f9638c6
diff --git a/metadata/md5-cache/sci-biology/pals-1.0-r1 b/metadata/md5-cache/sci-biology/pals-1.0-r1
index 39149e4eea64..d6419049b1c4 100644
--- a/metadata/md5-cache/sci-biology/pals-1.0-r1
+++ b/metadata/md5-cache/sci-biology/pals-1.0-r1
@@ -6,5 +6,5 @@ KEYWORDS=amd64 x86
 LICENSE=public-domain
 SLOT=0
 SRC_URI=http://www.drive5.com/pals/pals_source.tar.gz -> pals-1.0.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=b0df20d47905df6a290c5fe2f79fd48b
diff --git a/metadata/md5-cache/sci-biology/paml-4.4c-r1 b/metadata/md5-cache/sci-biology/paml-4.4c-r1
deleted file mode 100644
index d2f6604ce281..000000000000
--- a/metadata/md5-cache/sci-biology/paml-4.4c-r1
+++ /dev/null
@@ -1,10 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DESCRIPTION=Phylogenetic Analysis by Maximum Likelihood
-EAPI=5
-HOMEPAGE=http://abacus.gene.ucl.ac.uk/software/paml.html
-KEYWORDS=amd64 x86
-LICENSE=free-noncomm
-SLOT=0
-SRC_URI=http://abacus.gene.ucl.ac.uk/software/paml4.4c.tar.gz
-_eclasses_=estack	686eaab303305a908fd57b2fd7617800	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	versionator	2352c3fc97241f6a02042773c8287748
-_md5_=c46d709378282d4ccbb567aaa00ee01a
diff --git a/metadata/md5-cache/sci-biology/paml-4.9j b/metadata/md5-cache/sci-biology/paml-4.9j
new file mode 100644
index 000000000000..5fb414d44c19
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/paml-4.9j
@@ -0,0 +1,10 @@
+DEFINED_PHASES=compile configure install
+DESCRIPTION=Phylogenetic Analysis by Maximum Likelihood
+EAPI=7
+HOMEPAGE=http://abacus.gene.ucl.ac.uk/software/paml.html
+KEYWORDS=~amd64 ~x86
+LICENSE=free-noncomm
+SLOT=0
+SRC_URI=http://abacus.gene.ucl.ac.uk/software/paml4.9j.tgz
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=236ce838eff8e04f8059e18110b3ff38
diff --git a/metadata/md5-cache/sci-biology/phrap-1.080812-r2 b/metadata/md5-cache/sci-biology/phrap-1.080812-r2
index 3e319274eacd..5302c990f72c 100644
--- a/metadata/md5-cache/sci-biology/phrap-1.080812-r2
+++ b/metadata/md5-cache/sci-biology/phrap-1.080812-r2
@@ -8,5 +8,5 @@ RDEPEND=dev-lang/perl dev-perl/Tk
 RESTRICT=fetch
 SLOT=0
 SRC_URI=phrap-1.080812-distrib.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=8f5aa73e6a49ffbd5804d4ddea05b2b8
diff --git a/metadata/md5-cache/sci-biology/phred-071220-r1 b/metadata/md5-cache/sci-biology/phred-071220-r1
index 4de5cc1e79e3..96de7513d543 100644
--- a/metadata/md5-cache/sci-biology/phred-071220-r1
+++ b/metadata/md5-cache/sci-biology/phred-071220-r1
@@ -7,5 +7,5 @@ LICENSE=phrap
 RESTRICT=fetch
 SLOT=0
 SRC_URI=phred-dist-071220.b-acd.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=6cb07f602eee34da61fd893818f30936
diff --git a/metadata/md5-cache/sci-biology/phylip-3.69-r1 b/metadata/md5-cache/sci-biology/phylip-3.69-r1
deleted file mode 100644
index e0527161957c..000000000000
--- a/metadata/md5-cache/sci-biology/phylip-3.69-r1
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=x11-libs/libXaw x11-base/xorg-proto
-DESCRIPTION=The PHYLogeny Inference Package
-EAPI=5
-HOMEPAGE=http://evolution.genetics.washington.edu/phylip.html
-KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos
-LICENSE=free-noncomm
-RDEPEND=x11-libs/libXaw
-SLOT=0
-SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.69.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
-_md5_=b42cd8579055d407d2b75b6dccdf2c7a
diff --git a/metadata/md5-cache/sci-biology/phylip-3.696-r1 b/metadata/md5-cache/sci-biology/phylip-3.696-r1
deleted file mode 100644
index 9775ba6ad842..000000000000
--- a/metadata/md5-cache/sci-biology/phylip-3.696-r1
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=x11-libs/libXaw x11-base/xorg-proto
-DESCRIPTION=The PHYLogeny Inference Package
-EAPI=5
-HOMEPAGE=http://evolution.genetics.washington.edu/phylip.html
-KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos
-LICENSE=BSD-2
-RDEPEND=x11-libs/libXaw
-SLOT=0
-SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.696.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
-_md5_=0e36eb92b11c05e1704acd5ce863d792
diff --git a/metadata/md5-cache/sci-biology/phylip-3.696-r2 b/metadata/md5-cache/sci-biology/phylip-3.696-r2
deleted file mode 100644
index 503d09539f49..000000000000
--- a/metadata/md5-cache/sci-biology/phylip-3.696-r2
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=x11-libs/libXaw !!dev-lang/elixir x11-base/xorg-proto
-DESCRIPTION=The PHYLogeny Inference Package
-EAPI=5
-HOMEPAGE=http://evolution.genetics.washington.edu/phylip.html
-KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos
-LICENSE=BSD-2
-RDEPEND=x11-libs/libXaw !!dev-lang/elixir
-SLOT=0
-SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.696.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
-_md5_=33ab1d7ce3016bdb569e9fd1a4fd5d90
diff --git a/metadata/md5-cache/sci-biology/phylip-3.698 b/metadata/md5-cache/sci-biology/phylip-3.698
new file mode 100644
index 000000000000..16b2a7820b71
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/phylip-3.698
@@ -0,0 +1,13 @@
+BDEPEND=app-arch/unzip
+DEFINED_PHASES=compile configure install prepare
+DEPEND=x11-libs/libXaw !dev-lang/elixir x11-base/xorg-proto
+DESCRIPTION=The PHYLogeny Inference Package
+EAPI=7
+HOMEPAGE=http://evolution.genetics.washington.edu/phylip.html
+KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos
+LICENSE=BSD-2
+RDEPEND=x11-libs/libXaw !dev-lang/elixir
+SLOT=0
+SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.698.zip
+_eclasses_=edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=f07202d933c062edd63457ffd0cde777
diff --git a/metadata/md5-cache/sci-biology/phyml-2.4.5-r3 b/metadata/md5-cache/sci-biology/phyml-2.4.5-r3
index 09c15ea1c563..d9c55ca037c9 100644
--- a/metadata/md5-cache/sci-biology/phyml-2.4.5-r3
+++ b/metadata/md5-cache/sci-biology/phyml-2.4.5-r3
@@ -6,5 +6,5 @@ KEYWORDS=amd64 ppc x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.lirmm.fr/~guindon/phyml_v2.4.5.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=fcca6fb4f9e88f5eb6a63a3ee0c79df7
diff --git a/metadata/md5-cache/sci-biology/picard-1.103 b/metadata/md5-cache/sci-biology/picard-1.103
index 85e88c8a587b..b4ee74846db4 100644
--- a/metadata/md5-cache/sci-biology/picard-1.103
+++ b/metadata/md5-cache/sci-biology/picard-1.103
@@ -10,5 +10,5 @@ RDEPEND=>=virtual/jre-1.6 dev-java/snappy:1.0 dev-java/cofoja:0 dev-java/commons
 RESTRICT=!test? ( test ) !test? ( test )
 SLOT=0
 SRC_URI=https://dev.gentoo.org/~ercpe/distfiles/sci-biology/picard/picard-1.103.tar.bz2
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	8d9cb415f1ca9fc7ebc5a74bacec300c	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	ec7a89849c84f93e9c6db27812923888	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	eapi7-ver	f9ec87e93172b25ce65a85303dc06964	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	java-ant-2	8d9cb415f1ca9fc7ebc5a74bacec300c	java-pkg-2	c4e6af2574fd1dc79b43a6e27af4b5fb	java-utils-2	ec7a89849c84f93e9c6db27812923888	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=09627e6bb74ee9997324bde01a56bcbd
diff --git a/metadata/md5-cache/sci-biology/piler-1.0-r1 b/metadata/md5-cache/sci-biology/piler-1.0-r1
index d4e2628f0af5..07a6e38d64dd 100644
--- a/metadata/md5-cache/sci-biology/piler-1.0-r1
+++ b/metadata/md5-cache/sci-biology/piler-1.0-r1
@@ -7,5 +7,5 @@ LICENSE=public-domain
 RDEPEND=|| ( sci-biology/muscle sci-libs/libmuscle ) sci-biology/pals
 SLOT=0
 SRC_URI=http://www.drive5.com/piler/piler_source.tar.gz -> piler-1.0.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=7b5a6d618aac08240cf165a04509c319
diff --git a/metadata/md5-cache/sci-biology/pilercr-1.0-r1 b/metadata/md5-cache/sci-biology/pilercr-1.0-r1
index fa33f62cd0e3..3852e4436d0b 100644
--- a/metadata/md5-cache/sci-biology/pilercr-1.0-r1
+++ b/metadata/md5-cache/sci-biology/pilercr-1.0-r1
@@ -6,5 +6,5 @@ KEYWORDS=amd64 x86
 LICENSE=public-domain
 SLOT=0
 SRC_URI=http://www.drive5.com/pilercr/pilercr1.06.tar.gz -> pilercr-1.0.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=d9f7901d3776c424cfb93782cc6ddafa
diff --git a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 b/metadata/md5-cache/sci-biology/plink-1.90_pre140514
index 57f0d85c60b0..98f52696c133 100644
--- a/metadata/md5-cache/sci-biology/plink-1.90_pre140514
+++ b/metadata/md5-cache/sci-biology/plink-1.90_pre140514
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 RDEPEND=sys-libs/zlib virtual/cblas virtual/lapack
 SLOT=0
 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> plink-1.90_pre140514.zip
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=570249dc23feeff7b47b3e81df358196
diff --git a/metadata/md5-cache/sci-biology/poa-2-r1 b/metadata/md5-cache/sci-biology/poa-2-r1
index 2f9c6dbf2be0..6e21d908da2c 100644
--- a/metadata/md5-cache/sci-biology/poa-2-r1
+++ b/metadata/md5-cache/sci-biology/poa-2-r1
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/poamsa/poaV2.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=d7bb9c94a05320cd21ff72a8beb56406
diff --git a/metadata/md5-cache/sci-biology/prank-140603 b/metadata/md5-cache/sci-biology/prank-140603
index 03557a83c138..7c4860b8c220 100644
--- a/metadata/md5-cache/sci-biology/prank-140603
+++ b/metadata/md5-cache/sci-biology/prank-140603
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-3
 SLOT=0
 SRC_URI=http://wasabiapp.org/download/prank/prank.source.140603.tgz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=17023476000980284365a9c0ed04a6f0
diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.7 b/metadata/md5-cache/sci-biology/primer3-2.3.7
index 97ec7d2dedc7..08c739ca0836 100644
--- a/metadata/md5-cache/sci-biology/primer3-2.3.7
+++ b/metadata/md5-cache/sci-biology/primer3-2.3.7
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~spar
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/project/primer3/primer3/2.3.7/primer3-2.3.7.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=e79ee4774138e651c83467c2b2cb2926
diff --git a/metadata/md5-cache/sci-biology/probcons-1.12-r1 b/metadata/md5-cache/sci-biology/probcons-1.12-r1
index 2b66e9174836..bfae1d74a4e5 100644
--- a/metadata/md5-cache/sci-biology/probcons-1.12-r1
+++ b/metadata/md5-cache/sci-biology/probcons-1.12-r1
@@ -7,5 +7,5 @@ LICENSE=public-domain
 RDEPEND=!sci-geosciences/gmt sci-visualization/gnuplot
 SLOT=0
 SRC_URI=http://probcons.stanford.edu/probcons_v1_12.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=19a24bd3c543d599d5b3392e66b7022e
diff --git a/metadata/md5-cache/sci-biology/prodigal-2.6.3 b/metadata/md5-cache/sci-biology/prodigal-2.6.3
index f00f72991e46..65fe2925757d 100644
--- a/metadata/md5-cache/sci-biology/prodigal-2.6.3
+++ b/metadata/md5-cache/sci-biology/prodigal-2.6.3
@@ -6,5 +6,5 @@ KEYWORDS=~amd64
 LICENSE=GPL-3
 SLOT=0
 SRC_URI=https://github.com/hyattpd/Prodigal/archive/v2.6.3.tar.gz -> prodigal-2.6.3.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=9cea3bcc55e864076d7e4b542f657f96
diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.39 b/metadata/md5-cache/sci-biology/profphd-1.0.39
deleted file mode 100644
index 7467be1a5b70..000000000000
--- a/metadata/md5-cache/sci-biology/profphd-1.0.39
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=dev-lang/perl
-DESCRIPTION=Secondary structure and solvent accessibility predictor
-EAPI=5
-HOMEPAGE=https://rostlab.org/owiki/index.php/PROFphd_-_Secondary_Structure,_Solvent_Accessibility_and_Transmembrane_Helices_Prediction
-KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
-LICENSE=GPL-2
-RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profphd-utils
-SLOT=0
-SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.39.tar.xz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=8e866cc812e134cdc7a7837e5b60aa21
diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.40 b/metadata/md5-cache/sci-biology/profphd-1.0.40
index 7b844c417c1f..64ed32ed3b57 100644
--- a/metadata/md5-cache/sci-biology/profphd-1.0.40
+++ b/metadata/md5-cache/sci-biology/profphd-1.0.40
@@ -1,12 +1,11 @@
-DEFINED_PHASES=compile install prepare
+DEFINED_PHASES=compile install
 DEPEND=dev-lang/perl
 DESCRIPTION=Secondary structure and solvent accessibility predictor
-EAPI=5
+EAPI=7
 HOMEPAGE=https://rostlab.org/owiki/index.php/PROFphd_-_Secondary_Structure,_Solvent_Accessibility_and_Transmembrane_Helices_Prediction
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=GPL-2
 RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profphd-utils
 SLOT=0
 SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.40.tar.xz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=b641a6cfd444fa4b83d5963246948636
+_md5_=7dd45e26103f891ba0f31da2c73ec2f0
diff --git a/metadata/md5-cache/sci-biology/psipred-3.4 b/metadata/md5-cache/sci-biology/psipred-3.4
index de9f7be089e8..a6413d5918a5 100644
--- a/metadata/md5-cache/sci-biology/psipred-3.4
+++ b/metadata/md5-cache/sci-biology/psipred-3.4
@@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh sci-biology/ncbi-tools sci-biology/update-blastdb
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.4.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	prefix	c2993e4c430c1ee24f278983d6189501	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	prefix	c2993e4c430c1ee24f278983d6189501	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=44623bcd0b50824824056739420b4873
diff --git a/metadata/md5-cache/sci-biology/psipred-3.5 b/metadata/md5-cache/sci-biology/psipred-3.5
index ec9119299b88..17403c4ed312 100644
--- a/metadata/md5-cache/sci-biology/psipred-3.5
+++ b/metadata/md5-cache/sci-biology/psipred-3.5
@@ -9,5 +9,5 @@ RDEPEND=app-shells/tcsh sci-biology/ncbi-tools sci-biology/update-blastdb
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.5.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	prefix	c2993e4c430c1ee24f278983d6189501	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	prefix	c2993e4c430c1ee24f278983d6189501	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=44623bcd0b50824824056739420b4873
diff --git a/metadata/md5-cache/sci-biology/pysam-0.16.0.1 b/metadata/md5-cache/sci-biology/pysam-0.16.0.1
index d87154c93c38..a1391b35a7eb 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.16.0.1
+++ b/metadata/md5-cache/sci-biology/pysam-0.16.0.1
@@ -12,5 +12,5 @@ REQUIRED_USE=|| ( python_targets_python3_6 python_targets_python3_7 python_targe
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.16.0.1.tar.gz -> pysam-0.16.0.1.tar.gz
-_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	multibuild	b2c915190b051f55a23b9354b9849847	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=distutils-r1	409cd1220f9f980d21980293a50e2a8e	multibuild	b2c915190b051f55a23b9354b9849847	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=c0f872ce3ed106718898376443d0cfe6
diff --git a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3 b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3
index bcfc73e3193e..56cb7f855262 100644
--- a/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3
+++ b/metadata/md5-cache/sci-biology/qrna-2.0.3c-r3
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 RDEPEND=dev-lang/perl sci-biology/hmmer:2
 SLOT=0
 SRC_URI=mirror://gentoo/qrna-2.0.3c.tar.bz2
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=fdc52d5355060d858ec78d793dc26d81
diff --git a/metadata/md5-cache/sci-biology/raxml-7.2.6 b/metadata/md5-cache/sci-biology/raxml-7.2.6
index 1d0c0e75575d..be226884b9e2 100644
--- a/metadata/md5-cache/sci-biology/raxml-7.2.6
+++ b/metadata/md5-cache/sci-biology/raxml-7.2.6
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 REQUIRED_USE=cpu_flags_x86_sse3
 SLOT=0
 SRC_URI=http://wwwkramer.in.tum.de/exelixis/software/RAxML-7.2.6.tar.bz2
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=f2b8e0b4e5701d9b20bcbf9151c9b868
diff --git a/metadata/md5-cache/sci-biology/recon-1.08 b/metadata/md5-cache/sci-biology/recon-1.08
index c18c9c178a76..0472534efdcb 100644
--- a/metadata/md5-cache/sci-biology/recon-1.08
+++ b/metadata/md5-cache/sci-biology/recon-1.08
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=http://www.repeatmasker.org/RECON-1.08.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=2ddd537d912c7c88b6f0b0d203a51613
diff --git a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
index 84417e19cc40..ff497cc3d3df 100644
--- a/metadata/md5-cache/sci-biology/rmblast-1.2-r1
+++ b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
@@ -8,5 +8,5 @@ LICENSE=OSL-2.1
 RDEPEND=dev-libs/boost
 SLOT=0
 SRC_URI=http://www.repeatmasker.org/rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz https://dev.gentoo.org/~mgorny/dist/rmblast-1.2-gcc47.patch.bz2
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=1283e94bf3a231a794a498d2769aaa7d
diff --git a/metadata/md5-cache/sci-biology/rnaview-20040713-r4 b/metadata/md5-cache/sci-biology/rnaview-20040713-r4
index 6404379bfda6..f62ee32c2f97 100644
--- a/metadata/md5-cache/sci-biology/rnaview-20040713-r4
+++ b/metadata/md5-cache/sci-biology/rnaview-20040713-r4
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=public-domain
 SLOT=0
 SRC_URI=mirror://gentoo/rnaview-20040713.tar.bz2
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=788c156d45287bef4f6aa876055bde4c
diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.20-r4 b/metadata/md5-cache/sci-biology/samtools-0.1.20-r4
index 44e0e43d0ed0..a045157d2525 100644
--- a/metadata/md5-cache/sci-biology/samtools-0.1.20-r4
+++ b/metadata/md5-cache/sci-biology/samtools-0.1.20-r4
@@ -9,5 +9,5 @@ LICENSE=MIT
 RDEPEND=sys-libs/ncurses:0= dev-lang/perl
 SLOT=0.1-legacy
 SRC_URI=https://github.com/samtools/samtools/archive/0.1.20.tar.gz -> samtools-0.1.20.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=6fc0899be7ff3370d9a4ac561b8f39a8
diff --git a/metadata/md5-cache/sci-biology/samtools-1.10 b/metadata/md5-cache/sci-biology/samtools-1.10
index 2fb071d50618..7aa8be1b8f4b 100644
--- a/metadata/md5-cache/sci-biology/samtools-1.10
+++ b/metadata/md5-cache/sci-biology/samtools-1.10
@@ -9,5 +9,5 @@ LICENSE=MIT
 RDEPEND=dev-lang/perl =sci-libs/htslib-1.10* sys-libs/ncurses:0=[unicode] sys-libs/zlib:=
 SLOT=0
 SRC_URI=mirror://sourceforge/samtools/samtools-1.10.tar.bz2
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=67d56fa48d3a475403ad1a726690e370
diff --git a/metadata/md5-cache/sci-biology/seaview-4.5.4 b/metadata/md5-cache/sci-biology/seaview-4.5.4
deleted file mode 100644
index 40ee9d0794a3..000000000000
--- a/metadata/md5-cache/sci-biology/seaview-4.5.4
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=install prepare
-DEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) virtual/pkgconfig
-DESCRIPTION=A graphical multiple sequence alignment editor
-EAPI=5
-HOMEPAGE=http://pbil.univ-lyon1.fr/software/seaview.html
-IUSE=+xft
-KEYWORDS=amd64 x86
-LICENSE=public-domain
-RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml
-SLOT=0
-SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.5.4.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=38cc02682d853c813df2b6e81cbb51c5
diff --git a/metadata/md5-cache/sci-biology/seaview-4.6 b/metadata/md5-cache/sci-biology/seaview-4.6
deleted file mode 100644
index 1d6129786e67..000000000000
--- a/metadata/md5-cache/sci-biology/seaview-4.6
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=install prepare
-DEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw:2 || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml virtual/pkgconfig
-DESCRIPTION=A graphical multiple sequence alignment editor
-EAPI=6
-HOMEPAGE=http://pbil.univ-lyon1.fr/software/seaview.html
-IUSE=+xft
-KEYWORDS=~amd64 ~x86
-LICENSE=public-domain
-RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw:2 || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml
-SLOT=0
-SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=1a6723f1ab0e67cc0d63dd54a902900f
diff --git a/metadata/md5-cache/sci-biology/seaview-4.6-r1 b/metadata/md5-cache/sci-biology/seaview-4.6-r1
new file mode 100644
index 000000000000..f36100dd7e7d
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/seaview-4.6-r1
@@ -0,0 +1,14 @@
+BDEPEND=virtual/pkgconfig
+DEFINED_PHASES=install prepare
+DEPEND=sci-biology/clustalw:2 sci-biology/phyml || ( sci-libs/libmuscle sci-biology/muscle ) sys-libs/zlib x11-libs/fltk:1[xft?] x11-libs/libX11 xft? ( x11-libs/libXft )
+DESCRIPTION=A graphical multiple sequence alignment editor
+EAPI=7
+HOMEPAGE=http://pbil.univ-lyon1.fr/software/seaview.html
+IUSE=+xft
+KEYWORDS=~amd64 ~x86
+LICENSE=public-domain
+RDEPEND=sci-biology/clustalw:2 sci-biology/phyml || ( sci-libs/libmuscle sci-biology/muscle ) sys-libs/zlib x11-libs/fltk:1[xft?] x11-libs/libX11 xft? ( x11-libs/libXft )
+SLOT=0
+SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.tar.gz
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_md5_=a742711d8523a4e49524662c12d647c2
diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0 b/metadata/md5-cache/sci-biology/seqan-2.4.0
index 505e06cfdf37..f7b945734a46 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.4.0
+++ b/metadata/md5-cache/sci-biology/seqan-2.4.0
@@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/s
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz
-_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multibuild	b2c915190b051f55a23b9354b9849847	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multibuild	b2c915190b051f55a23b9354b9849847	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=f4fd93f51141b17b6915c7b5b28cc1b4
diff --git a/metadata/md5-cache/sci-biology/seqan-9999 b/metadata/md5-cache/sci-biology/seqan-9999
index 6199bb08d405..2a910c9e2ff3 100644
--- a/metadata/md5-cache/sci-biology/seqan-9999
+++ b/metadata/md5-cache/sci-biology/seqan-9999
@@ -9,5 +9,5 @@ PROPERTIES=live
 RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
-_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multibuild	b2c915190b051f55a23b9354b9849847	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	git-r3	3e7ec3d6619213460c85e2aa48398441	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multibuild	b2c915190b051f55a23b9354b9849847	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=894809b96951695cbe345aa3e8298ed2
diff --git a/metadata/md5-cache/sci-biology/shrimp-2.2.3 b/metadata/md5-cache/sci-biology/shrimp-2.2.3
deleted file mode 100644
index 812ae5b7b020..000000000000
--- a/metadata/md5-cache/sci-biology/shrimp-2.2.3
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile install prepare pretend setup
-DEPEND=!sci-mathematics/cado-nfs
-DESCRIPTION=SHort Read Mapping Package
-EAPI=5
-HOMEPAGE=http://compbio.cs.toronto.edu/shrimp/
-IUSE=custom-cflags +cpu_flags_x86_sse2 +python_single_target_python2_7
-KEYWORDS=~amd64 ~x86
-LICENSE=shrimp
-RDEPEND=!sci-mathematics/cado-nfs python_single_target_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 >=dev-lang/python-exec-2:=[python_targets_python2_7] )
-REQUIRED_USE=^^ ( python_single_target_python2_7 )
-SLOT=0
-SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.src.tar.gz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-single-r1	d3100de905f978df912135806cf27188	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=98a7a2b9765ad5e245b1b7b9be67060b
diff --git a/metadata/md5-cache/sci-biology/sibsim4-0.20 b/metadata/md5-cache/sci-biology/sibsim4-0.20
index 4603f69f33ce..ecbc86d398ca 100644
--- a/metadata/md5-cache/sci-biology/sibsim4-0.20
+++ b/metadata/md5-cache/sci-biology/sibsim4-0.20
@@ -6,5 +6,5 @@ KEYWORDS=amd64 x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/sibsim4/SIBsim4-0.20.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=84a29c8972011ec4b86f3c8235a7b5d2
diff --git a/metadata/md5-cache/sci-biology/sim4-20030921-r2 b/metadata/md5-cache/sci-biology/sim4-20030921-r2
index 3e2239239fcf..effefc5bdf5a 100644
--- a/metadata/md5-cache/sci-biology/sim4-20030921-r2
+++ b/metadata/md5-cache/sci-biology/sim4-20030921-r2
@@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~ppc ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://gentoo/sim4-20030921.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=d9ac88a2e3ccc00187d880fcca7f5db2
diff --git a/metadata/md5-cache/sci-biology/stride-20011129-r1 b/metadata/md5-cache/sci-biology/stride-20011129-r1
index 4fbf108dd2e1..77333877a405 100644
--- a/metadata/md5-cache/sci-biology/stride-20011129-r1
+++ b/metadata/md5-cache/sci-biology/stride-20011129-r1
@@ -7,5 +7,5 @@ LICENSE=STRIDE
 RESTRICT=mirror bindist
 SLOT=0
 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz -> stride-20011129.tar.gz https://dev.gentoo.org/~jlec/distfiles/stride-20060723-update.patch.bz2
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=897f9fd1d73b5a7779f29a7ca161cb75
diff --git a/metadata/md5-cache/sci-biology/t-coffee-11.00-r2 b/metadata/md5-cache/sci-biology/t-coffee-11.00-r2
index 4e877f4b521b..e2fafab14300 100644
--- a/metadata/md5-cache/sci-biology/t-coffee-11.00-r2
+++ b/metadata/md5-cache/sci-biology/t-coffee-11.00-r2
@@ -7,5 +7,5 @@ LICENSE=GPL-2
 RDEPEND=sci-biology/clustalw sci-chemistry/tm-align
 SLOT=0
 SRC_URI=http://www.tcoffee.org/Packages/Beta/Latest/T-COFFEE_distribution_Version_11.00.4466924.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=5c54b109c5b8bef93adbc5f99ddd7114
diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2
index f4afb283b052..3b53877bc2fd 100644
--- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2
+++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2
@@ -10,5 +10,5 @@ RDEPEND=mpi? ( virtual/mpi )
 RESTRICT=test
 SLOT=0
 SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=8bd164fc83c9bb1d9a2e9559a47ff526
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
index d915ed9a5149..7b129ca97bc3 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 RDEPEND=x11-libs/wxGTK:3.0[X]
 SLOT=0
 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	wxwidgets	e1e6e1eb5b3d911b3abd712f611e2312
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	wxwidgets	e1e6e1eb5b3d911b3abd712f611e2312
 _md5_=ce129f3e61a849cfd3654e5a9fa4b17a
diff --git a/metadata/md5-cache/sci-biology/trnascan-se-1.31 b/metadata/md5-cache/sci-biology/trnascan-se-1.31
index 5836ee92c084..410933d22ba6 100644
--- a/metadata/md5-cache/sci-biology/trnascan-se-1.31
+++ b/metadata/md5-cache/sci-biology/trnascan-se-1.31
@@ -6,5 +6,5 @@ KEYWORDS=amd64 x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> trnascan-se-1.31.tar.gz
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=3f4bcdf31fe276f90a95e2f4b311deae
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40
index 1113b7efbff3..739f7d2136c5 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40
@@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 SLOT=0
 SRC_URI=http://drive5.com/uchime/uchime4.2.40_src.tar.gz
-_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
+_eclasses_=cmake-utils	77cd39e6009811bf97a59d91ffd5b54f	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	multiprocessing	cac3169468f893670dac3e7cb940e045	ninja-utils	132cbb376048d079b5a012f5467c4e7f	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
 _md5_=6adcbb8c658bdc3c40f797c61f5c58b0
diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
index 2f8ebcc7f268..54ef0dc822ad 100644
--- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
+++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
@@ -10,5 +10,5 @@ RDEPEND=dev-libs/openssl:0= media-libs/libpng:0= !<sci-biology/ucsc-genome-brows
 REQUIRED_USE=server? ( mysql )
 SLOT=0
 SRC_URI=http://hgdownload.cse.ucsc.edu/admin/jksrc.v260.zip
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	16783e418aca3ffa461d68310bf7ab12	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	webapp	16783e418aca3ffa461d68310bf7ab12	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=ecc35fd7ec196a9e5cce4c0c51af618f
diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1
index 3068537659a6..6dd2051551e8 100644
--- a/metadata/md5-cache/sci-biology/unafold-3.8-r1
+++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1
@@ -1,11 +1,13 @@
-DEFINED_PHASES=prepare
+DEFINED_PHASES=configure
+DEPEND=media-libs/freeglut media-libs/gd virtual/opengl
 DESCRIPTION=Unified Nucleic Acid Folding and hybridization package
-EAPI=5
+EAPI=7
 HOMEPAGE=http://mfold.rna.albany.edu/
 IUSE=custom-cflags
 KEYWORDS=~amd64 ~x86
 LICENSE=unafold
+RDEPEND=media-libs/freeglut media-libs/gd virtual/opengl
 SLOT=0
 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
-_md5_=f6e357557efc2f86eab0adadd32142ce
+_eclasses_=edos2unix	33e347e171066657f91f8b0c72ec8773	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	wrapper	4251d4c84c25f59094fd557e0063a974
+_md5_=140380fdaf468f37ce9bb27d0026ec8e
diff --git a/metadata/md5-cache/sci-biology/update-blastdb-12.0.0 b/metadata/md5-cache/sci-biology/update-blastdb-12.0.0
index 8541d94855d7..ff2efc513a39 100644
--- a/metadata/md5-cache/sci-biology/update-blastdb-12.0.0
+++ b/metadata/md5-cache/sci-biology/update-blastdb-12.0.0
@@ -7,5 +7,5 @@ LICENSE=public-domain
 RDEPEND=dev-lang/perl !sci-biology/ncbi-tools++
 SLOT=0
 SRC_URI=ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/12_0_0/ncbi_cxx--12_0_0.tar.gz
-_eclasses_=estack	686eaab303305a908fd57b2fd7617800	versionator	2352c3fc97241f6a02042773c8287748
+_eclasses_=estack	686eaab303305a908fd57b2fd7617800	versionator	d3fb3ba33acc3bbbdc4d7970227c100d
 _md5_=bc882208706b78e231cbfd78c7b5799e
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14
index e461a848a06f..f1d52271a51a 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.14
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14
@@ -9,5 +9,5 @@ LICENSE=LGPL-3
 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
 SLOT=0
 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=82adffd84f2a93745e683b498b79fbe8
diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10
index 4160a1004775..26166fbecaf6 100644
--- a/metadata/md5-cache/sci-biology/velvet-1.2.10
+++ b/metadata/md5-cache/sci-biology/velvet-1.2.10
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	flag-o-matic	09a8beb8e6a8e02dc1e1bd83ac353741	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=420632435bf1efe77241192fff993a20
diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
deleted file mode 100644
index 13166ef197df..000000000000
--- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8
+++ /dev/null
@@ -1,14 +0,0 @@
-DEFINED_PHASES=compile configure install prepare test unpack
-DEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) python? ( dev-lang/swig:0 ) >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 dev-lang/perl:=[-build(-)]
-DESCRIPTION=RNA secondary structure prediction and comparison
-EAPI=5
-HOMEPAGE=http://www.tbi.univie.ac.at/~ivo/RNA/
-IUSE=doc openmp python static-libs python_targets_python2_7
-KEYWORDS=~amd64 ~ppc ~x86
-LICENSE=vienna-rna
-RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] ) dev-lang/perl:=[-build(-)]
-REQUIRED_USE=python? ( || ( python_targets_python2_7 ) )
-SLOT=0
-SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	autotools-utils	95db0904ad0f62535e18e5ccb67cce5e	desktop	7fd20552ce4cc97e8acb132a499a7dd8	distutils-r1	409cd1220f9f980d21980293a50e2a8e	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	libtool	f143db5a74ccd9ca28c1234deffede96	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multibuild	b2c915190b051f55a23b9354b9849847	multilib	98584e405e2b0264d37e8f728327fed1	multiprocessing	cac3169468f893670dac3e7cb940e045	perl-functions	6ec4c4d8fc8324200f1c14e8d158c59b	perl-module	97206c028d9bdc9f248e022ac5c9fc83	preserve-libs	ef207dc62baddfddfd39a164d9797648	python-r1	8d03325e7e3cf3e1465d9c32031e2517	python-utils-r1	e41e32d357e5bdd388b5be2ce24f3883	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	unpacker	8ee8c1a2f31437d1766aac890d07a7f4	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	wrapper	4251d4c84c25f59094fd557e0063a974	xdg-utils	ff2ff954e6b17929574eee4efc5152ba
-_md5_=b2a6486af275e75c6365ab7eeba1e0bd
diff --git a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2 b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2
index 6666b4fda947..1da62a91f786 100644
--- a/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2
+++ b/metadata/md5-cache/sci-biology/wgs-assembler-7.0-r2
@@ -8,5 +8,5 @@ LICENSE=GPL-2
 RDEPEND=net-libs/libtirpc x11-libs/libXt !x11-terms/terminator app-shells/tcsh dev-perl/Log-Log4perl
 SLOT=0
 SRC_URI=mirror://sourceforge/wgs-assembler/wgs-7.0.tar.bz2
-_eclasses_=multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=8de6fdef210cdf37e56e086c61983865
diff --git a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
index 48d9cd1950d2..b831cce53fcc 100644
--- a/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
+++ b/metadata/md5-cache/sci-biology/wise-2.4.0_alpha
@@ -9,5 +9,5 @@ LICENSE=BSD
 RDEPEND=~sci-biology/hmmer-2.3.2
 SLOT=0
 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/wise2/wise2.4.0alpha.tar.gz https://dev.gentoo.org/~mgorny/dist/wise-2.4.0_alpha-patchset.tar.bz2
-_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	ed88001f77c6dd0d5f09e45c1a5b480e	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	db8b7ce9d0e663594bcb4a4e72131a79	multilib	98584e405e2b0264d37e8f728327fed1	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	2352c3fc97241f6a02042773c8287748	wrapper	4251d4c84c25f59094fd557e0063a974
+_eclasses_=desktop	7fd20552ce4cc97e8acb132a499a7dd8	edos2unix	33e347e171066657f91f8b0c72ec8773	epatch	e8f1ec13660dc2f44b32775765d85e42	estack	686eaab303305a908fd57b2fd7617800	eutils	2d5b3f4b315094768576b6799e4f926e	l10n	8cdd85e169b835d518bc2fd59f780d8e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	multilib	d410501a125f99ffb560b0c523cd3d1e	preserve-libs	ef207dc62baddfddfd39a164d9797648	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb	vcs-clean	2a0f74a496fa2b1552c4f3398258b7bf	versionator	d3fb3ba33acc3bbbdc4d7970227c100d	wrapper	4251d4c84c25f59094fd557e0063a974
 _md5_=5089373e8fa38f080134e22ddf59264c
diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2
index 8a59cc26dba0..1040681e898a 100644
--- a/metadata/md5-cache/sci-biology/yass-1.14-r2
+++ b/metadata/md5-cache/sci-biology/yass-1.14-r2
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dmalloc? ( dev-libs/dmalloc )
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz
-_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	98584e405e2b0264d37e8f728327fed1	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
+_eclasses_=autotools	7d999b62b8749fad43fff00620cedf47	libtool	f143db5a74ccd9ca28c1234deffede96	multilib	d410501a125f99ffb560b0c523cd3d1e	toolchain-funcs	605c126bed8d87e4378d5ff1645330cb
 _md5_=3a4ba9b4e7b8efec51cfc79d261fefd3
author	V3n3RiX <venerix@redcorelinux.org>	2020-11-25 22:39:15 +0000
committer	V3n3RiX <venerix@redcorelinux.org>	2020-11-25 22:39:15 +0000
commit	d934827bf44b7cfcf6711964418148fa60877668 (patch)
tree	0625f358789b5e015e49db139cc1dbc9be00428f /metadata/md5-cache/sci-biology
parent	2e34d110f164bf74d55fced27fe0000201b3eec5 (diff)