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authorV3n3RiX <venerix@koprulu.sector>2024-05-04 00:00:19 +0100
committerV3n3RiX <venerix@koprulu.sector>2024-05-04 00:00:19 +0100
commit7f3fecbb5b871825fe9632f46659869cab6a3769 (patch)
treedd2be4fe7ee3475ca4ad093698f0f8fd1e0965dc /metadata/md5-cache/sci-biology
parenta98588cfddf3d6e88a5f17d7f399b695163c7a85 (diff)
gentoo auto-resync : 04:05:2024 - 00:00:19
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/Manifest.gzbin22183 -> 22172 bytes
-rw-r--r--metadata/md5-cache/sci-biology/abyss-2.3.44
-rw-r--r--metadata/md5-cache/sci-biology/bfast-0.7.0a4
-rw-r--r--metadata/md5-cache/sci-biology/biogrep-1.0-r34
-rw-r--r--metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r14
-rw-r--r--metadata/md5-cache/sci-biology/emboss-6.6.0-r34
-rw-r--r--metadata/md5-cache/sci-biology/eugene-4.1d-r14
-rw-r--r--metadata/md5-cache/sci-biology/exonerate-2.2.0-r34
-rw-r--r--metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r14
-rw-r--r--metadata/md5-cache/sci-biology/iedera-1.05-r24
-rw-r--r--metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r14
-rw-r--r--metadata/md5-cache/sci-biology/maq-0.7.1-r44
-rw-r--r--metadata/md5-cache/sci-biology/maqview-0.2.5-r54
-rw-r--r--metadata/md5-cache/sci-biology/mcl-14.1374
-rw-r--r--metadata/md5-cache/sci-biology/newick-utils-1.6-r24
-rw-r--r--metadata/md5-cache/sci-biology/tree-puzzle-5.2-r14
-rw-r--r--metadata/md5-cache/sci-biology/treeviewx-0.5.1-r34
-rw-r--r--metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p44
-rw-r--r--metadata/md5-cache/sci-biology/unafold-3.8-r14
-rw-r--r--metadata/md5-cache/sci-biology/vcftools-0.1.164
-rw-r--r--metadata/md5-cache/sci-biology/yass-1.14-r34
36 files changed, 70 insertions, 70 deletions
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index bb463fb251d2..bd682087bf45 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
Binary files differ
diff --git a/metadata/md5-cache/sci-biology/abyss-2.3.4 b/metadata/md5-cache/sci-biology/abyss-2.3.4
index 413f7d31f303..898e7b325418 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.3.4
+++ b/metadata/md5-cache/sci-biology/abyss-2.3.4
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure prepare pretend setup
DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3 misc-haskell? ( dev-lang/ghc )
DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
@@ -11,5 +11,5 @@ LICENSE=GPL-3
RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3
SLOT=0
SRC_URI=https://github.com/bcgsc/abyss/archive/2.3.4.tar.gz -> abyss-2.3.4.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=498079fc466ad15118faea6d1635cce8
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index 2711fd7a4e18..9593fd22378d 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=prepare
DESCRIPTION=Blat-like Fast Accurate Search Tool
EAPI=7
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/XML-Simple
RESTRICT=test
SLOT=0
SRC_URI=https://downloads.sourceforge.net/bfast/bfast-0.7.0a.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=de9f50a6363291c4ea76ed050d9b2dfb
diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r3 b/metadata/md5-cache/sci-biology/biogrep-1.0-r3
index 4ba658b2fe15..fa358da4a700 100644
--- a/metadata/md5-cache/sci-biology/biogrep-1.0-r3
+++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=install prepare
DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs
EAPI=8
@@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86
LICENSE=GPL-2
SLOT=0
SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf )
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=18fc653ace8feaf53e4d1c1818b7b00c
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1
index bc3be0b9ace7..d2db631c740e 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=install prepare
DEPEND=dev-libs/argtable
DESCRIPTION=Scalable multiple alignment of protein sequences
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RDEPEND=dev-libs/argtable
SLOT=0
SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=e2928c88a8676586ff3c5e4a7f534608
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1
index 526a1e33b5c8..3459cbb84a3c 100644
--- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Applications from the CBS group
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=56469e1c3bb7c4baac8ad99638b59ff0
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1
index 4014e3a43ed4..ae69904a3989 100644
--- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=864a13621791118f794da4601dcde749
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1
index c0547eca2782..9f211aa0a913 100644
--- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=af29c98cab7134ba05c6d874e37d95dc
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1
index 2d04548b979d..af613116dbfb 100644
--- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=677a5e171c80e94969c1ab9c0b55e283
diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1
index 4d9372f93221..9da621a1e195 100644
--- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=e0ca10c2776835b0cd20c1b0f0721a1a
diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1
index 1947ce701731..796be0032bbb 100644
--- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=a33d45b5be798e7ebfcef8c59a300c88
diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1
index 50e940cace65..91ca34f7f02f 100644
--- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=95026ca22c2bacedf52a70b4428e7753
diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1
index 150f9753af06..9519ca868f98 100644
--- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=fb64fb071ec661ab550e0b33bc78b536
diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1
index 98f09f9fcfda..a6410d7750a7 100644
--- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=06b3cb4ecb53ada6b96c0f8fe91680e9
diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1
index 760042e49d6b..70826ecb40a8 100644
--- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=sys-libs/ncurses:= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=sys-libs/ncurses:= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=b6d66fbfe89f6c64f635551357dc90f4
diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1
index 78633fd798ca..75037b8ba724 100644
--- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=93c762366f9cfe8fbfdffd0fdc0483d5
diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1
index 0bf12c59fd34..3061aa72f943 100644
--- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Protein signature add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=193e23282bfd7f7751d7e37988a0ec44
diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1
index 2aa18087641e..61b6f5b4542e 100644
--- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Protein structure add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=c54138383c80476f9d515e5e2a33acaf
diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1
index a885683c9f8a..ec079daffff4 100644
--- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Transmembrane protein display
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=30ddf1c7471e11d692477ffa5a3a9956
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1
index 4a08c9f5ef4d..6cfb9ed1b6e4 100644
--- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1
+++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=ba0cdfe4fa4ef35b15cb45a53f81f3b7
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r3 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r3
index 82f7d267749b..e6147efee5e7 100644
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r3
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install postinst prepare
DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package
@@ -12,5 +12,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci
RDEPEND=!dev-build/cons !games-action/xbomber dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
SLOT=0
SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz https://dev.gentoo.org/~soap/distfiles/emboss-6.6.0-patches-r1.tar.xz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 readme.gentoo-r1 204091a2cde6179cd9d3db26d09412d3 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d emboss-r3 ed4c0b270092039c992b771a26ca322a flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 readme.gentoo-r1 204091a2cde6179cd9d3db26d09412d3 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=70b903dc25a6c63638148281283a607c
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d-r1 b/metadata/md5-cache/sci-biology/eugene-4.1d-r1
index c8c5f16f67f2..7b8f98138d06 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1d-r1
+++ b/metadata/md5-cache/sci-biology/eugene-4.1d-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=prepare
DEPEND=media-libs/gd[png] media-libs/libpng:=
DESCRIPTION=Prokaryotic and Eukaryotic gene predictor
@@ -11,5 +11,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:=
RESTRICT=test
SLOT=0
SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=88a096386941104cea7615974ecef526
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3
index 72b0b839e9cb..fee03a66fbeb 100644
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=dev-libs/glib:2
DESCRIPTION=Generic tool for pairwise sequence comparison
@@ -13,5 +13,5 @@ REQUIRED_USE=test? ( utils )
RESTRICT=!test? ( test )
SLOT=0
SRC_URI=https://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=10bdf3d183405e86dbde847391344239
diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1
index 5c272c9ce262..a059e4bcd092 100644
--- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1
+++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14-r1
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=prepare
DEPEND=sci-biology/libgtextutils:=
DESCRIPTION=Tools for Short Read FASTA/FASTQ file processing
@@ -10,5 +10,5 @@ LICENSE=AGPL-3
RDEPEND=sci-biology/libgtextutils:= dev-perl/PerlIO-gzip dev-perl/GDGraph sci-visualization/gnuplot
SLOT=0
SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=e0ed8e935eca944dc874fee38c4435ad
diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r2 b/metadata/md5-cache/sci-biology/iedera-1.05-r2
index 30a58eb3e33a..494e88f52cca 100644
--- a/metadata/md5-cache/sci-biology/iedera-1.05-r2
+++ b/metadata/md5-cache/sci-biology/iedera-1.05-r2
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=prepare
DESCRIPTION=Subset seed design tool for DNA sequence alignment
EAPI=8
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
LICENSE=GPL-2
SLOT=0
SRC_URI=https://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=c1df71458cdeda01ad17b744ef31dc36
diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1
index f45578e7b5f5..24021b579a20 100644
--- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1
+++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=install prepare
DESCRIPTION=Gordon Text utils Library
EAPI=8
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
LICENSE=AGPL-3
SLOT=0/0
SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=bf69c3370f31858d1ff072c30305ca99
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r4 b/metadata/md5-cache/sci-biology/maq-0.7.1-r4
index 8373c167ca38..2183f75a627e 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r4
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r4
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=install prepare
DEPEND=sys-libs/zlib
DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes
@@ -10,5 +10,5 @@ LICENSE=GPL-3
RDEPEND=sys-libs/zlib
SLOT=0
SRC_URI=https://downloads.sourceforge.net/maq/maq-0.7.1.tar.bz2 https://downloads.sourceforge.net/maq/calib-36.dat.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=3ce78ae7f9c21ec3fcfe0096f0b6f814
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r5 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5
index db06092be15f..c0b8910b5265 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r5
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r5
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=prepare
DEPEND=media-libs/freeglut sys-libs/zlib
DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler
@@ -10,5 +10,5 @@ LICENSE=GPL-3
RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
SLOT=0
SRC_URI=https://downloads.sourceforge.net/maq/maqview-0.2.5.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=ff137cbddb3451a621dbf212ee4a6fe8
diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137
index 79e6c86fe86b..ba3564cbbae0 100644
--- a/metadata/md5-cache/sci-biology/mcl-14.137
+++ b/metadata/md5-cache/sci-biology/mcl-14.137
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure prepare
DESCRIPTION=A Markov Cluster Algorithm implementation
EAPI=7
@@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86
LICENSE=GPL-2
SLOT=0
SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=9779366f51f2fea08274072a9a019159
diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r2 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r2
index ac055212ed02..9ce3ea840c41 100644
--- a/metadata/md5-cache/sci-biology/newick-utils-1.6-r2
+++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r2
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install prepare
DEPEND=xml? ( dev-libs/libxml2 )
DESCRIPTION=Tools for processing phylogenetic trees
@@ -11,5 +11,5 @@ LICENSE=BSD
RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw
SLOT=0
SRC_URI=https://web.archive.org/web/20120126210029if_/http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=f8324170fb990264d927dcd509f5898e
diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1
index 80cec41767c1..70ec005ab914 100644
--- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1
+++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=compile configure install prepare
DEPEND=mpi? ( virtual/mpi )
DESCRIPTION=Maximum likelihood analysis for nucleotide, amino acid, and two-state data
@@ -12,5 +12,5 @@ RDEPEND=mpi? ( virtual/mpi )
RESTRICT=test
SLOT=0
SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=311ab90a26514547300841edfb24e436
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
index d74d609addb6..e5faf8c75aa6 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure prepare
DEPEND=x11-libs/wxGTK:3.0[X]
DESCRIPTION=A phylogenetic tree viewer
@@ -10,5 +10,5 @@ LICENSE=GPL-2
RDEPEND=x11-libs/wxGTK:3.0[X]
SLOT=0
SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5
_md5_=c7a6fb1f3ee6436d674328487c021a24
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4
index e869996533c3..0f15e7917329 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1.20100823_p4
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure install postinst postrm preinst prepare
DEPEND=x11-libs/wxGTK:3.2-gtk3[X]
DESCRIPTION=A phylogenetic tree viewer
@@ -11,5 +11,5 @@ LICENSE=GPL-2
RDEPEND=x11-libs/wxGTK:3.2-gtk3[X]
SLOT=0
SRC_URI=https://github.com/rdmpage/treeviewx/archive/7e4d0e96dfdde51a92a1634b41d7284142a19afa.tar.gz -> treeviewx-0.5.1.20100823_p4.tar.gz mirror://debian/pool/main/t/treeviewx/treeviewx_0.5.1+git20100823.7e4d0e9-4.debian.tar.xz https://dev.gentoo.org/~pacho/treeviewx/treeviewx_128.png
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d desktop 021728fdc1b03b36357dbc89489e0f0d flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084 wxwidgets 9a707a3f9f1ea7aa703b1e46552291e5 xdg 4a14c5c24f121e7da66e5aab4a168c6e xdg-utils baea6080dd821f5562d715887954c9d3
_md5_=717085213272cc84290050e8716b9f37
diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1
index e0d95cafe40d..85597b285230 100644
--- a/metadata/md5-cache/sci-biology/unafold-3.8-r1
+++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1
@@ -1,4 +1,4 @@
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+BDEPEND=dev-build/autoconf-archive >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure prepare
DEPEND=media-libs/freeglut media-libs/gd virtual/opengl
DESCRIPTION=Unified Nucleic Acid Folding and hybridization package
@@ -10,5 +10,5 @@ LICENSE=unafold
RDEPEND=media-libs/freeglut media-libs/gd virtual/opengl
SLOT=0
SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=14b670b7c0432a030b888744c81bd066
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.16 b/metadata/md5-cache/sci-biology/vcftools-0.1.16
index 2587522576a8..58b215cbdc2f 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.16
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.16
@@ -1,4 +1,4 @@
-BDEPEND=virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=virtual/pkgconfig >=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure prepare
DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
DESCRIPTION=Tools for working with VCF (Variant Call Format) files
@@ -11,5 +11,5 @@ LICENSE=LGPL-3
RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
SLOT=0
SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 perl-functions c3fca037246e877693badea0df3b0ef8 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d flag-o-matic 288c54efeb5e2aa70775e39032695ad4 gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 perl-functions c3fca037246e877693badea0df3b0ef8 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=faeb202e0aded0cb660ea87d6d7be81b
diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r3 b/metadata/md5-cache/sci-biology/yass-1.14-r3
index d706ca42f055..82c4e37bed37 100644
--- a/metadata/md5-cache/sci-biology/yass-1.14-r3
+++ b/metadata/md5-cache/sci-biology/yass-1.14-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20240116 || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
+BDEPEND=>=app-portage/elt-patches-20240116 sys-devel/gnuconfig || ( >=dev-build/automake-1.16.5:1.16 ) || ( >=dev-build/autoconf-2.72-r1:2.72 >=dev-build/autoconf-2.71-r6:2.71 ) >=dev-build/libtool-2.4.7-r3
DEFINED_PHASES=configure prepare
DEPEND=dmalloc? ( dev-libs/dmalloc )
DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds
@@ -11,5 +11,5 @@ LICENSE=GPL-2
RDEPEND=dmalloc? ( dev-libs/dmalloc )
SLOT=0
SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz
-_eclasses_=autotools 3af8f60c4bdb23e738db506a630898ee gnuconfig b6b3e92f8b8c996400074b5f61a59256 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
+_eclasses_=autotools dc70c1dc473b68317fc4a86f5fbfc57d gnuconfig a397adda6984a4c423e28ac274c1ba98 libtool 5f49a16f67f81bdf873e3d1f10b10001 multilib c19072c3cd7ac5cb21de013f7e9832e0 toolchain-funcs e56c7649b804f051623c8bc1a1c44084
_md5_=9e0eb1b35801ce703a9a397be6421d47