gentoo auto-resync : 07:02:2023 - 15:25:18

10 files changed, 28 insertions, 28 deletions

diff --git a/metadata/md5-cache/sci-biology/HTSeq-2.0.2 b/metadata/md5-cache/sci-biology/HTSeq-2.0.2
index 54b6e12c7619..ed9445ddc215 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-2.0.2
+++ b/metadata/md5-cache/sci-biology/HTSeq-2.0.2
@@ -1,4 +1,4 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.2.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?]
 DEFINED_PHASES=compile configure install prepare test
 DEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] )
 DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
@@ -8,10 +8,10 @@ INHERIT=distutils-r1 flag-o-matic
 IUSE=test test python_targets_python3_9 python_targets_python3_10
 KEYWORDS=~amd64
 LICENSE=GPL-3+
-RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 )
+RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 )
 REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 )
 RESTRICT=!test? ( test ) !test? ( test )
 SLOT=0
 SRC_URI=https://github.com/htseq/htseq/archive/release_2.0.2.tar.gz -> HTSeq-2.0.2.gh.tar.gz
-_eclasses_=distutils-r1	dcd5f48510105eb95e550ab968147365	flag-o-matic	69394e25812406faa1f90edaf4969395	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	8d5c1c4ecef47fa1b4576a718c620d1d	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
+_eclasses_=distutils-r1	5805686d488d821ed8d8d9367942c0f3	flag-o-matic	69394e25812406faa1f90edaf4969395	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	429bfd4e8d8e39db5385ba5744f30788	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
 _md5_=a4190a44788cf7ade175eecc1b463758
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
index 49578b7c6845..424fbcc49d6a 100644
--- a/metadata/md5-cache/sci-biology/HTSeq-9999
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -1,4 +1,4 @@
-BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.1.3[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-vcs/git-1.8.2.1[curl]
+BDEPEND=>=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/pytest-7.2.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-vcs/git-1.8.2.1[curl]
 DEFINED_PHASES=compile configure install prepare test unpack
 DEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] test? ( dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] )
 DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
@@ -8,9 +8,9 @@ INHERIT=distutils-r1 flag-o-matic git-r3
 IUSE=test test python_targets_python3_9 python_targets_python3_10
 LICENSE=GPL-3+
 PROPERTIES=live
-RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 )
+RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] sci-biology/pysam[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 )
 REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 )
 RESTRICT=!test? ( test ) !test? ( test )
 SLOT=0
-_eclasses_=distutils-r1	dcd5f48510105eb95e550ab968147365	flag-o-matic	69394e25812406faa1f90edaf4969395	git-r3	2347f8fe2d392b2a091191f94be37e6f	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	8d5c1c4ecef47fa1b4576a718c620d1d	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
+_eclasses_=distutils-r1	5805686d488d821ed8d8d9367942c0f3	flag-o-matic	69394e25812406faa1f90edaf4969395	git-r3	2347f8fe2d392b2a091191f94be37e6f	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	429bfd4e8d8e39db5385ba5744f30788	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
 _md5_=a4190a44788cf7ade175eecc1b463758
diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 743e7e52436c..02b06d1906e0 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.15.1 b/metadata/md5-cache/sci-biology/bcftools-1.15.1
index 716e92dd1c12..848c579debf2 100644
--- a/metadata/md5-cache/sci-biology/bcftools-1.15.1
+++ b/metadata/md5-cache/sci-biology/bcftools-1.15.1
@@ -1,6 +1,6 @@
-BDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 )
+BDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 )
 DEFINED_PHASES=configure prepare setup
-DEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 )
+DEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 )
 DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files
 EAPI=8
 HOMEPAGE=http://www.htslib.org
@@ -8,9 +8,9 @@ INHERIT=python-single-r1
 IUSE=python_single_target_python3_9 python_single_target_python3_10
 KEYWORDS=~amd64 ~x86
 LICENSE=MIT
-RDEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 )
+RDEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) =sci-libs/htslib-1.15.1*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 )
 REQUIRED_USE=^^ ( python_single_target_python3_9 python_single_target_python3_10 )
 SLOT=0
 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.15.1/bcftools-1.15.1.tar.bz2
-_eclasses_=multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	python-single-r1	75118e916668a74c660a13b0ecb22562	python-utils-r1	8d5c1c4ecef47fa1b4576a718c620d1d	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
+_eclasses_=multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	python-single-r1	75118e916668a74c660a13b0ecb22562	python-utils-r1	429bfd4e8d8e39db5385ba5744f30788	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
 _md5_=7742e2f0c1176dfee3d3c8236b98c037
diff --git a/metadata/md5-cache/sci-biology/bcftools-1.16 b/metadata/md5-cache/sci-biology/bcftools-1.16
index 3efed5933b5e..31b4e22b6f14 100644
--- a/metadata/md5-cache/sci-biology/bcftools-1.16
+++ b/metadata/md5-cache/sci-biology/bcftools-1.16
@@ -1,6 +1,6 @@
-BDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1:3.11 )
+BDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
 DEFINED_PHASES=configure prepare setup
-DEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1:3.11 )
+DEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
 DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files
 EAPI=8
 HOMEPAGE=http://www.htslib.org
@@ -8,9 +8,9 @@ INHERIT=python-single-r1
 IUSE=python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11
 KEYWORDS=~amd64 ~x86
 LICENSE=MIT
-RDEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1:3.11 )
+RDEPEND=dev-lang/perl python_single_target_python3_9? ( dev-python/matplotlib[python_targets_python3_9(-)] ) python_single_target_python3_10? ( dev-python/matplotlib[python_targets_python3_10(-)] ) python_single_target_python3_11? ( dev-python/matplotlib[python_targets_python3_11(-)] ) =sci-libs/htslib-1.16*:= sys-libs/zlib python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_single_target_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
 REQUIRED_USE=^^ ( python_single_target_python3_9 python_single_target_python3_10 python_single_target_python3_11 )
 SLOT=0
 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.16/bcftools-1.16.tar.bz2
-_eclasses_=multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	python-single-r1	75118e916668a74c660a13b0ecb22562	python-utils-r1	8d5c1c4ecef47fa1b4576a718c620d1d	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
+_eclasses_=multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	python-single-r1	75118e916668a74c660a13b0ecb22562	python-utils-r1	429bfd4e8d8e39db5385ba5744f30788	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
 _md5_=5271780ace94107aae357a985f191e14
diff --git a/metadata/md5-cache/sci-biology/bedtools-2.30.0 b/metadata/md5-cache/sci-biology/bedtools-2.30.0
index f5178891a2f9..a031646e6ebd 100644
--- a/metadata/md5-cache/sci-biology/bedtools-2.30.0
+++ b/metadata/md5-cache/sci-biology/bedtools-2.30.0
@@ -1,4 +1,4 @@
-BDEPEND=|| ( >=dev-lang/python-3.11.1:3.11 >=dev-lang/python-3.10.9:3.10 >=dev-lang/python-3.9.16:3.9 ) test? ( >=sci-biology/samtools-1.10:0 )
+BDEPEND=|| ( >=dev-lang/python-3.11.1-r1:3.11 >=dev-lang/python-3.10.9-r1:3.10 >=dev-lang/python-3.9.16-r1:3.9 ) test? ( >=sci-biology/samtools-1.10:0 )
 DEFINED_PHASES=configure install setup
 DEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
 DESCRIPTION=Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2 app-arch/xz-utils sys-libs/zlib
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools-2.30.0.tar.gz
-_eclasses_=multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	python-any-r1	d2955aaac8daaaa69fcc6dc93ed19f29	python-utils-r1	8d5c1c4ecef47fa1b4576a718c620d1d	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
+_eclasses_=multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	python-any-r1	d2955aaac8daaaa69fcc6dc93ed19f29	python-utils-r1	429bfd4e8d8e39db5385ba5744f30788	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
 _md5_=a8923ba46d6cb3a1840954c1b014568c
diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.7 b/metadata/md5-cache/sci-biology/biopandas-0.2.7
index 818538b3914a..5dedc524b004 100644
--- a/metadata/md5-cache/sci-biology/biopandas-0.2.7
+++ b/metadata/md5-cache/sci-biology/biopandas-0.2.7
@@ -1,4 +1,4 @@
-BDEPEND=test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+BDEPEND=test? ( dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/nose-1.3.7_p20221026[python_targets_python3_9(-)?,python_targets_python3_10(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?]
 DEFINED_PHASES=compile configure install prepare test
 DESCRIPTION=Molecular Structures in Pandas DataFrames
 EAPI=8
@@ -7,10 +7,10 @@ INHERIT=distutils-r1
 IUSE=test test python_targets_python3_9 python_targets_python3_10
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=BSD
-RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 )
+RDEPEND=dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pandas[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/scipy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 )
 REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 )
 RESTRICT=!test? ( test ) !test? ( test )
 SLOT=0
 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.7.tar.gz
-_eclasses_=distutils-r1	dcd5f48510105eb95e550ab968147365	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	8d5c1c4ecef47fa1b4576a718c620d1d	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
+_eclasses_=distutils-r1	5805686d488d821ed8d8d9367942c0f3	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	429bfd4e8d8e39db5385ba5744f30788	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
 _md5_=90f9103bd8f00cfb13d8821454edb4b8
diff --git a/metadata/md5-cache/sci-biology/biopython-1.79 b/metadata/md5-cache/sci-biology/biopython-1.79
index 4feb61998b31..1671f40b8d17 100644
--- a/metadata/md5-cache/sci-biology/biopython-1.79
+++ b/metadata/md5-cache/sci-biology/biopython-1.79
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/flex python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?]
+BDEPEND=sys-devel/flex python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?]
 DEFINED_PHASES=compile configure install postinst prepare test
 DEPEND=dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_9(-)?,python_targets_python3_10(-)?]
 DESCRIPTION=Python modules for computational molecular biology
@@ -8,9 +8,9 @@ INHERIT=distutils-r1 optfeature
 IUSE=python_targets_python3_9 python_targets_python3_10
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=HPND
-RDEPEND=dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 )
+RDEPEND=dev-python/matplotlib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/networkx[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/numpy[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/rdflib[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pygraphviz[python_targets_python3_9(-)?,python_targets_python3_10(-)?] >=dev-python/reportlab-3.5.13-r1[python_targets_python3_9(-)?,python_targets_python3_10(-)?] dev-python/pydot[python_targets_python3_9(-)?,python_targets_python3_10(-)?] python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 )
 REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 )
 SLOT=0
 SRC_URI=mirror://pypi/b/biopython/biopython-1.79.tar.gz
-_eclasses_=distutils-r1	dcd5f48510105eb95e550ab968147365	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	optfeature	1a2157392a869265b2afcb63a26c12ac	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	8d5c1c4ecef47fa1b4576a718c620d1d	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
+_eclasses_=distutils-r1	5805686d488d821ed8d8d9367942c0f3	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	optfeature	1a2157392a869265b2afcb63a26c12ac	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	429bfd4e8d8e39db5385ba5744f30788	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
 _md5_=6074a70b897177a12216367dcd1352a1
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.4.4 b/metadata/md5-cache/sci-biology/bowtie-2.4.4
index 39a77dbf9b76..6407d449ae25 100644
--- a/metadata/md5-cache/sci-biology/bowtie-2.4.4
+++ b/metadata/md5-cache/sci-biology/bowtie-2.4.4
@@ -1,6 +1,6 @@
 BDEPEND=app-arch/unzip
 DEFINED_PHASES=compile install setup
-DEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) dev-lang/perl sys-libs/zlib
+DEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) dev-lang/perl sys-libs/zlib
 DESCRIPTION=Popular short read aligner for Next-generation sequencing data
 EAPI=8
 HOMEPAGE=http://bowtie-bio.sourceforge.net/bowtie2/
@@ -8,9 +8,9 @@ INHERIT=python-single-r1 toolchain-funcs
 IUSE=cpu_flags_x86_sse2 examples python_single_target_python3_9 python_single_target_python3_10
 KEYWORDS=~amd64 ~x86
 LICENSE=GPL-3
-RDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) dev-lang/perl sys-libs/zlib
+RDEPEND=python_single_target_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_single_target_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) dev-lang/perl sys-libs/zlib
 REQUIRED_USE=cpu_flags_x86_sse2 ^^ ( python_single_target_python3_9 python_single_target_python3_10 )
 SLOT=2
 SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.4.4/bowtie2-2.4.4-source.zip
-_eclasses_=multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	python-single-r1	75118e916668a74c660a13b0ecb22562	python-utils-r1	8d5c1c4ecef47fa1b4576a718c620d1d	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
+_eclasses_=multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	python-single-r1	75118e916668a74c660a13b0ecb22562	python-utils-r1	429bfd4e8d8e39db5385ba5744f30788	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
 _md5_=7e782380091eb080dc11ed573335cbf2
diff --git a/metadata/md5-cache/sci-biology/pysam-0.19.1 b/metadata/md5-cache/sci-biology/pysam-0.19.1
index 7e42994ace62..d59cfdd6ee0e 100644
--- a/metadata/md5-cache/sci-biology/pysam-0.19.1
+++ b/metadata/md5-cache/sci-biology/pysam-0.19.1
@@ -1,4 +1,4 @@
-BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.1.3[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1:3.11 ) >=dev-python/setuptools-65.5.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
+BDEPEND=test? ( =sci-biology/bcftools-1.15.1* =sci-biology/samtools-1.15.1* ) test? ( =sci-libs/htslib-1.15.1*:= >=dev-python/pytest-7.2.1[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] ) python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 ) >=dev-python/setuptools-65.7.0[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
 DEFINED_PHASES=compile configure install prepare test
 DEPEND==sci-libs/htslib-1.15.1*:= dev-python/cython[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?] dev-python/setuptools[python_targets_python3_9(-)?,python_targets_python3_10(-)?,python_targets_python3_11(-)?]
 DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format
@@ -8,10 +8,10 @@ INHERIT=distutils-r1
 IUSE=test python_targets_python3_9 python_targets_python3_10 python_targets_python3_11
 KEYWORDS=~amd64 ~x86
 LICENSE=MIT
-RDEPEND==sci-libs/htslib-1.15.1*:= python_targets_python3_9? ( >=dev-lang/python-3.9.16:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1:3.11 )
+RDEPEND==sci-libs/htslib-1.15.1*:= python_targets_python3_9? ( >=dev-lang/python-3.9.16-r1:3.9 ) python_targets_python3_10? ( >=dev-lang/python-3.10.9-r1:3.10 ) python_targets_python3_11? ( >=dev-lang/python-3.11.1-r1:3.11 )
 REQUIRED_USE=|| ( python_targets_python3_9 python_targets_python3_10 python_targets_python3_11 )
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://github.com/pysam-developers/pysam/archive/v0.19.1.tar.gz -> pysam-0.19.1.gh.tar.gz
-_eclasses_=distutils-r1	dcd5f48510105eb95e550ab968147365	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	8d5c1c4ecef47fa1b4576a718c620d1d	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
+_eclasses_=distutils-r1	5805686d488d821ed8d8d9367942c0f3	multibuild	bddcb51b74f4a76724ff7cf8e7388869	multilib	5ca4e49abed8e3a2f7b56920eadee157	multiprocessing	b4e253ab22cef7b1085e9b67c7a3b730	ninja-utils	38c85b725d0467e51954ea921b6c104b	out-of-source-utils	1a9007554652a6e627edbccb3c25a439	python-r1	666be58f658d6b32affe30f80e39a49e	python-utils-r1	429bfd4e8d8e39db5385ba5744f30788	toolchain-funcs	9a610728b9bcca1919234cceb35a1027
 _md5_=5bd55873aaed892e71220dbfdc6d68a0