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authorV3n3RiX <venerix@redcorelinux.org>2017-11-16 16:56:41 +0000
committerV3n3RiX <venerix@redcorelinux.org>2017-11-16 16:56:41 +0000
commit38f60b3ec9ff175535d9a056a76ae42931e61e21 (patch)
tree320bc3a66bb967560bbfe8c576a6e75333cf83cc /metadata/md5-cache/sci-biology
parente2d84e38284aeb9d522a7e935554340ddf0e4a6f (diff)
gentoo resync : 16.11.2017
Diffstat (limited to 'metadata/md5-cache/sci-biology')
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-0.9.114
-rw-r--r--metadata/md5-cache/sci-biology/HTSeq-999912
-rw-r--r--metadata/md5-cache/sci-biology/STAR-2.5.3a12
-rw-r--r--metadata/md5-cache/sci-biology/kallisto-0.43.112
-rw-r--r--metadata/md5-cache/sci-biology/kallisto-999910
5 files changed, 60 insertions, 0 deletions
diff --git a/metadata/md5-cache/sci-biology/HTSeq-0.9.1 b/metadata/md5-cache/sci-biology/HTSeq-0.9.1
new file mode 100644
index 000000000000..450e7927f0a1
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/HTSeq-0.9.1
@@ -0,0 +1,14 @@
+DEFINED_PHASES=compile configure install prepare test
+DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] >=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)]
+DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
+EAPI=6
+HOMEPAGE=https://htseq.readthedocs.io/
+IUSE=python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6
+KEYWORDS=~amd64
+LICENSE=GPL-3+
+RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)]
+REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 )
+SLOT=0
+SRC_URI=mirror://pypi/H/HTSeq/HTSeq-0.9.1.tar.gz
+_eclasses_=distutils-r1 372bbe39047c0a2550319a3a82f3e063 multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing 6f5991c7101863d0b29df63990ad852e python-r1 e9350ec46bb5c9f3504b4fbe8b8d8987 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 185a06792159ca143528e7010368e8af xdg-utils f2c8335407f0b935b0a96d4adf23ef25
+_md5_=baebb3e5c138076f90cdaad5bc41573f
diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999
new file mode 100644
index 000000000000..596281d297d4
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/HTSeq-9999
@@ -0,0 +1,12 @@
+DEFINED_PHASES=compile configure install prepare test unpack
+DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] >=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] >=dev-vcs/git-1.8.2.1
+DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files
+EAPI=6
+HOMEPAGE=https://htseq.readthedocs.io/
+IUSE=python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6
+LICENSE=GPL-3+
+RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)]
+REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 )
+SLOT=0
+_eclasses_=distutils-r1 372bbe39047c0a2550319a3a82f3e063 git-r3 52a888802d25387c2c74cb845d1219bc multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing 6f5991c7101863d0b29df63990ad852e python-r1 e9350ec46bb5c9f3504b4fbe8b8d8987 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 185a06792159ca143528e7010368e8af xdg-utils f2c8335407f0b935b0a96d4adf23ef25
+_md5_=baebb3e5c138076f90cdaad5bc41573f
diff --git a/metadata/md5-cache/sci-biology/STAR-2.5.3a b/metadata/md5-cache/sci-biology/STAR-2.5.3a
new file mode 100644
index 000000000000..718b4ff5afcf
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/STAR-2.5.3a
@@ -0,0 +1,12 @@
+DEFINED_PHASES=compile configure install pretend setup
+DEPEND=sci-libs/htslib:= virtual/pkgconfig
+DESCRIPTION=STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays
+EAPI=6
+HOMEPAGE=https://github.com/alexdobin/STAR
+KEYWORDS=~amd64
+LICENSE=GPL-3
+RDEPEND=sci-libs/htslib:=
+SLOT=0
+SRC_URI=https://github.com/alexdobin/STAR/archive/2.5.3a.tar.gz -> STAR-2.5.3a.tar.gz
+_eclasses_=multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs 185a06792159ca143528e7010368e8af
+_md5_=1eb821b9192887ab1f2ac6b1536037ac
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.43.1 b/metadata/md5-cache/sci-biology/kallisto-0.43.1
new file mode 100644
index 000000000000..67da6ffb552f
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/kallisto-0.43.1
@@ -0,0 +1,12 @@
+DEFINED_PHASES=compile configure install prepare test
+DEPEND=sci-libs/hdf5:= sys-libs/zlib:= sys-devel/make >=dev-util/cmake-3.7.2
+DESCRIPTION=Near-optimal RNA-Seq quantification
+EAPI=6
+HOMEPAGE=http://pachterlab.github.io/kallisto/
+KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=BSD
+RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
+SLOT=0
+SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz -> kallisto-0.43.1.tar.gz
+_eclasses_=cmake-utils f9fb12e2dbe2e0c9c17f030bae85eb02 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 227b041a120d309fdefbebb3b8c1dfa9 flag-o-matic 2274fcc1e7ef6affaff5bcd636275417 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing 6f5991c7101863d0b29df63990ad852e ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 toolchain-funcs 185a06792159ca143528e7010368e8af versionator c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=b5fc562bf49e70db44b86bc5702ae9f2
diff --git a/metadata/md5-cache/sci-biology/kallisto-9999 b/metadata/md5-cache/sci-biology/kallisto-9999
new file mode 100644
index 000000000000..499028aee979
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/kallisto-9999
@@ -0,0 +1,10 @@
+DEFINED_PHASES=compile configure install prepare test unpack
+DEPEND=sci-libs/hdf5:= sys-libs/zlib:= sys-devel/make >=dev-util/cmake-3.7.2 >=dev-vcs/git-1.8.2.1
+DESCRIPTION=Near-optimal RNA-Seq quantification
+EAPI=6
+HOMEPAGE=http://pachterlab.github.io/kallisto/
+LICENSE=BSD
+RDEPEND=sci-libs/hdf5:= sys-libs/zlib:=
+SLOT=0
+_eclasses_=cmake-utils f9fb12e2dbe2e0c9c17f030bae85eb02 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 227b041a120d309fdefbebb3b8c1dfa9 flag-o-matic 2274fcc1e7ef6affaff5bcd636275417 git-r3 52a888802d25387c2c74cb845d1219bc ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing 6f5991c7101863d0b29df63990ad852e ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 toolchain-funcs 185a06792159ca143528e7010368e8af versionator c80ccf29e90adea7c5cae94b42eb76d0
+_md5_=b5fc562bf49e70db44b86bc5702ae9f2
generated by cgit v1.2.3 (git 2.25.1) at 2024-07-16 04:41:09 +0000