gentoo resync : 25.12.2017

17 files changed, 33 insertions, 94 deletions

diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz
index 2a4973b2386c..7e3fcaf5c31e 100644
--- a/metadata/md5-cache/sci-biology/Manifest.gz
+++ b/metadata/md5-cache/sci-biology/Manifest.gz
diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
index 548d5f3f8918..a27acb974aba 100644
--- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2
+++ b/metadata/md5-cache/sci-biology/allpathslg-52488-r2
@@ -9,4 +9,4 @@ RDEPEND=!sci-biology/allpaths !sci-biology/vaal
 SLOT=0
 SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz https://dev.gentoo.org/~mgorny/dist/allpathslg-52488-patchset.tar.bz2
 _eclasses_=autotools	dc412f38566b91012efd58b9c203e6c3	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	libtool	0081a71a261724730ec4c248494f044d	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=bd338637b4cab8bfc320aeaffcb5297e
+_md5_=8c8bda5ab2704db1e969660ebe5882c1
diff --git a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1 b/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1
index 3a576daf96db..f7b42f930ec5 100644
--- a/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1
+++ b/metadata/md5-cache/sci-biology/bioruby-1.4.3.0001-r1
@@ -10,5 +10,5 @@ RDEPEND=ruby_targets_ruby22? ( dev-ruby/libxml[ruby_targets_ruby22] ) ruby_targe
 REQUIRED_USE=|| ( ruby_targets_ruby22 )
 SLOT=0
 SRC_URI=http://bioruby.org/archive/bioruby-1.4.3.0001.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	ruby-fakegem	cf1343b57e8029745950b4b147ff4d3a	ruby-ng	1a95cd8be181598c8171cf918aa225d9	ruby-utils	f8a0644cb27ba724df27b2a20a739b53	toolchain-funcs	185a06792159ca143528e7010368e8af	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	ruby-fakegem	cf1343b57e8029745950b4b147ff4d3a	ruby-ng	2da44d50080e3d54e1a4ac7d91d149f8	ruby-utils	14d8fbcb71d2bf9dcb208b776491bee2	toolchain-funcs	185a06792159ca143528e7010368e8af	versionator	c80ccf29e90adea7c5cae94b42eb76d0
 _md5_=0bff0c3e2db3a9967274e417280ca082
diff --git a/metadata/md5-cache/sci-biology/bioruby-1.5.1 b/metadata/md5-cache/sci-biology/bioruby-1.5.1
index 0af4772950b8..308e7a59bf5a 100644
--- a/metadata/md5-cache/sci-biology/bioruby-1.5.1
+++ b/metadata/md5-cache/sci-biology/bioruby-1.5.1
@@ -10,5 +10,5 @@ RDEPEND=ruby_targets_ruby22? ( dev-ruby/libxml[ruby_targets_ruby22] ) ruby_targe
 REQUIRED_USE=|| ( ruby_targets_ruby22 ruby_targets_ruby23 )
 SLOT=0
 SRC_URI=mirror://rubygems/bio-1.5.1.gem
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	ruby-fakegem	cf1343b57e8029745950b4b147ff4d3a	ruby-ng	1a95cd8be181598c8171cf918aa225d9	ruby-utils	f8a0644cb27ba724df27b2a20a739b53	toolchain-funcs	185a06792159ca143528e7010368e8af	versionator	c80ccf29e90adea7c5cae94b42eb76d0
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	java-utils-2	1971a6927fcd7ec839f7e12b28a24bdd	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	ruby-fakegem	cf1343b57e8029745950b4b147ff4d3a	ruby-ng	2da44d50080e3d54e1a4ac7d91d149f8	ruby-utils	14d8fbcb71d2bf9dcb208b776491bee2	toolchain-funcs	185a06792159ca143528e7010368e8af	versionator	c80ccf29e90adea7c5cae94b42eb76d0
 _md5_=279e084b7a2a210af63381996d8b6488
diff --git a/metadata/md5-cache/sci-biology/bowtie-1.1.2 b/metadata/md5-cache/sci-biology/bowtie-1.1.2
deleted file mode 100644
index 4605d4c62a96..000000000000
--- a/metadata/md5-cache/sci-biology/bowtie-1.1.2
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DEPEND=app-arch/unzip tbb? ( dev-cpp/tbb )
-DESCRIPTION=Popular short read aligner for Next-generation sequencing data
-EAPI=5
-HOMEPAGE=http://bowtie-bio.sourceforge.net/
-IUSE=examples +tbb
-KEYWORDS=amd64 x86 ~x64-macos
-LICENSE=Artistic
-SLOT=1
-SRC_URI=mirror://sourceforge/bowtie-bio/bowtie-1.1.2-src.zip
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=d123eea345ef4aa6c2c174df53575eeb
diff --git a/metadata/md5-cache/sci-biology/bowtie-2.2.6 b/metadata/md5-cache/sci-biology/bowtie-2.2.6
deleted file mode 100644
index 7d24aa8908b2..000000000000
--- a/metadata/md5-cache/sci-biology/bowtie-2.2.6
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile install pretend
-DEPEND=dev-lang/perl app-arch/unzip tbb? ( dev-cpp/tbb )
-DESCRIPTION=Popular short read aligner for Next-generation sequencing data
-EAPI=5
-HOMEPAGE=http://bowtie-bio.sourceforge.net/bowtie2/
-IUSE=examples cpu_flags_x86_sse2 +tbb
-KEYWORDS=amd64 x86
-LICENSE=GPL-3
-RDEPEND=dev-lang/perl
-SLOT=2
-SRC_URI=mirror://sourceforge/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-source.zip
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=9a4ea0d94d151da708192284a1117dd7
diff --git a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2
index 4c1f2bd55512..4f39753a4636 100644
--- a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2
+++ b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2
@@ -11,4 +11,4 @@ REQUIRED_USE=python_targets_python2_7
 SLOT=0
 SRC_URI=http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz
 _eclasses_=autotools	dc412f38566b91012efd58b9c203e6c3	desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	libtool	0081a71a261724730ec4c248494f044d	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	python-single-r1	317a2557b4d7319a7418225f65accf77	python-utils-r1	c9de01becf9df3f8c10aeec3dc693f5d	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=183887a425454e50269f2be3e9af5b7e
+_md5_=816b8cb2b88b4938d0bf5ea1db34170b
diff --git a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1 b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1
deleted file mode 100644
index 88b57765b200..000000000000
--- a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r1
+++ /dev/null
@@ -1,10 +0,0 @@
-DEFINED_PHASES=compile install postinst prepare
-DESCRIPTION=Greedy and progressive approaches for segment-based multiple sequence alignment
-EAPI=5
-HOMEPAGE=http://dialign-tx.gobics.de/
-KEYWORDS=amd64 x86
-LICENSE=LGPL-2.1
-SLOT=0
-SRC_URI=http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=aadd3cbbb875bbc0d53d08117691ad8e
diff --git a/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2 b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2
new file mode 100644
index 000000000000..e59809d6fc76
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/dialign-tx-1.0.2-r2
@@ -0,0 +1,10 @@
+DEFINED_PHASES=compile configure install postinst
+DESCRIPTION=Greedy and progressive approaches for segment-based multiple sequence alignment
+EAPI=6
+HOMEPAGE=http://dialign-tx.gobics.de/
+KEYWORDS=~amd64 ~x86
+LICENSE=LGPL-2.1
+SLOT=0
+SRC_URI=http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz
+_eclasses_=multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
+_md5_=b04d9beffea802bb82f896df101ca660
diff --git a/metadata/md5-cache/sci-biology/dialign2-2.2.1 b/metadata/md5-cache/sci-biology/dialign2-2.2.1
index e83238c60dbb..a3f73a4049e2 100644
--- a/metadata/md5-cache/sci-biology/dialign2-2.2.1
+++ b/metadata/md5-cache/sci-biology/dialign2-2.2.1
@@ -1,10 +1,10 @@
-DEFINED_PHASES=compile install
+DEFINED_PHASES=compile configure install
 DESCRIPTION=Multiple sequence alignment
-EAPI=5
+EAPI=6
 HOMEPAGE=http://bibiserv.techfak.uni-bielefeld.de/dialign
 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=LGPL-2.1
 SLOT=0
 SRC_URI=http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz
-_eclasses_=multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=97419777f320b8d18d7fe0c86a34d414
+_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
+_md5_=3761a69a47f38308f54ae0b051361ed6
diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30
index 740d1d25c1f7..f1a169eb6852 100644
--- a/metadata/md5-cache/sci-biology/mosaik-2.2.30
+++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30
@@ -7,4 +7,4 @@ LICENSE=GPL-2
 SLOT=0
 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz
 _eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af	vcs-snapshot	03289f51c769cf409d200d2d628cdd6e
-_md5_=e8bd620c581af022566733e65d479626
+_md5_=630686b35f8a549c580c5fd0e2cb02fc
diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.5 b/metadata/md5-cache/sci-biology/primer3-2.3.5
deleted file mode 100644
index 211c41025a61..000000000000
--- a/metadata/md5-cache/sci-biology/primer3-2.3.5
+++ /dev/null
@@ -1,11 +0,0 @@
-DEFINED_PHASES=compile install prepare test
-DEPEND=dev-lang/perl
-DESCRIPTION=Primer Design for PCR reactions
-EAPI=5
-HOMEPAGE=http://primer3.sourceforge.net/
-KEYWORDS=amd64 ppc ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris
-LICENSE=GPL-2
-SLOT=0
-SRC_URI=mirror://sourceforge/primer3/2.3.5/primer3-2.3.5.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=b7f3f26331b5241399cbf40ac9eeeabc
diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.6 b/metadata/md5-cache/sci-biology/primer3-2.3.6
deleted file mode 100644
index fdb7ae8802e1..000000000000
--- a/metadata/md5-cache/sci-biology/primer3-2.3.6
+++ /dev/null
@@ -1,11 +0,0 @@
-DEFINED_PHASES=compile install prepare test
-DEPEND=dev-lang/perl
-DESCRIPTION=Primer Design for PCR reactions
-EAPI=5
-HOMEPAGE=http://primer3.sourceforge.net/
-KEYWORDS=amd64 ppc ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris
-LICENSE=GPL-2
-SLOT=0
-SRC_URI=mirror://sourceforge/primer3/2.3.6/primer3-src-2.3.6.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=e95de8dec7345b06ff7fac5c6c009d53
diff --git a/metadata/md5-cache/sci-biology/primer3-2.3.7 b/metadata/md5-cache/sci-biology/primer3-2.3.7
index b6562f426d88..a99bcc5e566d 100644
--- a/metadata/md5-cache/sci-biology/primer3-2.3.7
+++ b/metadata/md5-cache/sci-biology/primer3-2.3.7
@@ -1,4 +1,4 @@
-DEFINED_PHASES=compile install prepare test
+DEFINED_PHASES=compile configure install prepare test
 DEPEND=dev-lang/perl
 DESCRIPTION=Primer Design for PCR reactions
 EAPI=6
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~spar
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=mirror://sourceforge/project/primer3/primer3/2.3.7/primer3-2.3.7.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=8b3d4a5940e96102e289acad426724d9
+_eclasses_=multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
+_md5_=e79ee4774138e651c83467c2b2cb2926
diff --git a/metadata/md5-cache/sci-biology/t-coffee-11.00-r1 b/metadata/md5-cache/sci-biology/t-coffee-11.00-r1
deleted file mode 100644
index 34d0566aaa08..000000000000
--- a/metadata/md5-cache/sci-biology/t-coffee-11.00-r1
+++ /dev/null
@@ -1,12 +0,0 @@
-DEFINED_PHASES=compile install prepare
-DESCRIPTION=A multiple sequence alignment package
-EAPI=5
-HOMEPAGE=http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html
-IUSE=examples
-KEYWORDS=~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux
-LICENSE=GPL-2
-RDEPEND=sci-biology/clustalw sci-chemistry/tm-align
-SLOT=0
-SRC_URI=http://www.tcoffee.org/Packages/Stable/Version_11.00.8cbe486/T-COFFEE_distribution_Version_11.00.8cbe486.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
-_md5_=a1771c6229fc2548e173d5592657c1b5
diff --git a/metadata/md5-cache/sci-biology/t-coffee-11.00-r2 b/metadata/md5-cache/sci-biology/t-coffee-11.00-r2
new file mode 100644
index 000000000000..afb98a03c6b8
--- /dev/null
+++ b/metadata/md5-cache/sci-biology/t-coffee-11.00-r2
@@ -0,0 +1,11 @@
+DEFINED_PHASES=compile install prepare
+DESCRIPTION=A multiple sequence alignment package
+EAPI=6
+HOMEPAGE=http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html
+KEYWORDS=~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux
+LICENSE=GPL-2
+RDEPEND=sci-biology/clustalw sci-chemistry/tm-align
+SLOT=0
+SRC_URI=http://www.tcoffee.org/Packages/Beta/Latest/T-COFFEE_distribution_Version_11.00.4466924.tar.gz
+_eclasses_=multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af
+_md5_=5c54b109c5b8bef93adbc5f99ddd7114
diff --git a/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1 b/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1
deleted file mode 100644
index 6420b266a874..000000000000
--- a/metadata/md5-cache/sci-biology/t-coffee-9.03.1318-r1
+++ /dev/null
@@ -1,13 +0,0 @@
-DEFINED_PHASES=compile install prepare setup
-DEPEND=virtual/fortran
-DESCRIPTION=A multiple sequence alignment package
-EAPI=5
-HOMEPAGE=http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html
-IUSE=examples
-KEYWORDS=amd64 ppc ~ppc64 x86 ~amd64-linux ~x86-linux
-LICENSE=GPL-2
-RDEPEND=sci-biology/clustalw sci-chemistry/tm-align virtual/fortran
-SLOT=0
-SRC_URI=http://www.tcoffee.org/Packages/Stable/Version_9.03.r1318/T-COFFEE_distribution_Version_9.03.r1318.tar.gz
-_eclasses_=desktop	2ccd1dd1dd7bfb8795eea024a4f91bb6	epatch	8233751dc5105a6ae8fcd86ce2bb0247	estack	43ddf5aaffa7a8d0482df54d25a66a1f	eutils	97ce9decef1ff4b6c5be700283f67343	flag-o-matic	02908f00f002f0f07c5b74783d778325	fortran-2	9e7f20c99213f0627ff7f873d4aaa25d	ltprune	2770eed66a9b8ef944714cd0e968182e	multilib	97f470f374f2e94ccab04a2fb21d811e	toolchain-funcs	185a06792159ca143528e7010368e8af	versionator	c80ccf29e90adea7c5cae94b42eb76d0
-_md5_=369169186d5a67fbb6f2de9ebbc8fd6e