gentoo resync : 14.07.2018

4 files changed, 0 insertions, 213 deletions

diff --git a/dev-python/spectral-cube/Manifest b/dev-python/spectral-cube/Manifest
deleted file mode 100644
index e8332a9010b4..000000000000
--- a/dev-python/spectral-cube/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-AUX spectral-cube-0.4.0-looseversion.patch 6250 BLAKE2B 8ac525adbe36563ca793f2d628977551387271e129905523506e1eb126ce288a936fc14da615c388e2ee0ed632499e056fae81bc53c6524977c97d06b6df7cea SHA512 caaec6f1e405e6986a148495be716e120ac8a6abb0738d7f1906efde4d4097966b10fce73dd8b538b3ea616a5245ffb1b876c1a16ad85e2362206b7d0d52ffdb
-DIST spectral-cube-0.4.0.tar.gz 290453 BLAKE2B 3e41ca0e6d925e36269c638aabc9e4df70ac8abf9ac2a59c4425435bbcb2d0b9b1ec1140e47828d597665a0164dc7c0b88d929762ca5c7bf72b5b16aa31f97d1 SHA512 20970d1be0d836bd07ea96ee909300f28eaf2ab4ded7b4525eb68399d242b864fe93120a16ef2ef35eba5f547c0cbe90b07c27ef44ab1910dbbe97230fbab84e
-EBUILD spectral-cube-0.4.0.ebuild 1224 BLAKE2B f62c8c3887f33e290e81f0541c6bcafdf3672aa1c1c2a51fc2fa5967f24677cc2d7fd7c1e265eb0ea501ed5cb3ef0a5076272017abfca3c284b84f59ca78d054 SHA512 6018fe52f2e7f570da8326420ae1a83d1fa9c65ae9104bcfa96a7bbda1af4de6fcf4103ab1cf520f7d34ae8cea87c27148c92670dd436876db426c894fe58e55
-MISC metadata.xml 773 BLAKE2B ed1f11a1efd762bc880b9d10d40780c8876c6d6a2216ad0617d9219db1fa9e56b2ea1aa05a653fd613715703f12320df349fdd1ed2b1331972ca6c7773a9b717 SHA512 407cdc09e494af2429bf809dc946bc7e05c300e9e4cbad68e75021628f2cfc187561c3a183081cf13cb7b892631d2bceebd5ae0a0109957a1936ec64ea4f6d4f
diff --git a/dev-python/spectral-cube/files/spectral-cube-0.4.0-looseversion.patch b/dev-python/spectral-cube/files/spectral-cube-0.4.0-looseversion.patch
deleted file mode 100644
index 42147de559a5..000000000000
--- a/dev-python/spectral-cube/files/spectral-cube-0.4.0-looseversion.patch
+++ /dev/null
@@ -1,139 +0,0 @@
-From: Ole Streicher <olebole@debian.org>
-Date: Tue, 12 Jul 2016 08:54:59 +0200
-Subject: Use LooseVersion instead of StrictVersion.
-
-StrictVersion fails on numpy RCs. LooseVersion is a compromise until something better is available.
----
- spectral_cube/np_compat.py                |  4 ++--
- spectral_cube/spectral_cube.py            |  4 ++--
- spectral_cube/tests/test_masks.py         |  4 ++--
- spectral_cube/tests/test_moments.py       |  4 ++--
- spectral_cube/tests/test_spectral_cube.py | 10 +++++-----
- 5 files changed, 13 insertions(+), 13 deletions(-)
-
-diff --git a/spectral_cube/np_compat.py b/spectral_cube/np_compat.py
-index e72b4d9..dd9080a 100644
---- a/spectral_cube/np_compat.py
-+++ b/spectral_cube/np_compat.py
-@@ -1,7 +1,7 @@
- from __future__ import print_function, absolute_import, division
- 
- import numpy as np
--from distutils.version import StrictVersion
-+from distutils.version import LooseVersion
- 
- def allbadtonan(function):
-     """
-@@ -11,7 +11,7 @@ def allbadtonan(function):
-     """
-     def f(data, axis=None):
-         result = function(data, axis=axis)
--        if StrictVersion(np.__version__) >= StrictVersion('1.9.0'):
-+        if LooseVersion(np.__version__) >= LooseVersion('1.9.0'):
-             if axis is None:
-                 if np.all(np.isnan(data)):
-                     return np.nan
-diff --git a/spectral_cube/spectral_cube.py b/spectral_cube/spectral_cube.py
-index 231245d..fa61119 100644
---- a/spectral_cube/spectral_cube.py
-+++ b/spectral_cube/spectral_cube.py
-@@ -34,7 +34,7 @@ from .lower_dimensional_structures import (Projection, Slice, OneDSpectrum,
-                                            LowerDimensionalObject)
- from .base_class import BaseNDClass, SpectralAxisMixinClass, DOPPLER_CONVENTIONS
- 
--from distutils.version import StrictVersion
-+from distutils.version import LooseVersion
- 
- __all__ = ['SpectralCube', 'VaryingResolutionSpectralCube']
- 
-@@ -2072,7 +2072,7 @@ class BaseSpectralCube(BaseNDClass, SpectralAxisMixinClass):
-         import yt
- 
-         if ('dev' in yt.__version__ or
--            StrictVersion(yt.__version__) >= StrictVersion('3.0')):
-+            LooseVersion(yt.__version__) >= LooseVersion('3.0')):
- 
-             from yt.frontends.fits.api import FITSDataset
-             from yt.units.unit_object import UnitParseError
-diff --git a/spectral_cube/tests/test_masks.py b/spectral_cube/tests/test_masks.py
-index 9116cb3..42a2125 100644
---- a/spectral_cube/tests/test_masks.py
-+++ b/spectral_cube/tests/test_masks.py
-@@ -14,7 +14,7 @@ from .. import (BooleanArrayMask, SpectralCube, LazyMask, LazyComparisonMask,
-                 FunctionMask, CompositeMask)
- from ..masks import is_broadcastable_and_smaller, dims_to_skip, view_of_subset
- 
--from distutils.version import StrictVersion
-+from distutils.version import LooseVersion
- 
- 
- def test_spectral_cube_mask():
-@@ -370,7 +370,7 @@ def test_flat_mask():
-     assert np.all(cube.sum(axis=0)[mask_array] == mcube.sum(axis=0)[mask_array])
-     assert np.all(np.isnan(mcube.sum(axis=0)[~mask_array]))
- 
--@pytest.mark.skipif(StrictVersion(np.__version__) < StrictVersion('1.7'),
-+@pytest.mark.skipif(LooseVersion(np.__version__) < LooseVersion('1.7'),
-                     reason='Numpy <1.7 does not support multi-slice indexing.')
- def test_flat_mask_spectral():
-     cube, data = cube_and_raw('adv.fits')
-diff --git a/spectral_cube/tests/test_moments.py b/spectral_cube/tests/test_moments.py
-index 9b118fd..82eff40 100644
---- a/spectral_cube/tests/test_moments.py
-+++ b/spectral_cube/tests/test_moments.py
-@@ -1,7 +1,7 @@
- from __future__ import print_function, absolute_import, division
- 
- import warnings
--from distutils.version import StrictVersion
-+from distutils.version import LooseVersion
- 
- import pytest
- import numpy as np
-@@ -78,7 +78,7 @@ axis_order = pytest.mark.parametrize(('axis', 'order'),
-                                      (1, 0), (1, 1), (1, 2),
-                                      (2, 0), (2, 1), (2, 2)))
- 
--if StrictVersion(astropy.__version__[:3]) >= StrictVersion('1.0'):
-+if LooseVersion(astropy.__version__[:3]) >= LooseVersion('1.0'):
-     # The relative error is slightly larger on astropy-dev
-     # There is no obvious reason for this.
-     rtol = 2e-7
-diff --git a/spectral_cube/tests/test_spectral_cube.py b/spectral_cube/tests/test_spectral_cube.py
-index 025e6bd..4dce3bb 100644
---- a/spectral_cube/tests/test_spectral_cube.py
-+++ b/spectral_cube/tests/test_spectral_cube.py
-@@ -4,7 +4,7 @@ import operator
- import itertools
- import warnings
- import mmap
--from distutils.version import StrictVersion, LooseVersion
-+from distutils.version import LooseVersion, LooseVersion
- 
- # needed to test for warnings later
- warnings.simplefilter('always', UserWarning)
-@@ -468,12 +468,12 @@ class TestNumpyMethods(BaseTest):
-         scmed = self.c.apply_numpy_function(np.median, axis=0)
-         # this checks whether numpy <=1.9.3 has a bug?
-         # as far as I can tell, np==1.9.3 no longer has this bug/feature
--        #if StrictVersion(np.__version__) <= StrictVersion('1.9.3'):
-+        #if LooseVersion(np.__version__) <= LooseVersion('1.9.3'):
-         #    # print statements added so we get more info in the travis builds
--        #    print("Numpy version is: {0}".format(StrictVersion(np.__version__)))
-+        #    print("Numpy version is: {0}".format(LooseVersion(np.__version__)))
-         #    assert np.count_nonzero(np.isnan(scmed)) == 5
-         #else:
--        #    print("Numpy version is: {0}".format(StrictVersion(np.__version__)))
-+        #    print("Numpy version is: {0}".format(LooseVersion(np.__version__)))
-         assert np.count_nonzero(np.isnan(scmed)) == 6
- 
-         scmed = self.c.apply_numpy_function(np.nanmedian, axis=0)
-@@ -667,7 +667,7 @@ def test_read_write_rountrip(tmpdir):
-     assert cube.shape == cube.shape
-     assert_allclose(cube._data, cube2._data)
-     if (((hasattr(_wcs, '__version__')
--          and StrictVersion(_wcs.__version__) < StrictVersion('5.9'))
-+          and LooseVersion(_wcs.__version__) < LooseVersion('5.9'))
-          or not hasattr(_wcs, '__version__'))):
-         # see https://github.com/astropy/astropy/pull/3992 for reasons:
-         # we should upgrade this for 5.10 when the absolute accuracy is
diff --git a/dev-python/spectral-cube/metadata.xml b/dev-python/spectral-cube/metadata.xml
deleted file mode 100644
index 0cc45ca202a5..000000000000
--- a/dev-python/spectral-cube/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-astronomy@gentoo.org</email>
-    <name>Gentoo Astronomy Project</name>
-  </maintainer>
-  <longdescription lang="en">
-    The spectral-cube astronomy python module provides an easy way to
-    read, manipulate, analyze, and write data cubes with two
-    positional dimensions and one spectral dimension, optionally with
-    Stokes parameters. It aims to be a versatile data container for
-    building custom analysis routines.
-  </longdescription>
-  <upstream>
-    <remote-id type="pypi">spectral-cube</remote-id>
-    <remote-id type="github">astropy/spectral-cube</remote-id>
-  </upstream>
-</pkgmetadata>
diff --git a/dev-python/spectral-cube/spectral-cube-0.4.0.ebuild b/dev-python/spectral-cube/spectral-cube-0.4.0.ebuild
deleted file mode 100644
index 0b0359cc65db..000000000000
--- a/dev-python/spectral-cube/spectral-cube-0.4.0.ebuild
+++ /dev/null
@@ -1,51 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
-inherit distutils-r1
-
-DESCRIPTION="Manipulate astronomical data cubes with Python"
-HOMEPAGE="https://spectral-cube.readthedocs.org/"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-LICENSE="BSD"
-SLOT="0"
-IUSE="doc test"
-
-RDEPEND="dev-python/astropy[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}
-	dev-python/astropy-helpers[${PYTHON_USEDEP}]
-	dev-python/setuptools[${PYTHON_USEDEP}]
-	doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-	test? ( dev-python/pytest[${PYTHON_USEDEP}] )"
-
-PATCHES=( "${FILESDIR}"/${P}-looseversion.patch )
-
-python_prepare_all() {
-	sed -i -e '/auto_use/s/True/False/' setup.cfg || die
-	distutils-r1_python_prepare_all
-}
-
-python_compile_all() {
-	if use doc; then
-		python_setup
-		PYTHONPATH="${BUILD_DIR}"/lib \
-				  esetup.py build_sphinx --no-intersphinx
-	fi
-}
-
-python_test() {
-	pushd spectral_cube/tests/data > /dev/null
-	"${PYTHON}" make_test_cubes.py
-	popd > /dev/null
-	esetup.py test
-}
-
-python_install_all() {
-	use doc && local HTML_DOCS=( docs/_build/html/ )
-	distutils-r1_python_install_all
-}