gentoo resync : 12.01.2019

4 files changed, 230 insertions, 3 deletions

diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest
index 87b87ad13a6a..2a72cb4f7fc1 100644
--- a/dev-python/numpy/Manifest
+++ b/dev-python/numpy/Manifest
@@ -2,32 +2,38 @@ AUX numpy-1.10.2-no-hardcode-blas.patch 3295 BLAKE2B 300b64a2867cb55fef23aff5806
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 AUX numpy-1.14.5-py37.patch 5417 BLAKE2B a6660b06a6f5ebc436b8bef4f53934892384889304f3b48ed1e9e84298deb78528e431e2102856fe1bc44b5e9a472b3a0b51401ad824b7072465d8c54f6aa939 SHA512 78b6a1640cf51e9b58478fd9ad5044bec2efc1319cc050f0a1345fc367b57b9170954ce25b88b2851007b438a00ac380eab48f6b699fed1115d109972ec553ad
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 DIST numpy-user-1.14.5.pdf 574418 BLAKE2B 80738f1760932fa74b07334d1a355ba3ce319e0b03fe1428d0b3497466fa1164ccbad84969cb7bc8daebb5525094f0d0c7710e1d661b1c6bbaca0669bfcbf875 SHA512 fb00305408c56ee203ed71ac042474592e7e933f14a639f6dce0f6dc80206c13b844c2425a919f9072a114c7af2c2f9f85b78a07ba3874259e5d173290e51a13
+DIST numpy-user-1.15.4.pdf 596191 BLAKE2B 1387b7aac9cccba4b7ce259391f56372959db35c4ddce111afb9949347ebcf3290e7d3fb5b1b2d2e7850911259cddb07edfe104c1396ae8e31a58a81e9293f16 SHA512 2089753b48412f094b279c378be1d221ec9b171957171a4e26b4589d594e00b4f66b6f8a88a7eb665e8c3fa3e6ed505d63da80d4d01ced041544b97ea56fe212
 DIST numpy-user-1.8.1.pdf 408305 BLAKE2B 2956e42ebad45b021f72c7e71d357d953ea8a26639b4c6e81dbe1718052304ac5ce1a7f96646d94ad48bf737ddc6962fcbc304e31dfce32b85cb8165b0ada6e0 SHA512 9e646e89e7e67834fa596e43082b43842d1c59287d22fd8d20c9f0a1d3d56a518a08cc2c036de4972ad0d6d9d3c2f56e2210f76e7244d3f7547b5204d84d3c7c
 DIST numpy-user-1.9.1.pdf 418111 BLAKE2B 683ed35ca9e123387a08a88047ad0cfd8bf3698efee7c17c3b57941f57f86297798787f13b142a1bf806f775e70bc116109decb281ab82959c08932c06aa1f3d SHA512 724302468a8e93daf70d379bb1ee7369953e297c40ea260f080b7aca3c9c81e619a81705bdfb2ea214da5b5325ec2b48e953eceeaa1d60c07593b00c35989f45
 EBUILD numpy-1.10.4.ebuild 4094 BLAKE2B a20c04c9445b3b13d30706b2fa26633541722175c4f2797777cd90c5c5d1a7af5079009bbdee026b0b437e6e82ece7efa60f16d59a09e7c39b2139162c76bd86 SHA512 f0817e879689c05b76cfb921db376828227f947fec740126e59969bf75933d5b0bd969f5dd836c7060a4bcf079ab7174db33e0388629d8f323585d7e31ce9d18
 EBUILD numpy-1.13.3.ebuild 4646 BLAKE2B 717d5acd1683ef3f5d7ea07475b7d3a5555991aa2240c5cade1170f01092e12e315ba99d408f2f04e8e998d5c0820bbc2034ef177375d729d19280e6940c6f66 SHA512 2eccdcda9e51aeda860a1cc02538708709687a202a8d0ed9cba6ab6fa45ce80153b118bda265944235040027d7b15f36c281d130e2e6a59a66d9ecec046240b8
 EBUILD numpy-1.14.5.ebuild 4065 BLAKE2B 42f9c13392d122e0aa3fa01d2a55d370b4d37a1f932cb860b1f9d81c551632f3778a4ab94fa911f7a9db6a9686d1541d54f450cd9e78fc9168b2cb00bf9c15a2 SHA512 915326a6ccbf196e98e3061a4abc8817246cd6b46cdeaafb7d93dc577358da626334563398def155de38fd090a75c3c9e4b45753c231851ffe6774755e5e74d5
+EBUILD numpy-1.15.4.ebuild 3870 BLAKE2B 037ed926b7d3c12a494c7f18fdc2ac4d58ddee86419b29b189ec3009d418bc3bf821b78e4cfe55edda602b804d0b6516acb7e81961a530466d4ab327f77b19da SHA512 19ecefb564f0e6b787d37f591f373800eb30328e90740c8c29964f8d0331fa8cbfcab8c0fca427a2dbb5beb239eba21e3955c7830e633760ad97fd829d72eecb
 EBUILD numpy-1.8.2.ebuild 3945 BLAKE2B dd27488a9771219b8df7c8546067ec710168d39a7675c963846197aac6959907d402269efdee44d9e2a42edcfe6a3f27e9e360604df77d620f8f39f96427201e SHA512 3086b989bd9ac6f8b07839afaabcd8f683888ac5f0b2e1fdeb951ac49c79af4585be7984775af8d3a03b89957792ffeb065b54c624d00050bb389aac67f0fed6
 EBUILD numpy-1.9.2.ebuild 3958 BLAKE2B e05e749e5f0c4b3f0346cf0dc78531421ab081bcea12ecef30219d0504a77c0f99ccacfaf355bbf008c2af07434d7989e4b2c4417e91ad48e70407535a23a1be SHA512 04f442c6a363caad3313418f681e264a7e680c19d235aa132b27f2d0caac8495bcda7c75ea9904ad0096e844beda1ccb15dd2f4562e632a1576918279569cfe4
-EBUILD numpy-9999.ebuild 3355 BLAKE2B 09f61bae65c20b5736f5375c2ce6c04670f43f953b820ce30c329c8053f1b151490c53d00209fb84b2167ff11d3b2901dcbf5780ea1d057787f0218f8a9a322e SHA512 9ec2ffc43301df0664b7448ea3d094c8fa6fd587c087c95e0ad91f9cda780ff605653ff6e003234d8e4091ed30973ba13265dab882d1f4e854090958c2ff35ba
+EBUILD numpy-9999.ebuild 3340 BLAKE2B b0a52f63d54bc0cfb926dc42a64d08fe36112a7080f84a37dbb08d8723bfb84c9cf6d676fe9d440a0f22fe1fef25ef43cfe5dedca8d214a6fb81425485cba06a SHA512 4175996a62f791e1893d5e56b469c4db365f613b051a0bb08be679cb26515a96364e0a4922631db4417eda7137d218e169563aa23f5d575983f6a9e08a5d032a
 MISC metadata.xml 876 BLAKE2B 5e257d6ea3c59c5819d854db7b7db3ebff53b5c87b5ce9348786085f09db12aa6fc8fa86393b9e6c06760ac0d9f36a52fdfb1865c9d1d9ad5526d74d3d53e8b1 SHA512 d35d0954ff8f21e370edeab3ce3e5ab501bf216c93399e807ede6f1910ba0ea41359425bf894d813a39442fb92a724fe83ec8a5c64e6bd97de9422f67700d549
diff --git a/dev-python/numpy/files/numpy-1.15.4-no-hardcode-blas.patch b/dev-python/numpy/files/numpy-1.15.4-no-hardcode-blas.patch
new file mode 100644
index 000000000000..979b56bd6dc5
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.15.4-no-hardcode-blas.patch
@@ -0,0 +1,76 @@
+diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py
+index 65d7de316..a85640d30 100644
+--- a/numpy/distutils/system_info.py
++++ b/numpy/distutils/system_info.py
+@@ -364,29 +364,7 @@ def get_info(name, notfound_action=0):
+       1 - display warning message
+       2 - raise error
+     """
+-    cl = {'atlas': atlas_info,  # use lapack_opt or blas_opt instead
+-          'atlas_threads': atlas_threads_info,                # ditto
+-          'atlas_blas': atlas_blas_info,
+-          'atlas_blas_threads': atlas_blas_threads_info,
+-          'lapack_atlas': lapack_atlas_info,  # use lapack_opt instead
+-          'lapack_atlas_threads': lapack_atlas_threads_info,  # ditto
+-          'atlas_3_10': atlas_3_10_info,  # use lapack_opt or blas_opt instead
+-          'atlas_3_10_threads': atlas_3_10_threads_info,                # ditto
+-          'atlas_3_10_blas': atlas_3_10_blas_info,
+-          'atlas_3_10_blas_threads': atlas_3_10_blas_threads_info,
+-          'lapack_atlas_3_10': lapack_atlas_3_10_info,  # use lapack_opt instead
+-          'lapack_atlas_3_10_threads': lapack_atlas_3_10_threads_info,  # ditto
+-          'mkl': mkl_info,
+-          # openblas which may or may not have embedded lapack
+-          'openblas': openblas_info,          # use blas_opt instead
+-          # openblas with embedded lapack
+-          'openblas_lapack': openblas_lapack_info, # use blas_opt instead
+-          'openblas_clapack': openblas_clapack_info, # use blas_opt instead
+-          'blis': blis_info,                  # use blas_opt instead
+-          'lapack_mkl': lapack_mkl_info,      # use lapack_opt instead
+-          'blas_mkl': blas_mkl_info,          # use blas_opt instead
+-          'accelerate': accelerate_info,      # use blas_opt instead
+-          'x11': x11_info,
++    cl = {'x11': x11_info,
+           'fft_opt': fft_opt_info,
+           'fftw': fftw_info,
+           'fftw2': fftw2_info,
+@@ -731,10 +709,7 @@ class system_info(object):
+         return [b for b in [a.strip() for a in libs.split(',')] if b]
+ 
+     def get_libraries(self, key='libraries'):
+-        if hasattr(self, '_lib_names'):
+-            return self.get_libs(key, default=self._lib_names)
+-        else:
+-            return self.get_libs(key, '')
++        return self.get_libs(key, '')
+ 
+     def library_extensions(self):
+         c = customized_ccompiler()
+@@ -1685,7 +1660,7 @@ class blas_info(system_info):
+             lib = self.has_cblas(info)
+             if lib is not None:
+                 info['language'] = 'c'
+-                info['libraries'] = [lib]
++                info['libraries'] = lib
+                 info['define_macros'] = [('HAVE_CBLAS', None)]
+         self.set_info(**info)
+ 
+@@ -1717,16 +1692,16 @@ class blas_info(system_info):
+                 # check for cblas lib, and if not present check for blas lib.
+                 try:
+                     c.link_executable(obj, os.path.join(tmpdir, "a.out"),
+-                                      libraries=["cblas"],
++                                      libraries=info["libraries"],
+                                       library_dirs=info['library_dirs'],
+                                       extra_postargs=info.get('extra_link_args', []))
+-                    res = "cblas"
++                    res = info["libraries"]
+                 except distutils.ccompiler.LinkError:
+                     c.link_executable(obj, os.path.join(tmpdir, "a.out"),
+                                       libraries=["blas"],
+                                       library_dirs=info['library_dirs'],
+                                       extra_postargs=info.get('extra_link_args', []))
+-                    res = "blas"
++                    res = ["blas"]
+             except distutils.ccompiler.CompileError:
+                 res = None
+         finally:
diff --git a/dev-python/numpy/numpy-1.15.4.ebuild b/dev-python/numpy/numpy-1.15.4.ebuild
new file mode 100644
index 000000000000..9bc29bd049be
--- /dev/null
+++ b/dev-python/numpy/numpy-1.15.4.ebuild
@@ -0,0 +1,145 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6,7} )
+PYTHON_REQ_USE="threads(+)"
+
+FORTRAN_NEEDED=lapack
+
+inherit distutils-r1 flag-o-matic fortran-2 multiprocessing toolchain-funcs
+
+DOC_PV="${PV}"
+DOC_P="${PN}-${DOC_PV}"
+
+DESCRIPTION="Fast array and numerical python library"
+HOMEPAGE="https://www.numpy.org"
+SRC_URI="
+	mirror://pypi/${PN:0:1}/${PN}/${P}.zip
+	doc? (
+		http://docs.scipy.org/doc/${DOC_P}/${PN}-html-${DOC_PV}.zip
+		http://docs.scipy.org/doc/${DOC_P}/${PN}-ref-${DOC_PV}.pdf
+		http://docs.scipy.org/doc/${DOC_P}/${PN}-user-${DOC_PV}.pdf
+	)"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris"
+IUSE="doc lapack test"
+
+RDEPEND="lapack? ( virtual/cblas virtual/lapack )"
+DEPEND="${RDEPEND}
+	app-arch/unzip
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	lapack? ( virtual/pkgconfig )
+	test? (
+		dev-python/pytest[${PYTHON_USEDEP}]
+	)"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.15.4-no-hardcode-blas.patch
+)
+
+src_unpack() {
+	default
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+	fi
+}
+
+pc_incdir() {
+	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
+		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
+		sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+		| tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+	if use lapack; then
+		append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas lapack)"
+		local libdir="${EPREFIX}"/usr/$(get_libdir)
+		cat >> site.cfg <<-EOF || die
+			[blas]
+			include_dirs = $(pc_incdir cblas)
+			library_dirs = $(pc_libdir cblas blas):${libdir}
+			blas_libs = $(pc_libs cblas blas)
+			[lapack]
+			library_dirs = $(pc_libdir lapack):${libdir}
+			lapack_libs = $(pc_libs lapack)
+		EOF
+	else
+		export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None
+	fi
+
+	export CC="$(tc-getCC) ${CFLAGS}"
+
+	append-flags -fno-strict-aliasing
+
+	# See progress in http://projects.scipy.org/scipy/numpy/ticket/573
+	# with the subtle difference that we don't want to break Darwin where
+	# -shared is not a valid linker argument
+	if [[ ${CHOST} != *-darwin* ]]; then
+		append-ldflags -shared
+	fi
+
+	# only one fortran to link with:
+	# linking with cblas and lapack library will force
+	# autodetecting and linking to all available fortran compilers
+	append-fflags -fPIC
+	if use lapack; then
+		NUMPY_FCONFIG="config_fc --noopt --noarch"
+		# workaround bug 335908
+		[[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95"
+	fi
+
+	# don't version f2py, we will handle it.
+	sed -i -e '/f2py_exe/s: + os\.path.*$::' numpy/f2py/setup.py || die
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	export MAKEOPTS=-j1 # bug #660754
+
+	local python_makeopts_jobs=""
+	python_is_python3 || python_makeopts_jobs="-j $(makeopts_jobs)"
+	distutils-r1_python_compile \
+		${python_makeopts_jobs} \
+		${NUMPY_FCONFIG}
+}
+
+python_test() {
+	distutils_install_for_testing --single-version-externally-managed --record "${TMPDIR}/record.txt" ${NUMPY_FCONFIG}
+
+	cd "${TMPDIR}" || die
+
+	${EPYTHON} -c "
+import numpy, sys
+r = numpy.test(label='full', verbose=3)
+sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install() {
+	distutils-r1_python_install ${NUMPY_FCONFIG}
+}
+
+python_install_all() {
+	local DOCS=( THANKS.txt )
+
+	if use doc; then
+		local HTML_DOCS=( "${WORKDIR}"/html/. )
+		DOCS+=( "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf )
+	fi
+
+	distutils-r1_python_install_all
+}
diff --git a/dev-python/numpy/numpy-9999.ebuild b/dev-python/numpy/numpy-9999.ebuild
index dd08eecdb020..b2a2c5ad27e4 100644
--- a/dev-python/numpy/numpy-9999.ebuild
+++ b/dev-python/numpy/numpy-9999.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
 
-PYTHON_COMPAT=( python2_7 python3_{4,5,6,7} )
+PYTHON_COMPAT=( python3_{5,6,7} )
 PYTHON_REQ_USE="threads(+)"
 
 FORTRAN_NEEDED=lapack