gentoo resync : 14.07.2018

12 files changed, 719 insertions, 0 deletions

diff --git a/dev-python/astropy/Manifest b/dev-python/astropy/Manifest
new file mode 100644
index 000000000000..08d9c8eb7612
--- /dev/null
+++ b/dev-python/astropy/Manifest
@@ -0,0 +1,14 @@
+AUX astropy-1.0.4-system-configobj.patch 601 BLAKE2B 44a6b472c5e7a80d64eebf2cb42af82da5fd4a4690cfeb301fd42b61b41cc861590b72c02af256484a013414fdbb4496e3c61f5ffd7de70caf24057bfb6ca4ae SHA512 9cb9bbb65fb4c1e3f45256643cde6e2c3f5d9cf60bd3ce2d1aab7e1f4d1fc82581e85059b1f8f50af1217836928bec83db5d87633c1252448ddfdbb3ec3b819e
+AUX astropy-1.0.4-system-six.patch 568 BLAKE2B 2dcaebcc21874c4e23c5824f988a9ef1f38ae08e59f84e0e0d18ad4afb5b33801b7ee1c0da40fedddf615d4fae0479f662774bda2b16f68552c0ddf7414c958c SHA512 7687cd3fb2dc8f9d491ec15cc848c53aa58df2405bb1a48d68c384b5a3595502abcf2413bef95963c4fdf30470f95b0906a3fd991ad3b72f54a82ea2da3c8594
+AUX astropy-1.1.1-mark-kown-failures.patch 3418 BLAKE2B 01eba6db8810de60a07560626292f3bcff7208c1ce305763419e10559e60e68c862cafb884952a8df860b5f6c0f0c887915dbc2e80c2bcfc3648a3bcafe34125 SHA512 0b8b29c5cd9c9781c4f64c4595fba11efe1bd6d06be56a80fc8832a295b9c95993281014c642b21d40f3be18835de6d83796977c495a8c2ce1029c935d555962
+AUX astropy-1.2.1-cfitsio-338.patch 667 BLAKE2B a3f4b46ba405a132e2593a63816bc78f0474de4d6abd7e5465931b5cff3ef50077c8096a7bff0eff39ebefc0aede35db69d08b215c6aeb723c18ac14f4b67917 SHA512 4422dc794e2ad3ff91342b521b447115157c464883b928970ccba6a999bd7a1ceea2d5fc48f3c39769be4b9a174d571bd57ba58d1a08d90fa72f626932d60668
+AUX astropy-1.3.3-external-python-pkgs.patch 4890 BLAKE2B b105f42deea1cb99df3a4a76393e1cf682672901abaa4365f9b3ddb6950f89cbc6d505e332453345e2c524fcfd50857c4c208c751aff9ed95da3b45d994c2a2e SHA512 57aecc6768f4e7e3522fd3ec9bf39dbf769be0219df5780d1f535e4b228e9e90f3bc2330c6d8f3c4fab50a435abbfbe1478ca70f8067e5ffd11048783b7379a8
+AUX astropy-1.3.3-mark-known-failures.patch 3374 BLAKE2B 8cb11e06f54231e05571175fb6faafb2e0cda1602733a8393031083ba32d3e0dcec4ef0568b05d0d9e7d4e43488a08392843ac59aef76fed930ddc5f75502b40 SHA512 7a2b9bb3a97ed99efe5c61d98e141e53775a1c106c758d662e22f7f6651b05e1d2ac429983b7fe431a07c9b94a93a43b158d68251a03220d3138683c52083a06
+AUX astropy-ply.py 1674 BLAKE2B 1a23e1fb350c23a9ac35c0bfc4075219fa939642ee456446df59bf48b9f599ecf5ead24d029c054036f7b5911a6d07125c5489670c8f5908fad38abdb05bd719 SHA512 ebf5a7ec8df3c62b2f7ba91a4c5138558583186dfb945c89cc1454f9cafadc0e11bb5390c2aa57a993ca98e04dd06167e94d54fb1acc4b49c16e90dbab6b63d7
+DIST astropy-1.2.1.tar.gz 8179665 BLAKE2B d61dbb7a4e56d9a0273dd87fde5b6ed8b2fc8cd206eb51f57621d0ed48adffb76653e1ee5954a7b33ba6e0e2e9d3edb9a5a5afd269d674a899196280fea379fa SHA512 2ef37537a4c6b2ec50a1d898f600978475c9c5d2cb66ba19d06782656e9ddcb4aa6a8e53217e318448cedac45dac0dce0d8cc2fe94cddc15ebb306b3b0794595
+DIST astropy-1.3.3.tar.gz 8427036 BLAKE2B 60a9f78f01fe3607314d69bc66180f2afb0ca9a53f7916079f18bf982cff2cda8986823ec03ea8ecd439df6d213547067d04425f43536f37baadc1caa56e9db0 SHA512 15956d488a390ab3b4091146bffe6f192f22e7598d00e302c2bcf0ec9728911f48bef3ee4c71d331f58e57aec86292421d27f915ea16027a7f62c5d43f6a12e5
+DIST astropy-2.0.1.tar.gz 8220097 BLAKE2B f9332b828d2204f60a0e032e79fb841235a08ce3be974563fa0818f98d02c95743dc42ec6c8bae5f239c0917b030b073f5a9ee5cbf848682b7d2ca01ef9b5009 SHA512 0677b4f22a9eb7d3334109a639ec14ce904935dc58925d303dc98c27cbac2be7d0e95bd873cc21d3cd92e8e553481d203382c281f91cb7a4e41c27d1ff83aac7
+EBUILD astropy-1.2.1.ebuild 2727 BLAKE2B d7a50ebc6ccd72fb314f2bdfab1bd821fda648b7429d03cd7f8fc68401c7577f61f54cc8c3d70c9a2d7a27732397132700336e01ca9b7da6c93bbfd757812f6d SHA512 c479560ca9fd65499933cfce8a6a91e2d0a550a9a24be920f7b2ee327245a9adad20e757cfc0b87b2bffc5d3ca87510863216230e4db51915be229d6deb7366b
+EBUILD astropy-1.3.3.ebuild 2524 BLAKE2B 46b0f5a2849cc82cb0bb9d40dd5be2a0477981400ae2579d42eb227780cf65ae70226651ab4a589b1b47ffa505eb626f3077e66865febd509c7a68352e8beea2 SHA512 cf3e00df35a6079aca98e164f0fdbe7f2458a7d86c12a04f74ede17d86357e78a35187e2a1b123401ddeaeb2d85d7dbcd980fc3416dbc78971f97d945852c813
+EBUILD astropy-2.0.1.ebuild 2498 BLAKE2B 8c0700e9fcbee948fc2dfe42c32014a6bb32a47e1c116004b9ad7a4a227f7aa0e9850a881198c4be2ff671d7e76597491c26febde7358deb0a17a29bcd937073 SHA512 feb42d98202c85d773540821f9c245d7c5607900f030b2a72927496952bf1f8908479934a58dc2fd34a5d4404c363014f518829441221c7f33fa8e3506da3383
+MISC metadata.xml 573 BLAKE2B 101ff09377b24ffca933b12059f2347b604ce6389420314a049ee16569ba62dad19c88611de4871b55b2fdc5ceef3e57100b52da7160928b3cf511f17e734d16 SHA512 a8054d4eb431348c9840e37a5877c2ce7cd4b73f213c1a24f9d3548dfc63a6756d80ffb9f96f78a053fb4ae2a39a424dbe46257be2e9f892f42ec18ff44fad17
diff --git a/dev-python/astropy/astropy-1.2.1.ebuild b/dev-python/astropy/astropy-1.2.1.ebuild
new file mode 100644
index 000000000000..c7daa8fd56d6
--- /dev/null
+++ b/dev-python/astropy/astropy-1.2.1.ebuild
@@ -0,0 +1,97 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5} )
+
+inherit distutils-r1 xdg-utils
+
+DESCRIPTION="Core functionality for performing astrophysics with Python"
+HOMEPAGE="https://www.astropy.org/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc test"
+
+RDEPEND="
+	dev-libs/expat:0=
+	dev-python/configobj[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.10[${PYTHON_USEDEP}]
+	dev-python/ply[${PYTHON_USEDEP}]
+	dev-python/six[${PYTHON_USEDEP}]
+	>=sci-astronomy/erfa-1.2:0=
+	>=sci-astronomy/wcslib-5:0=
+	sci-libs/cfitsio:0=
+	sys-libs/zlib:0="
+DEPEND="${RDEPEND}
+	>=dev-python/astropy-helpers-1.1[${PYTHON_USEDEP}]
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	virtual/pkgconfig
+	doc? (
+		media-gfx/graphviz
+		$(python_gen_cond_dep 'dev-libs/libxml2[${PYTHON_USEDEP}]' python2_7)
+		$(python_gen_cond_dep 'dev-python/h5py[${PYTHON_USEDEP}]' python2_7)
+		$(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]' python2_7)
+		$(python_gen_cond_dep 'dev-python/pytest[${PYTHON_USEDEP}]' python2_7)
+		$(python_gen_cond_dep 'dev-python/sphinx[${PYTHON_USEDEP}]' python2_7)
+		$(python_gen_cond_dep 'dev-python/wcsaxes[${PYTHON_USEDEP}]' python2_7)
+		$(python_gen_cond_dep 'sci-libs/scipy[${PYTHON_USEDEP}]' python2_7)
+	)
+	test? (
+		dev-libs/libxml2[${PYTHON_USEDEP}]
+		dev-python/pytest[${PYTHON_USEDEP}]
+		dev-python/h5py[${PYTHON_USEDEP}]
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		sci-libs/scipy[${PYTHON_USEDEP}]
+	)"
+
+REQUIRED_USE="doc? ( || ( $(python_gen_useflags 'python2*') ) )"
+
+PATCHES=(
+	"${FILESDIR}/${PN}-1.0.4-system-six.patch"
+	"${FILESDIR}/${PN}-1.0.4-system-configobj.patch"
+	"${FILESDIR}/${PN}-1.1.1-mark-kown-failures.patch"
+	"${FILESDIR}/${PN}-1.2.1-cfitsio-338.patch"
+)
+
+pkg_setup() {
+	use doc && DISTUTILS_ALL_SUBPHASE_IMPLS=( 'python2*' )
+}
+
+python_prepare_all() {
+	export mydistutilsargs="--offline"
+	export ASTROPY_USE_SYSTEM_PYTEST=True
+	rm -r ${PN}_helpers || die
+	cp "${FILESDIR}"/astropy-ply.py astropy/extern/ply.py || die
+	rm -r cextern/{expat,erfa,cfitsio,wcslib} || die
+	sed -i -e '/auto_use/s/True/False/' setup.cfg || die
+	cat >> setup.cfg <<-EOF
+	[build]
+	use_system_libraries=1
+	EOF
+	xdg_environment_reset
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	if use doc; then
+		python_setup "python2*"
+		VARTEXFONTS="${T}"/fonts \
+			MPLCONFIGDIR="${BUILD_DIR}" \
+			PYTHONPATH="${BUILD_DIR}"/lib \
+			esetup.py build_sphinx
+	fi
+}
+
+python_test() {
+	esetup.py test
+}
+
+python_install_all() {
+	use doc && local HTML_DOCS=( docs/_build/html/. )
+	distutils-r1_python_install_all
+}
diff --git a/dev-python/astropy/astropy-1.3.3.ebuild b/dev-python/astropy/astropy-1.3.3.ebuild
new file mode 100644
index 000000000000..0b1ab4a51a60
--- /dev/null
+++ b/dev-python/astropy/astropy-1.3.3.ebuild
@@ -0,0 +1,96 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+
+inherit distutils-r1 xdg-utils
+
+DESCRIPTION="Core functionality for performing astrophysics with Python"
+HOMEPAGE="https://www.astropy.org/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc test"
+
+# ply-3.10 incompatible, keep bundled (bug #622802)
+#rdep: dev-python/ply[${PYTHON_USEDEP}]
+#prep: cp "${FILESDIR}"/astropy-ply.py astropy/extern/ply.py || die
+
+RDEPEND="
+	dev-libs/expat:0=
+	dev-python/configobj[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.10[${PYTHON_USEDEP}]
+	dev-python/six[${PYTHON_USEDEP}]
+	>=sci-astronomy/erfa-1.3:0=
+	>=sci-astronomy/wcslib-5:0=
+	>=sci-libs/cfitsio-3.410:0=
+	sys-libs/zlib:0="
+DEPEND="${RDEPEND}
+	dev-python/astropy-helpers[${PYTHON_USEDEP}]
+	dev-python/cython[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	virtual/pkgconfig
+	doc? (
+		media-gfx/graphviz
+		dev-libs/libxml2[${PYTHON_USEDEP}]
+		dev-python/h5py[${PYTHON_USEDEP}]
+		dev-python/jplephem[${PYTHON_USEDEP}]
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		dev-python/pillow[${PYTHON_USEDEP},jpeg(+)]
+		dev-python/pytest[${PYTHON_USEDEP}]
+		dev-python/pyyaml[${PYTHON_USEDEP}]
+		dev-python/sphinx-gallery[${PYTHON_USEDEP}]
+		sci-libs/scipy[${PYTHON_USEDEP}]
+	)
+	test? (
+		dev-libs/libxml2[${PYTHON_USEDEP}]
+		dev-python/pillow[${PYTHON_USEDEP},jpeg]
+		dev-python/pytest[${PYTHON_USEDEP}]
+		dev-python/pytest-mpl[${PYTHON_USEDEP}]
+		dev-python/h5py[${PYTHON_USEDEP}]
+		sci-libs/scipy[${PYTHON_USEDEP}]
+	)"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.3.3-mark-known-failures.patch
+	"${FILESDIR}"/${PN}-1.3.3-external-python-pkgs.patch
+)
+
+python_prepare_all() {
+	export mydistutilsargs="--offline"
+	export ASTROPY_USE_SYSTEM_PYTEST=True
+	#rm -r ${PN}_helpers || die
+	rm -r cextern/{expat,erfa,cfitsio,wcslib} || die
+	sed -i -e '/auto_use/s/True/False/' setup.cfg || die
+	cat >> setup.cfg <<-EOF
+	[build]
+	use_system_libraries=1
+	EOF
+	xdg_environment_reset
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	if use doc; then
+		mkdir -p examples
+		touch examples/README.txt || die
+		python_setup
+		VARTEXFONTS="${T}"/fonts \
+			MPLCONFIGDIR="${BUILD_DIR}" \
+			PYTHONPATH="${BUILD_DIR}"/lib \
+			esetup.py build_docs --no-intersphinx
+	fi
+}
+
+python_test() {
+	esetup.py test
+}
+
+python_install_all() {
+	use doc && local HTML_DOCS=( docs/_build/html/. )
+	distutils-r1_python_install_all
+}
diff --git a/dev-python/astropy/astropy-2.0.1.ebuild b/dev-python/astropy/astropy-2.0.1.ebuild
new file mode 100644
index 000000000000..cac851d8af66
--- /dev/null
+++ b/dev-python/astropy/astropy-2.0.1.ebuild
@@ -0,0 +1,94 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+
+inherit distutils-r1 xdg-utils
+
+MYPV=${PV/_/}
+S=${WORKDIR}/${PN}-${MYPV}
+
+DESCRIPTION="Core functionality for performing astrophysics with Python"
+HOMEPAGE="https://www.astropy.org/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${PN}-${MYPV}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc test"
+
+RDEPEND="
+	dev-libs/expat:0=
+	dev-python/beautifulsoup:4[${PYTHON_USEDEP}]
+	dev-python/configobj[${PYTHON_USEDEP}]
+	dev-python/h5py[${PYTHON_USEDEP}]
+	dev-python/ipython[${PYTHON_USEDEP}]
+	>=dev-python/jinja-2.7[${PYTHON_USEDEP}]
+	dev-python/jplephem[${PYTHON_USEDEP}]
+	dev-libs/libxml2[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	dev-python/mpmath[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.10[${PYTHON_USEDEP}]
+	dev-python/objgraph[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	dev-python/pillow[${PYTHON_USEDEP},jpeg(+)]
+	dev-python/pytz[${PYTHON_USEDEP}]
+	dev-python/pyyaml[${PYTHON_USEDEP}]
+	dev-python/six[${PYTHON_USEDEP}]
+	>=sci-astronomy/erfa-1.3:0=
+	>=sci-astronomy/wcslib-5:0=
+	>=sci-libs/cfitsio-3.410:0=
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	sci-libs/scikits_image[${PYTHON_USEDEP}]
+	sys-libs/zlib:0=
+"
+DEPEND="
+	>=dev-python/astropy-helpers-2[${PYTHON_USEDEP}]
+	>=dev-python/cython-0.21[${PYTHON_USEDEP}]
+	>=dev-python/jinja-2.7[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.10[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	virtual/pkgconfig
+	doc? (
+		${RDEPEND}
+		media-gfx/graphviz
+		dev-python/pytest[${PYTHON_USEDEP}]
+		>=dev-python/sphinx-1.6[${PYTHON_USEDEP}]
+		>=dev-python/sphinx-gallery-0.1.9[${PYTHON_USEDEP}]
+	)
+	test? (
+		${RDEPEND}
+		dev-python/mock[${PYTHON_USEDEP}]
+		dev-python/pytest[${PYTHON_USEDEP}]
+		dev-python/pytest-mpl[${PYTHON_USEDEP}]
+	)
+"
+
+python_prepare_all() {
+	export mydistutilsargs="--offline"
+	export ASTROPY_USE_SYSTEM_PYTEST=True
+	rm -r ${PN}_helpers || die
+	rm -r cextern/{expat,erfa,cfitsio,wcslib} || die
+	sed -i -e '/auto_use/s/True/False/' setup.cfg || die
+	cat >> setup.cfg <<-EOF
+
+		[build]
+		use_system_libraries=1
+	EOF
+	xdg_environment_reset
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	if use doc; then
+		VARTEXFONTS="${T}"/fonts MPLCONFIGDIR="${T}" PYTHONPATH="${BUILD_DIR}"/lib \
+				   esetup.py build_docs --no-intersphinx
+		HTML_DOCS=( docs/_build/html/. )
+	fi
+}
+
+python_test() {
+	esetup.py test
+}
diff --git a/dev-python/astropy/files/astropy-1.0.4-system-configobj.patch b/dev-python/astropy/files/astropy-1.0.4-system-configobj.patch
new file mode 100644
index 000000000000..9578c0d43571
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.0.4-system-configobj.patch
@@ -0,0 +1,14 @@
+diff -ur astropy-0.4.1/astropy/config/configuration.py astropy-0.4.1.configobj/astropy/config/configuration.py
+--- astropy-0.4.1/astropy/config/configuration.py	2014-09-01 22:41:30.066853605 +0200
++++ astropy-0.4.1.configobj/astropy/config/configuration.py	2014-09-01 22:40:50.793528942 +0200
+@@ -23,7 +23,8 @@
+ import types
+ from warnings import warn
+ 
+-from ..extern.configobj import configobj, validate
++import configobj
++import validate
+ from ..utils.exceptions import AstropyWarning, AstropyDeprecationWarning
+ from ..utils import find_current_module
+ from ..utils.misc import InheritDocstrings
+
diff --git a/dev-python/astropy/files/astropy-1.0.4-system-six.patch b/dev-python/astropy/files/astropy-1.0.4-system-six.patch
new file mode 100644
index 000000000000..8bfab98124b3
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.0.4-system-six.patch
@@ -0,0 +1,12 @@
+diff -ur astropy-0.4.1/astropy/extern/six.py astropy-0.4.1.six/astropy/extern/six.py
+--- astropy-0.4.1/astropy/extern/six.py	2014-09-01 21:57:56.663393218 +0200
++++ astropy-0.4.1.six/astropy/extern/six.py	2014-09-01 21:59:02.940933294 +0200
+@@ -13,7 +13,7 @@
+ # Update this to prevent Astropy from using its bundled copy of six
+ # (but only if some other version of at least _SIX_MIN_VERSION can
+ # be provided)
+-_SIX_SEARCH_PATH = ['astropy.extern.bundled.six', 'six']
++_SIX_SEARCH_PATH = ['six', 'astropy.extern.bundled.six']
+ 
+ 
+ def _find_module(name, path=None):
diff --git a/dev-python/astropy/files/astropy-1.1.1-mark-kown-failures.patch b/dev-python/astropy/files/astropy-1.1.1-mark-kown-failures.patch
new file mode 100644
index 000000000000..2e2c82af5416
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.1.1-mark-kown-failures.patch
@@ -0,0 +1,99 @@
+Author: Ole Streicher <olebole@debian.org>
+Description: Mark all known test failures as xfail.
+ These failures have been discussed with upstream.
+--- a/astropy/io/fits/tests/test_connect.py
++++ b/astropy/io/fits/tests/test_connect.py
+@@ -136,6 +136,8 @@
+         # while reading is to check whether col.null is present. For float columns, col.null
+         # is not initialized
+ 
++# see https://github.com/astropy/astropy/issues/3415
++    @pytest.mark.xfail()
+     def test_read_from_fileobj(self, tmpdir):
+         filename = str(tmpdir.join('test_read_from_fileobj.fits'))
+         hdu = BinTableHDU(self.data)
+@@ -172,6 +174,8 @@
+     def setup_method(self, method):
+         warnings.filterwarnings('always')
+ 
++# see https://github.com/astropy/astropy/issues/3415
++    @pytest.mark.xfail()
+     def test_read(self, tmpdir):
+         filename = str(tmpdir.join('test_read.fits'))
+         self.hdus.writeto(filename)
+@@ -189,6 +193,8 @@
+             Table.read(filename, hdu=0)
+         assert exc.value.args[0] == 'No table found in hdu=0'
+ 
++# see https://github.com/astropy/astropy/issues/3415
++    @pytest.mark.xfail()
+     @pytest.mark.parametrize('hdu', [1, 'first'])
+     def test_read_with_hdu_1(self, tmpdir, hdu):
+         filename = str(tmpdir.join('test_read_with_hdu_1.fits'))
+--- a/astropy/wcs/wcs.py
++++ b/astropy/wcs/wcs.py
+@@ -84,6 +84,8 @@
+ if six.PY3 or platform.system() == 'Windows':
+     __doctest_skip__ = ['WCS.all_world2pix']
+ 
++# see https://github.com/astropy/astropy/issues/3380
++__doctest_skip__ = ['WCS.all_world2pix']
+ 
+ if _wcs is not None:
+     WCSBase = _wcs._Wcs
+--- a/astropy/tests/tests/test_socketblocker.py
++++ b/astropy/tests/tests/test_socketblocker.py
+@@ -66,8 +66,8 @@
+ def _square(x):
+     return x ** 2
+ 
+-
+-@pytest.mark.skipif('not PY3_4 or sys.platform == "win32" or sys.platform.startswith("gnu0")')
++# see https://github.com/astropy/astropy/issues/4193
++@pytest.mark.skipif(True, reason="Blocks on Debian CI test")
+ def test_multiprocessing_forkserver():
+     """
+     Test that using multiprocessing with forkserver works.  Perhaps
+--- a/astropy/coordinates/tests/test_api_ape5.py
++++ b/astropy/coordinates/tests/test_api_ape5.py
+@@ -319,7 +319,8 @@
+     # coordinate object, and one that returns a cartesian matrix but does *not*
+     # require `newobj` or `fk5frame` - this allows optimization of the transform.
+ 
+-
++# Temporary mark until scipy/numpy is fully on 3.5
++@pytest.mark.xfail()
+ def test_highlevel_api():
+     J2001 = time.Time('J2001', scale='utc')
+ 
+--- a/astropy/visualization/tests/test_histogram.py
++++ b/astropy/visualization/tests/test_histogram.py
+@@ -50,6 +50,8 @@
+     assert patches2[0].axes is ax[1]
+ 
+ 
++# see https://github.com/astropy/astropy/issues/4329
++@pytest.mark.xfail()
+ @pytest.mark.skipif('not HAS_PLT')
+ def test_hist_autobin(rseed=0):
+     rng = np.random.RandomState(rseed)
+--- a/astropy/table/tests/test_info.py
++++ b/astropy/table/tests/test_info.py
+@@ -6,6 +6,7 @@
+ import warnings
+ import numpy as np
+ 
++from ...tests.helper import pytest
+ from ...extern import six
+ from ... import units as u
+ from ... import time
+@@ -225,7 +226,8 @@
+         t.info(out=out)
+         assert out.getvalue().splitlines() == exp
+ 
+-
++# see https://github.com/astropy/astropy/issues/4336
++@pytest.mark.xfail()
+ def test_ignore_warnings():
+     t = table.Table([[np.nan, np.nan]])
+     with warnings.catch_warnings(record=True) as warns:
diff --git a/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch b/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch
new file mode 100644
index 000000000000..9a688d959851
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch
@@ -0,0 +1,16 @@
+Author: Ole Streicher <olebole@debian.org>
+Description: Make TFORMx check more flexible
+ The maximal column length in cfitsio changed between version 3370 and 3380.
+ This patch checks their syntax, without a specific length.
+Bug: https://github.com/astropy/astropy/issues/4646
+--- a/astropy/io/fits/tests/test_image.py
++++ b/astropy/io/fits/tests/test_image.py
+@@ -1070,7 +1070,7 @@
+         hdu.writeto(self.temp('test.fits'))
+ 
+         with fits.open(self.temp('test.fits')) as hdul:
+-            assert (hdul['SCI'].data == cube).all()
++            assert np.abs(hdul['SCI'].data - cube).max() < 1./15.
+ 
+     def test_subtractive_dither_seed(self):
+         """
diff --git a/dev-python/astropy/files/astropy-1.3.3-external-python-pkgs.patch b/dev-python/astropy/files/astropy-1.3.3-external-python-pkgs.patch
new file mode 100644
index 000000000000..5c69704df9b0
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.3.3-external-python-pkgs.patch
@@ -0,0 +1,119 @@
+Edit: bicatali@gentoo.org, ply-3.10 incompatible, so keep bundled.
+
+From: Ole Streicher <olebole@debian.org>
+Date: Thu, 12 Jan 2017 11:37:47 +0100
+Subject: Use external python modules instead of convenience copies
+
+---
+ astropy/coordinates/angle_utilities.py |  2 +-
+ astropy/extern/configobj.py            |  5 ++++-
+ astropy/extern/six.py                  |  2 +-
+ astropy/table/jsviewer.py              | 14 ++++++++------
+ astropy/table/tests/test_jsviewer.py   |  6 +++---
+ astropy/tests/helper.py                |  2 +-
+ astropy/units/format/cds.py            |  4 ++--
+ astropy/units/format/generic.py        |  4 ++--
+ astropy/units/format/ogip.py           |  4 ++--
+ 9 files changed, 24 insertions(+), 19 deletions(-)
+
+diff --git a/astropy/extern/configobj.py b/astropy/extern/configobj.py
+index 8d1bd8c..e3bb0e0 100644
+--- a/astropy/extern/configobj.py
++++ b/astropy/extern/configobj.py
+@@ -7,5 +7,8 @@ currently installed version of python.
+ Also, this should actually never actually show up as a docstring, because
+ it should get overwritten by the appropriate configobj docstring.
+ """
++from __future__ import absolute_import
++import validate
++import configobj
++
+ 
+-from .configobj import configobj, validate, __doc__
+diff --git a/astropy/extern/six.py b/astropy/extern/six.py
+index 5398fc0..fb3a30c 100644
+--- a/astropy/extern/six.py
++++ b/astropy/extern/six.py
+@@ -13,7 +13,7 @@ _SIX_MIN_VERSION = StrictVersion('1.10.0')
+ # Update this to prevent Astropy from using its bundled copy of six
+ # (but only if some other version of at least _SIX_MIN_VERSION can
+ # be provided)
+-_SIX_SEARCH_PATH = ['astropy.extern.bundled.six', 'six']
++_SIX_SEARCH_PATH = ['six']
+ 
+ 
+ def _find_module(name, path=None):
+diff --git a/astropy/table/jsviewer.py b/astropy/table/jsviewer.py
+index d0cc380..9f686ea 100644
+--- a/astropy/table/jsviewer.py
++++ b/astropy/table/jsviewer.py
+@@ -30,8 +30,8 @@ class Conf(_config.ConfigNamespace):
+ conf = Conf()
+ 
+ 
+-EXTERN_JS_DIR = abspath(join(dirname(extern.__file__), 'js'))
+-EXTERN_CSS_DIR = abspath(join(dirname(extern.__file__), 'css'))
++EXTERN_JS_DIR = '/usr/share/javascript'
++EXTERN_CSS_DIR = EXTERN_JS_DIR
+ 
+ _SORTING_SCRIPT_PART_1 = """
+ var astropy_sort_num = function(a, b) {{
+@@ -134,22 +134,24 @@ class JSViewer(object):
+     @property
+     def jquery_urls(self):
+         if self._use_local_files:
+-            return ['file://' + join(EXTERN_JS_DIR, 'jquery-3.1.1.min.js'),
+-                    'file://' + join(EXTERN_JS_DIR, 'jquery.dataTables.min.js')]
++            return ['file://' + join(EXTERN_JS_DIR, 'jquery', 'jquery.min.js'),
++                    'file://' + join(EXTERN_JS_DIR, 'jquery-datatables',
++                                     'jquery.dataTables.min.js')]
+         else:
+             return [conf.jquery_url, conf.datatables_url]
+ 
+     @property
+     def css_urls(self):
+         if self._use_local_files:
+-            return ['file://' + join(EXTERN_CSS_DIR,
++            return ['file://' + join(EXTERN_CSS_DIR, 'jquery-datatables', 'css',
+                                      'jquery.dataTables.css')]
+         else:
+             return conf.css_urls
+ 
+     def _jstable_file(self):
+         if self._use_local_files:
+-            return 'file://' + join(EXTERN_JS_DIR, 'jquery.dataTables.min')
++            return 'file://' + join(EXTERN_JS_DIR, 'jquery-datatables',
++                                    'jquery.dataTables.min')
+         else:
+             return conf.datatables_url[:-3]
+ 
+diff --git a/astropy/table/tests/test_jsviewer.py b/astropy/table/tests/test_jsviewer.py
+index 6a8b033..5018bd4 100644
+--- a/astropy/table/tests/test_jsviewer.py
++++ b/astropy/table/tests/test_jsviewer.py
+@@ -145,9 +145,9 @@ def test_write_jsviewer_local(tmpdir):
+         table_id='test',
+         length='50',
+         display_length='10, 25, 50, 100, 500, 1000',
+-        datatables_css_url='file://' + join(EXTERN_DIR, 'css', 'jquery.dataTables.css'),
+-        datatables_js_url='file://' + join(EXTERN_DIR, 'js', 'jquery.dataTables.min.js'),
+-        jquery_url='file://' + join(EXTERN_DIR, 'js', 'jquery-3.1.1.min.js')
++        datatables_css_url='file:///usr/share/javascript/jquery-datatables/css/jquery.dataTables.css',
++        datatables_js_url='file:///usr/share/javascript/jquery-datatables/jquery.dataTables.min.js',
++        jquery_url='file:///usr/share/javascript/jquery/jquery.min.js'
+     )
+     with open(tmpfile) as f:
+         assert f.read().strip() == ref.strip()
+diff --git a/astropy/tests/helper.py b/astropy/tests/helper.py
+index 9e88d1f..94bd40a 100644
+--- a/astropy/tests/helper.py
++++ b/astropy/tests/helper.py
+@@ -40,7 +40,7 @@ __all__ = ['raises', 'enable_deprecations_as_exceptions', 'remote_data',
+            'pickle_protocol', 'generic_recursive_equality_test']
+ 
+ 
+-if os.environ.get('ASTROPY_USE_SYSTEM_PYTEST') or '_pytest' in sys.modules:
++if True:
+     import pytest
+ 
+ else:
diff --git a/dev-python/astropy/files/astropy-1.3.3-mark-known-failures.patch b/dev-python/astropy/files/astropy-1.3.3-mark-known-failures.patch
new file mode 100644
index 000000000000..1a30bc1d10ab
--- /dev/null
+++ b/dev-python/astropy/files/astropy-1.3.3-mark-known-failures.patch
@@ -0,0 +1,84 @@
+From: Ole Streicher <olebole@debian.org>
+Date: Tue, 13 Dec 2016 09:41:39 +0100
+Subject: Mark all known test failures as xfail. These failures have been
+ discussed with upstream.
+
+---
+ astropy/table/tests/test_info.py                                      | 4 +++-
+ astropy/tests/tests/test_socketblocker.py                             | 4 ++--
+ astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py | 4 ++++
+ astropy/vo/samp/tests/test_standard_profile.py                        | 2 ++
+ 4 files changed, 11 insertions(+), 3 deletions(-)
+
+diff --git a/astropy/table/tests/test_info.py b/astropy/table/tests/test_info.py
+index 2bbcc7a..50fbdb4 100644
+--- a/astropy/table/tests/test_info.py
++++ b/astropy/table/tests/test_info.py
+@@ -8,6 +8,7 @@ from collections import OrderedDict
+ 
+ import numpy as np
+ 
++from ...tests.helper import pytest
+ from ...extern import six
+ from ...extern.six.moves import cStringIO as StringIO
+ from ... import units as u
+@@ -229,7 +230,8 @@ def test_class_attribute():
+         t.info(out=out)
+         assert out.getvalue().splitlines() == exp
+ 
+-
++# see https://github.com/astropy/astropy/issues/4336
++@pytest.mark.xfail()
+ def test_ignore_warnings():
+     t = table.Table([[np.nan, np.nan]])
+     with warnings.catch_warnings(record=True) as warns:
+diff --git a/astropy/tests/tests/test_socketblocker.py b/astropy/tests/tests/test_socketblocker.py
+index c362fa5..783defe 100644
+--- a/astropy/tests/tests/test_socketblocker.py
++++ b/astropy/tests/tests/test_socketblocker.py
+@@ -66,8 +66,8 @@ PY3_4 = sys.version_info[:2] >= (3, 4)
+ def _square(x):
+     return x ** 2
+ 
+-
+-@pytest.mark.skipif('not PY3_4 or sys.platform == "win32" or sys.platform.startswith("gnu0")')
++# see https://github.com/astropy/astropy/issues/4193
++@pytest.mark.skipif(True, reason="Blocks on Debian CI test")
+ def test_multiprocessing_forkserver():
+     """
+     Test that using multiprocessing with forkserver works.  Perhaps
+diff --git a/astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py b/astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py
+index 53436dd..4c710e7 100644
+--- a/astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py
++++ b/astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py
+@@ -3,6 +3,8 @@ from ..core import WCSAxes
+ import matplotlib.pyplot as plt
+ from matplotlib.backend_bases import KeyEvent
+ 
++import pytest
++
+ from ....wcs import WCS
+ from ....extern import six
+ from ....coordinates import FK5
+@@ -93,6 +95,8 @@ class TestDisplayWorldCoordinate(BaseImageTests):
+ 
+         assert string_world5 == six.u('267.652 -28\xb046\'23" (world, overlay 3)')
+ 
++    # See https://github.com/astropy/astropy/issues/5601
++    @pytest.mark.xfail()
+     def test_cube_coords(self, tmpdir):
+         wcs = WCS(self.cube_header)
+ 
+diff --git a/astropy/vo/samp/tests/test_standard_profile.py b/astropy/vo/samp/tests/test_standard_profile.py
+index 325ac96..ac25e55 100644
+--- a/astropy/vo/samp/tests/test_standard_profile.py
++++ b/astropy/vo/samp/tests/test_standard_profile.py
+@@ -62,6 +62,8 @@ class TestStandardProfile(object):
+ 
+         self.hub.stop()
+ 
++    # see https://github.com/astropy/astropy/issues/5460
++    @pytest.mark.skipif(True, reason="Setup fails due to SSL problems")
+     def test_main(self):
+ 
+         self.client1_id = self.client1.get_public_id()
diff --git a/dev-python/astropy/files/astropy-ply.py b/dev-python/astropy/files/astropy-ply.py
new file mode 100644
index 000000000000..19eb104c4ca0
--- /dev/null
+++ b/dev-python/astropy/files/astropy-ply.py
@@ -0,0 +1,58 @@
+# Licensed under a 3-clause BSD style license - see LICENSE.rst
+
+"""
+Handle loading ply package from system or from the bundled copy
+"""
+
+import imp
+from distutils.version import StrictVersion
+
+
+def _find_module(name, path=None):
+    """
+    Alternative to `imp.find_module` that can also search in subpackages.
+    """
+
+    parts = name.split('.')
+
+    for part in parts:
+        if path is not None:
+            path = [path]
+
+        fh, path, descr = imp.find_module(part, path)
+
+    return fh, path, descr
+
+_PLY_MIN_VERSION = StrictVersion('3.4')
+
+# Update this to prevent Astropy from using its bundled copy of ply
+# (but only if some other version of at least _PLY_MIN_VERSION can
+# be provided)
+_PLY_SEARCH_PATH = ['ply']
+
+
+for mod_name in _PLY_SEARCH_PATH:
+    try:
+        mod_info = _find_module(mod_name)
+        #mod_lex_info = _find_module(mod_name + '.lex')
+    except ImportError:
+        continue
+
+    mod = imp.load_module(__name__, *mod_info)
+    #mod_lex = imp.load_module(__name__ + '.lex', *mod_lex_info)
+
+    try:
+    #    if StrictVersion(mod_lex.__version__) >= _PLY_MIN_VERSION:
+    #        break
+        break
+    except (AttributeError, ValueError):
+        # Attribute error if the ply module isn't what it should be and doesn't
+        # have a .__version__; ValueError if the version string exists but is
+        # somehow bogus/unparseable
+        continue
+else:
+    raise ImportError(
+        "Astropy requires the 'ply' module of minimum version {0}; "
+        "normally this is bundled with the astropy package so if you get "
+        "this warning consult the packager of your Astropy "
+        "distribution.".format(_PLY_MIN_VERSION))
diff --git a/dev-python/astropy/metadata.xml b/dev-python/astropy/metadata.xml
new file mode 100644
index 000000000000..85615ff002ce
--- /dev/null
+++ b/dev-python/astropy/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="project">
+    <email>sci-astronomy@gentoo.org</email>
+    <name>Gentoo Astronomy Project</name>
+  </maintainer>
+  <longdescription lang="en">
+  Astropy is a community-driven package intended to contain much of
+  the core functionality and some common tools needed for performing
+  astronomy and astrophysics with Python.
+</longdescription>
+  <upstream>
+    <remote-id type="pypi">astropy</remote-id>
+  </upstream>
+</pkgmetadata>