diff options
author | V3n3RiX <venerix@redcorelinux.org> | 2019-07-10 23:40:16 +0100 |
---|---|---|
committer | V3n3RiX <venerix@redcorelinux.org> | 2019-07-10 23:40:16 +0100 |
commit | 51af5f0eb4cddbe6aa7953717873691d77aae9ff (patch) | |
tree | 1541525274162b033ebbc3ed38abaf335fbbd49a /dev-perl/Boulder | |
parent | 7014a5a3ea0feffab9701fdd6b64cc7667a985af (diff) |
gentoo resync : 11.07.2019
Diffstat (limited to 'dev-perl/Boulder')
-rw-r--r-- | dev-perl/Boulder/Boulder-1.300.0-r2.ebuild | 51 | ||||
-rw-r--r-- | dev-perl/Boulder/Manifest | 4 | ||||
-rw-r--r-- | dev-perl/Boulder/files/Boulder-1.30-no-xml-parser-check.patch | 30 | ||||
-rw-r--r-- | dev-perl/Boulder/metadata.xml | 6 |
4 files changed, 89 insertions, 2 deletions
diff --git a/dev-perl/Boulder/Boulder-1.300.0-r2.ebuild b/dev-perl/Boulder/Boulder-1.300.0-r2.ebuild new file mode 100644 index 000000000000..a9c75068e9ba --- /dev/null +++ b/dev-perl/Boulder/Boulder-1.300.0-r2.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +DIST_AUTHOR=LDS +DIST_VERSION=1.30 +DIST_EXAMPLES=( "eg/*" ) +inherit perl-module + +DESCRIPTION="An API for hierarchical tag/value structures" + +SLOT="0" +KEYWORDS="~amd64 ~ia64 ~ppc ~sparc ~x86" +IUSE="genbank store xml" + +RDEPEND=" + genbank? ( dev-perl/CGI ) + store? ( virtual/perl-DB_File ) + xml? ( dev-perl/XML-Parser ) +" +DEPEND="${RDEPEND} + virtual/perl-ExtUtils-MakeMaker +" +PATCHES=( + "${FILESDIR}/${PN}-${DIST_VERSION}-no-xml-parser-check.patch" +) +PERL_RM_FILES=( + # Incomplete, instructs not to use, deps not in Gentoo + "Boulder/Labbase.pm" +) +src_prepare() { + use xml || PERL_RM_FILES+=( + "Boulder/XML.pm" + ) + use genbank || PERL_RM_FILES+=( + "Boulder/Genbank.pm" + "Stone/GB_Sequence.pm" + "doc/genbank_tags.txt" + "eg/gb_get" + "eg/gb_search" + "eg/genbank.pl" + "eg/genbank2.pl" + "eg/genbank3.pl" + ) + use store || PERL_RM_FILES+=( + "Boulder/Store.pm" + "t/store.t" + ) + perl-module_src_prepare +} diff --git a/dev-perl/Boulder/Manifest b/dev-perl/Boulder/Manifest index 2690d5aba887..99813608eb65 100644 --- a/dev-perl/Boulder/Manifest +++ b/dev-perl/Boulder/Manifest @@ -1,3 +1,5 @@ +AUX Boulder-1.30-no-xml-parser-check.patch 795 BLAKE2B e109ec3a4ec7bd29e06c41e8aad25d70a58a5f63546bfd18f1d81ad99a208495a1a94c0bf8a86743f234104b4915749ce3aa0ad0c2e85939d05e8c8084e90a56 SHA512 d4baa7f9b1d2b3e0ace66cb3e3508ed9f711dd9786a0af1fb030b1d2cd8acda1337bea8004a1e1799fb3706bc7c742a1691a0ae5c97d00af774ed9939cc62459 DIST Boulder-1.30.tar.gz 91202 BLAKE2B e1c7f44248d9b257669713b0168b395cad73713476c0cbf688c1513f99552cafc428c7118bdc13ec33018d198434d36d76cbbfe06308d17df230c951ce85c8d2 SHA512 787c80fb578afd8495e57d96f4db69c6d02f69957593cae9e1e130f58f6b34b79bebe60e2484e6cbc81906e60f79df0f55e9479cffc5c0b800c00c6946d5479e EBUILD Boulder-1.300.0-r1.ebuild 355 BLAKE2B a8d50b85f2eb88709541016901cbb11406b5388715ff48216d9c83a584ea94dae88b3e008f5171c1575a2d5a162a81f20e1ce3b8b0e41a2e7e6441297307de0f SHA512 f2165a70f9a29578453e7c6888306ae95e4b67e574b26c401924884240e3597786781912758cc32ca6b1ad620320a7a6e10a348b140cbc334cd15daa7f3f2d14 -MISC metadata.xml 1992 BLAKE2B 996bfe3a5f2f3a5b95af031d34eb36ae507ae76324f45ee32e5868b435000cbe253dc8df0fd67320718e6f5a8b9fb1913d6b49148b83f2a6aef69ec538ede544 SHA512 9530e1dac2e2c3aa10c9f5b0021e273af9ebb0b2c4a306645c3490235eb3e729819c84454c7d4272c82aaec7657640978cde84ca3750ed498d160b23c5f704c2 +EBUILD Boulder-1.300.0-r2.ebuild 1015 BLAKE2B 8a54e30b606df33b1481e65145d7668a4ee48859691e6de7f9e411277d370701323b5999bc15a96c4bf21448f18e7b3ea628fcd689d87439c21f83d93c5bc041 SHA512 605e04e6ae1eeb08ffc370decb879335c97d366d9b531e12f3768802b67af269a7be2b4ad418c862e3b7e569149d0955278f67da34452ead1d9ce474be889f44 +MISC metadata.xml 2146 BLAKE2B 9c6b153e95557ea6731498a942462f4276b69978209d15a840ddd1d28381a7ea461a154cffd519fbc10f796d1cab3429832aa17b4e9e4208fc555145e1bbea9a SHA512 67e0a72cc4203933d8ec3cc01a7585bd78b0fe2b1045670e4d271f43c4f4ed3ae001611d27f8aa09b9ac30e5a664fe8b3f2699978d0e6f9dd859bde4e0a0d1d1 diff --git a/dev-perl/Boulder/files/Boulder-1.30-no-xml-parser-check.patch b/dev-perl/Boulder/files/Boulder-1.30-no-xml-parser-check.patch new file mode 100644 index 000000000000..13ce87969fb1 --- /dev/null +++ b/dev-perl/Boulder/files/Boulder-1.30-no-xml-parser-check.patch @@ -0,0 +1,30 @@ +From 82eaa751a4aebb6cce70b83407c1fafd13334130 Mon Sep 17 00:00:00 2001 +From: Kent Fredric <kentnl@gentoo.org> +Date: Wed, 10 Jul 2019 02:58:13 +1200 +Subject: Remove hardcoded XML::Parser check + +This test isn't necessary and is a vestigal side effect of old build +chains that didn't have prereqs. + +As this dependency is only needed if you're using Boulder::XML, its +rather redundant. +--- + Makefile.PL | 3 --- + 1 file changed, 3 deletions(-) + +diff --git a/Makefile.PL b/Makefile.PL +index 2fe3176..245f16e 100644 +--- a/Makefile.PL ++++ b/Makefile.PL +@@ -1,8 +1,5 @@ + use ExtUtils::MakeMaker; + +-eval "use XML::Parser; 1" +- || warn "XML::Parser module not found. This module is required to use Boulder::XML\n"; +- + WriteMakefile( + 'NAME' => 'Boulder', + 'DISTNAME' => 'Boulder', +-- +2.22.0 + diff --git a/dev-perl/Boulder/metadata.xml b/dev-perl/Boulder/metadata.xml index 31ec77c20009..2971ad7b7ca4 100644 --- a/dev-perl/Boulder/metadata.xml +++ b/dev-perl/Boulder/metadata.xml @@ -12,7 +12,6 @@ <remote-id type="cpan-module">Boulder::Blast::NCBI</remote-id> <remote-id type="cpan-module">Boulder::Blast::WU</remote-id> <remote-id type="cpan-module">Boulder::Genbank</remote-id> - <remote-id type="cpan-module">Boulder::Labbase</remote-id> <remote-id type="cpan-module">Boulder::LocusLink</remote-id> <remote-id type="cpan-module">Boulder::Medline</remote-id> <remote-id type="cpan-module">Boulder::Omim</remote-id> @@ -35,4 +34,9 @@ <remote-id type="cpan-module">UnigeneAccessor</remote-id> <remote-id type="cpan-module">Yank</remote-id> </upstream> + <use> + <flag name="genbank">Provide support with Boulder::Genbank for decoding Genbank data records</flag> + <flag name="store">Provide support with Boulder::Store for persisting Stone objects</flag> + </use> + </pkgmetadata> |