gentoo resync : 14.07.2018

3 files changed, 0 insertions, 137 deletions

diff --git a/dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild b/dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild
deleted file mode 100644
index fbd25fa1e003..000000000000
--- a/dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild
+++ /dev/null
@@ -1,93 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DIST_AUTHOR=LDS
-DIST_VERSION=1.17
-DIST_EXAMPLES=("eg/*")
-inherit perl-module
-
-DESCRIPTION="Interface to Distributed Annotation System"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=">=virtual/perl-IO-Compress-1.0
-	sci-biology/bioperl
-	>=dev-perl/HTML-Parser-3
-	>=dev-perl/libwww-perl-5
-	>=virtual/perl-MIME-Base64-2.12"
-RDEPEND="${DEPEND}"
-
-optdep_notice() {
-	local i
-	elog "This package has several modules which may require additional dependencies"
-	elog "to use. However, it is up to you to install them separately if you need this"
-	elog "optional functionality:"
-	elog
-	i="$(if has_version 'dev-perl/CGI'; then echo '[I]'; else echo '[ ]'; fi)"
-	elog " $i dev-perl/CGI"
-	elog "     - Running a reference DAS server driven by an AGP File via"
-	elog "       Bio::Das::AGPServer::Daemon"
-
-	if use test; then
-		elog
-		elog "This module will perform additional tests if these dependencies are"
-		elog "pre-installed"
-	fi
-}
-src_test() {
-	local MODULES=(
-		"Bio::Das ${DIST_VERSION}"
-		"Bio::Das::AGPServer::Config 1.0"
-		"Bio::Das::AGPServer::Parser"
-		"Bio::Das::AGPServer::SQLStorage"
-		"Bio::Das::AGPServer::SQLStorage::CSV::DB"
-		"Bio::Das::AGPServer::SQLStorage::MySQL::DB"
-		"Bio::Das::DSN"
-		"Bio::Das::Feature 0.91"
-		"Bio::Das::FeatureIterator 0.01"
-		"Bio::Das::HTTP::Fetch 1.11"
-		"Bio::Das::Map 1.01"
-		"Bio::Das::Request"
-		"Bio::Das::Request::Dnas"
-		"Bio::Das::Request::Dsn"
-		"Bio::Das::Request::Entry_points"
-		"Bio::Das::Request::Feature2Segments"
-		"Bio::Das::Request::Features"
-		"Bio::Das::Request::Sequences"
-		"Bio::Das::Request::Stylesheet"
-		"Bio::Das::Request::Types"
-		"Bio::Das::Segment 0.91"
-		"Bio::Das::Stylesheet 1.00"
-		"Bio::Das::Type"
-		"Bio::Das::TypeHandler"
-		"Bio::Das::Util 0.01"
-	)
-	has_version dev-perl/CGI && MODULES+=(
-		"Bio::Das::AGPServer::Daemon"
-	)
-	local failed=()
-	for dep in "${MODULES[@]}"; do
-		ebegin "Compile testing ${dep}"
-			perl -Mblib="${S}" -M"${dep} ()" -e1
-		eend $? || failed+=( "$dep" )
-	done
-	if [[ ${failed[@]} ]]; then
-		echo
-		eerror "One or more modules failed compile:";
-		for dep in "${failed[@]}"; do
-			eerror "  ${dep}"
-		done
-		die "Failing due to module compilation errors";
-	fi
-	if has "network" ${DIST_TEST_OVERRIDE:-${DIST_TEST:-do parallel}}; then
-		perl-module_src_test
-	else
-		ewarn "Functional parts of these tests require network access"
-		ewarn "For details, see:"
-		ewarn "https://wiki.gentoo.org/wiki/Project:Perl/maint-notes/dev-perl/Bio-Das"
-	fi
-}
diff --git a/dev-perl/Bio-Das/Manifest b/dev-perl/Bio-Das/Manifest
deleted file mode 100644
index 94388e0a2336..000000000000
--- a/dev-perl/Bio-Das/Manifest
+++ /dev/null
@@ -1,3 +0,0 @@
-DIST Bio-Das-1.17.tar.gz 105270 BLAKE2B 0203891fe6f4a0847040f43817d9e0a2eb12dd76eebbab4616f2d9a16c35aa6fa3632071e66a135a49e2a308c30ec971eefabb11371e0abfbe6293fffb4a7b55 SHA512 c44d3571f4f4c777d8315db19cf704cc5ff4d48a8edae8b9a43f7d47df709bee476d810ce1e96bec5ccf44b7cf3373f79b892c0a1d17715f19ffdff81558292e
-EBUILD Bio-Das-1.170.0-r2.ebuild 2557 BLAKE2B 0348a208fea7df69883a3e701e67026c397e60bd88f817cbc5aca01ddd6e96f69a9689b4a4b0ee925437e607c8ce99535840869ffcd2ab43de89a90ab4926bae SHA512 93a97d39620eb67fa9cb1d1f86a65c52a86640440ac0d4de3d397f225e9af243d2b60b4a313c4252a280d3ca54e893225bbae835461fb70c41e3fb894b6bcdae
-MISC metadata.xml 2286 BLAKE2B b3ac90af3f6f506ea2753eae897ca91f3a826455f4959d506e6594e67dd5e42f2ff8db207d058a51659ff717ce4cd55fd2f5b775337e5bf9a8339021a59d127f SHA512 0806e77015426b7bf32f9021e00dfc7f2b04f255382e7973f5283072d9bb92d81cb6611c438c5398b77d0b0fc128fc50e9b5a2e165d0e09ed0b056b3dc172e12
diff --git a/dev-perl/Bio-Das/metadata.xml b/dev-perl/Bio-Das/metadata.xml
deleted file mode 100644
index 0fe7c98c9974..000000000000
--- a/dev-perl/Bio-Das/metadata.xml
+++ /dev/null
@@ -1,41 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci@gentoo.org</email>
-    <name>Gentoo Science Project</name>
-  </maintainer>
-  <maintainer type="project">
-    <email>perl@gentoo.org</email>
-    <name>Gentoo Perl Project</name>
-  </maintainer>
-  <upstream>
-    <remote-id type="cpan">Bio-Das</remote-id>
-    <remote-id type="cpan-module">Bio::Das</remote-id>
-    <remote-id type="cpan-module">Bio::Das::AGPServer::Config</remote-id>
-    <remote-id type="cpan-module">Bio::Das::AGPServer::Daemon</remote-id>
-    <remote-id type="cpan-module">Bio::Das::AGPServer::Parser</remote-id>
-    <remote-id type="cpan-module">Bio::Das::AGPServer::SQLStorage</remote-id>
-    <remote-id type="cpan-module">Bio::Das::AGPServer::SQLStorage::CSV::DB</remote-id>
-    <remote-id type="cpan-module">Bio::Das::AGPServer::SQLStorage::MySQL::DB</remote-id>
-    <remote-id type="cpan-module">Bio::Das::DSN</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Feature</remote-id>
-    <remote-id type="cpan-module">Bio::Das::FeatureIterator</remote-id>
-    <remote-id type="cpan-module">Bio::Das::HTTP::Fetch</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Map</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Request</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Request::Dnas</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Request::Dsn</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Request::Entry_points</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Request::Feature2Segments</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Request::Features</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Request::Sequences</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Request::Stylesheet</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Request::Types</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Segment</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Stylesheet</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Type</remote-id>
-    <remote-id type="cpan-module">Bio::Das::TypeHandler</remote-id>
-    <remote-id type="cpan-module">Bio::Das::Util</remote-id>
-  </upstream>
-</pkgmetadata>