From 1a95f960273f276a4fdefb824336b073d83bcb5e Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Mon, 9 Dec 2024 02:07:41 +0000 Subject: gentoo auto-resync : 09:12:2024 - 02:07:41 --- sys-cluster/Manifest.gz | Bin 11710 -> 11713 bytes sys-cluster/openmpi/Manifest | 2 + sys-cluster/openmpi/openmpi-5.0.6.ebuild | 142 +++++++++++++++++++++++++++++++ sys-cluster/pmix/Manifest | 2 + sys-cluster/pmix/pmix-5.0.4.ebuild | 58 +++++++++++++ sys-cluster/prrte/Manifest | 2 + sys-cluster/prrte/prrte-3.0.7.ebuild | 45 ++++++++++ 7 files changed, 251 insertions(+) create mode 100644 sys-cluster/openmpi/openmpi-5.0.6.ebuild create mode 100644 sys-cluster/pmix/pmix-5.0.4.ebuild create mode 100644 sys-cluster/prrte/prrte-3.0.7.ebuild (limited to 'sys-cluster') diff --git a/sys-cluster/Manifest.gz b/sys-cluster/Manifest.gz index 934f1c5a7fd8..0bba6d62bee0 100644 Binary files a/sys-cluster/Manifest.gz and b/sys-cluster/Manifest.gz differ diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest index 5beccc72cf35..bdc3c6a032c2 100644 --- a/sys-cluster/openmpi/Manifest +++ b/sys-cluster/openmpi/Manifest @@ -2,7 +2,9 @@ AUX openmpi-4.1.6-incompatible-pointers.patch 8095 BLAKE2B c095a4c0c3fba74a8c1f1 DIST openmpi-4.1.6.tar.bz2 10017002 BLAKE2B 4f119e1ed9b8787f0f860295ab1721fe2fd5300b8e182230a9eba3a864680b02bbd30618cc6d798a693a121626fc0ad5f447144d9ba91becb734f1a530d7a23a SHA512 0ef3240f9c436fb19b67e836cac376eafeb7825d12de3387dad04329dee9f182799d17d785ea23eba763810f479015bb5230593c28950b616b2f0aa1c0a81e71 DIST openmpi-5.0.3.tar.bz2 29761888 BLAKE2B a084813f3dada12bbe77dcc6ef0ec0454980779f97ccb46f37f3d7df3bf7299e6484ec3427c2ca784e70876f62dc061a13cb7f08348e3d649e27f2bece9a09ac SHA512 60e8f6dcd6b1531ce8164e02f40be9a364ab484166a2a7b13bdff115a508f0596e97ad0a4204a47799ae608ba484a7ba9503042bddffe675f09ce22071b0b4a9 DIST openmpi-5.0.5.tar.bz2 30000495 BLAKE2B 740e5dbc7e54b8f4eac4fa2c40fb5a0ccfba201dff15ccc84899f28dfad0147078ef6c2b0585615c93fc6edb70b665b3f7a9adea5e5e53a7563ae4c7a6ccbada SHA512 d0a137ebdeb578f0457113c6dd0f84d407c88d8f8844e6796114c8026d7391ebfb29d105f16289338eb3ac653ae9d3c0bdc4aa651402444b2ca91c1c447dc409 +DIST openmpi-5.0.6.tar.bz2 30331784 BLAKE2B 72418c4d2cdc0628214e0c2db2e8d2dd52234a3888d7344eff23576b19de94d4cb74b168120d72cedeea8c835db363d83b61319fcdf13277c541003606f4558a SHA512 097f7bb18d506b362f16d46df308b387e3173068ba8688739db756919453e1fe947c6d8c2e098481617d8c6bbecb8990002db42f284b1732a80ef3edaaa29f20 EBUILD openmpi-4.1.6.ebuild 5652 BLAKE2B 28dd2334bab9a82b8d764cfe8fd22da8649d809f33d9377c2c3fbc232bb7f36ae8ed29835f850fe6cf1b188d6a3f56bcb289c8c05a7094452b86da2ddafc5362 SHA512 be206d7e4031391a16764f997ac6f962a2b1955d7b4ba49959b4ec009e82f5701f42895841a923c792f06a0514e26b28407287afc9549871697bfee543d6e4a1 EBUILD openmpi-5.0.3.ebuild 3713 BLAKE2B 1fd6f4117e83a4469b1912469106960c0e9ed77a9050d716ebdfed67786c5d91428bdac46e2f2783ada2cfcab4f32e3918e87fe808f05b875844b1c44a8eab5c SHA512 6ec4da5adb735308e8a8f91ec2cad86c90a8aa600892cb5f8674e558fb5229554a9173ad9bf2ea241c2658254d67cc13b79dcfcc3f92f8038a30c5327e6cc8b4 EBUILD openmpi-5.0.5.ebuild 3752 BLAKE2B cd64c69fa2af87e8fe95ffe00171446ede195a590cbbe6211dc522fc2ddc9be4250e43009f09d2f91b2edc1659f5c9ec2d876df2200bfdd264267e60f2568bd8 SHA512 59d13b631f6c5cda5648cc0e53c834827643accd767001e1aded8b01708e2d76f1ab484c9ee66040cebbd1d2471215a14c1bf01c10c1688297bc408f0500f808 +EBUILD openmpi-5.0.6.ebuild 3752 BLAKE2B cd64c69fa2af87e8fe95ffe00171446ede195a590cbbe6211dc522fc2ddc9be4250e43009f09d2f91b2edc1659f5c9ec2d876df2200bfdd264267e60f2568bd8 SHA512 59d13b631f6c5cda5648cc0e53c834827643accd767001e1aded8b01708e2d76f1ab484c9ee66040cebbd1d2471215a14c1bf01c10c1688297bc408f0500f808 MISC metadata.xml 619 BLAKE2B e1073cdab4b3b0013354a95a53354f1040edbde8cb0f864a28ca1a9e9e7f6974e2db4a9a885c8616cfba41b7b472af4168d92ad3b5cd9e051598db1a4d4d2889 SHA512 b76a5bd4fdbdc47c21b06681a8365f5d0baf7b121a88146b87a4a609d01b9008aeae070130c86be89586bfeff73b325bda4b4fa83dc150f3c5865e5d0f422995 diff --git a/sys-cluster/openmpi/openmpi-5.0.6.ebuild b/sys-cluster/openmpi/openmpi-5.0.6.ebuild new file mode 100644 index 000000000000..37b017e4483e --- /dev/null +++ b/sys-cluster/openmpi/openmpi-5.0.6.ebuild @@ -0,0 +1,142 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=fortran +inherit cuda flag-o-matic fortran-2 libtool + +MY_P=${P/-mpi} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="https://www.open-mpi.org" +SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" +S="${WORKDIR}/${MY_P}" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 -arm ~arm64 -ppc ~ppc64 -x86 ~amd64-linux" +IUSE="cma cuda fortran ipv6 peruse romio valgrind + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM}" + +REQUIRED_USE=" + openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) +" + +RDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + >=dev-libs/libevent-2.0.22:=[threads(+)] + >=sys-apps/hwloc-2.0.2:= + sys-cluster/pmix:= + sys-cluster/prrte:= + >=sys-libs/zlib-1.2.8-r1 + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= ) + openmpi_fabrics_ofed? ( sys-cluster/rdma-core ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) +" +DEPEND="${RDEPEND} + valgrind? ( dev-debug/valgrind )" + +pkg_setup() { + fortran-2_pkg_setup + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + elibtoolize + + # Avoid test which ends up looking at system mounts + echo "int main() { return 0; }" > test/util/opal_path_nfs.c || die + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die +} + +src_configure() { + # -Werror=lto-type-mismatch, -Werror=strict-aliasing + # The former even prevents successfully running ./configure, but both appear + # at `make` time as well. + # https://bugs.gentoo.org/913040 + # https://github.com/open-mpi/ompi/issues/12674 + # https://github.com/open-mpi/ompi/issues/12675 + append-flags -fno-strict-aliasing + filter-lto + + local myconf=( + --disable-mpi-java + # configure takes a looooong time, but upstream currently force + # constriants on caching: + # https://github.com/open-mpi/ompi/blob/9eec56222a5c98d13790c9ee74877f1562ac27e8/config/opal_config_subdir.m4#L118 + # so no --cache-dir for now. + --enable-mpi-fortran=$(usex fortran all no) + --enable-prte-prefix-by-default + --enable-pretty-print-stacktrace + + --sysconfdir="${EPREFIX}/etc/${PN}" + + --with-hwloc=external + --with-libevent=external + --with-prrte=external + + # Oiriginally supposed to be re-enabled for 5.0! + # See https://github.com/open-mpi/ompi/issues/9697#issuecomment-1003746357 + # and https://bugs.gentoo.org/828123#c14 + # + # However as of 5.0.3 the docs still say: + # + # As such, supporting data heterogeneity is a feature that has fallen + # into disrepair and is currently known to be broken in this release + # of Open MPI. + --disable-heterogeneous + + $(use_enable ipv6) + $(use_enable peruse) + $(use_enable romio io-romio) + + $(use_with cma) + + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) + $(use_with valgrind) + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) + $(use_with openmpi_rm_pbs tm) + $(use_with openmpi_rm_slurm slurm) + ) + + CONFIG_SHELL="${BROOT}"/bin/bash econf "${myconf[@]}" +} + +src_compile() { + emake V=1 +} + +src_test() { + emake -C test check +} + +src_install() { + default + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die +} diff --git a/sys-cluster/pmix/Manifest b/sys-cluster/pmix/Manifest index 447e7bce3a11..b48ed26d3844 100644 --- a/sys-cluster/pmix/Manifest +++ b/sys-cluster/pmix/Manifest @@ -1,7 +1,9 @@ DIST pmix-4.2.2.tar.bz2 1639600 BLAKE2B b5109900e52750656200e7bdbdc39d870a01f5afc1fb622663dfb2c9647b1735c23ece906064b34923977c522fb5a89afc03d81b7d115b26337934ab5bfe7ce3 SHA512 b7cb1e2079d517b32fc5d99012a7c4b161c1509b3ac1e0ba7e4697f2fe0917455927d06c86ecab5f2fa6073e1f058e86260d2115b6f8cc968a43a5675439f28d DIST pmix-4.2.8.tar.bz2 4800886 BLAKE2B 49c6c74f2a3d4826ade004e2ca69f8adafb26232b8fe92f5e620e11f93bde6a84a3611e737818564a3a5fd6fb75a4819250fa038e55aab46cf0a29c3f04e9f7e SHA512 2bc78cda82af24a9d7db204684e1778e0db183acc425095a91d46e4253209cec06542d497d5502c502b946b0ed1517f3b34f532d1107ccac1a09f2f267f14089 DIST pmix-5.0.3.tar.bz2 5148447 BLAKE2B 3d885f1beb901a443d3a746eae2f4a7d28926e367c5054d3cbd7f971531390800899c0d3130c36b3880292f586bc2ff357c239c9ec6e26dbcd35a4535737f51c SHA512 d7930426f29d957440ebfbe6a8321d3146373b8880d61c57e719345dd467dbe3bd1495cb4942ac0c450da0e28cdd56aed71b32c0bdd6571a8abab85bf334596b +DIST pmix-5.0.4.tar.bz2 5445399 BLAKE2B 95fd3fa528dfc9e0ab9aa0f081c2fa1d3e82fe31b4856bdbc1af136043839d872889305d653e2bae981a3b3e8f9e502bf4f021e4f39dc2a02d82cf3c170862a2 SHA512 3ed372b201ba47ebb202a615b7818bf263e586ba7f2d21d27377e15e886e79a6fb38cb6b46ec84433ad90c6ce810e135ef45f9ec7a9cf93eded87205e65a97d5 EBUILD pmix-4.2.2-r1.ebuild 736 BLAKE2B e614cdf2231ea72840c50afd989665436fcdc2145b6ce98027794637e206c4e307728d76320060960e3deb19dc1962b06dae229a963e747e5275e623f4c814ae SHA512 445009dd71a34c48dfc8b1cb5e8a476bc9dbeec9f9e91c6eab19677e6b295dae8308c934a947c9376eeb453f5d587c65994028479fdabe870ea67c5033d93e0e EBUILD pmix-4.2.8.ebuild 1025 BLAKE2B 780321a335637a5b1208627e24ea5c01039ca92e3e2f4a8288cd148f2d21052f285c70dc14043279c07eaff7017b3b3891c7d452cf5e2a3095934390be69bfe3 SHA512 19d5b0e06f1aeb400dbfc44baf089b2d43cd04b9f489f3c9f22f6e1a8cc30647928885c175344562a3ef8529480e0d4dc11ca99728899a64962212cc748f0871 EBUILD pmix-5.0.3.ebuild 1218 BLAKE2B 75d64a8e525a2e154ac461af11891d236fea47dd0b8cdb3499b23d27ba2ad53f21c0ca00cbfbbd56e9fdb1a7c51e92849f5537ec14ab7c9ff3ed7ec7da3b7a8c SHA512 dfd9361c1b858c2dae46cb8959a80f44119fb4a445665056cc1f9139afefd56f6dee2e30d52bac01b824b2be03690c5ec80428942c40dcc7bb76627b0748088b +EBUILD pmix-5.0.4.ebuild 1218 BLAKE2B 75d64a8e525a2e154ac461af11891d236fea47dd0b8cdb3499b23d27ba2ad53f21c0ca00cbfbbd56e9fdb1a7c51e92849f5537ec14ab7c9ff3ed7ec7da3b7a8c SHA512 dfd9361c1b858c2dae46cb8959a80f44119fb4a445665056cc1f9139afefd56f6dee2e30d52bac01b824b2be03690c5ec80428942c40dcc7bb76627b0748088b MISC metadata.xml 575 BLAKE2B 67bd77519d1b4461d8097c85d414427da4a550f3b6863684bcbd647c88ad1fbfe7957379c7adceca3938012a23de3e5967bd137159f65790319553e9ff00c63e SHA512 19d16bd6c08878ba2b61220dde3e86ce8db6e8d07f36e295f04679b5a6ef81dc8674d863e636f12382a96de5a9c0266a7dcb8ac24a669229ab44164b64c0b4c7 diff --git a/sys-cluster/pmix/pmix-5.0.4.ebuild b/sys-cluster/pmix/pmix-5.0.4.ebuild new file mode 100644 index 000000000000..b37a67a20d75 --- /dev/null +++ b/sys-cluster/pmix/pmix-5.0.4.ebuild @@ -0,0 +1,58 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit flag-o-matic libtool + +DESCRIPTION="The Process Management Interface (PMI) Exascale" +HOMEPAGE="https://openpmix.github.io/" +SRC_URI="https://github.com/openpmix/openpmix/releases/download/v${PV}/${P}.tar.bz2" + +LICENSE="BSD" +SLOT="0" +# No support for 32-bit systems as of 4.2.8 (https://github.com/open-mpi/ompi/issues/11248) +KEYWORDS="~amd64 ~arm64 ~ppc64 -x86 ~amd64-linux" +IUSE="debug +munge pmi" + +RDEPEND=" + dev-libs/libevent:= + sys-apps/hwloc:= + sys-cluster/ucx + sys-libs/zlib:= + munge? ( sys-auth/munge ) + pmi? ( !sys-cluster/slurm ) +" +DEPEND="${RDEPEND}" + +src_prepare() { + default + elibtoolize +} + +src_configure() { + # -Werror=lto-type-mismatch + # https://github.com/openpmix/openpmix/issues/3350 + filter-lto + + local myeconfargs=( + # These are alternatives. We must use the one in DEPEND, and also + # prevent automagic fallbacks. + --with-libevent + --without-libev + + $(use_enable debug) + $(use_with munge) + ) + + econf "${myeconfargs[@]}" +} + +src_install() { + default + + find "${ED}" -name '*.la' -delete || die + + # bug #884765 + mv "${ED}"/usr/bin/pquery "${ED}"/usr/bin/pmix-pquery || die +} diff --git a/sys-cluster/prrte/Manifest b/sys-cluster/prrte/Manifest index c55234748308..10bd64705446 100644 --- a/sys-cluster/prrte/Manifest +++ b/sys-cluster/prrte/Manifest @@ -1,3 +1,5 @@ DIST prrte-3.0.6.tar.gz 5976755 BLAKE2B 62cff51ebb7e72c32a237eb36db925f5bf5811cf5f409619128fa8ef490d3ba9e6ba4a1701edd21486878974088ff17645c98dab12904abd48c4a4b50453f807 SHA512 f7d3a1bedc0029fcb0e4e906a099d1de07b171805f0cc8d6e443826b8c321e3d5e7fa80867d8ab9ae1f628446a1a8f663231d8b67e243650582225805adc6e9d +DIST prrte-3.0.7.tar.gz 5592294 BLAKE2B e12133f2d6515620bce639faa1b439947a5fd50bfdbf5d0c855e9ce138b82da452776bb92a326dcfe1b2b43be8b31dade528f0230b40ad5b38586ca6c0ee5c42 SHA512 34b032ba461d095d549af0580fa7366290cdb54c22056dad71a24c85a6dcbd3614f69bc01892a8b2505f406ae728f6d7520a0f03a597ee0ab0208091d5319e18 EBUILD prrte-3.0.6.ebuild 879 BLAKE2B 374826cd5e7471e87a8287210f7ae8fb1c4c0cbff98b9473d0d5cde3dc63fa9a1859dd97e98f5bc6971b1d6cf1d0111817aba83f372f80331fde169069d016e6 SHA512 e229bfbdeff6aae7a9fc428e89201492d4206127a8c0e24e91c452cdd0608def3178e4a1729a521fb02098040ce640babd5e7841a227cb9b20388885051445e4 +EBUILD prrte-3.0.7.ebuild 879 BLAKE2B 374826cd5e7471e87a8287210f7ae8fb1c4c0cbff98b9473d0d5cde3dc63fa9a1859dd97e98f5bc6971b1d6cf1d0111817aba83f372f80331fde169069d016e6 SHA512 e229bfbdeff6aae7a9fc428e89201492d4206127a8c0e24e91c452cdd0608def3178e4a1729a521fb02098040ce640babd5e7841a227cb9b20388885051445e4 MISC metadata.xml 337 BLAKE2B 91c8edbbf432d72f02c4e8901c2ae9148f727b024098d3497bfb3c631c359b6d790c177ffc600248bbd3955ebfe8e7ff74c0c4960507574d52edc10b2a9935eb SHA512 cafdf860ef4a40f97eafca4431a3418247b3d424307c4c2ed1c573c024a89def4072b375faa08311f9f62c836bfd29a16f46a327d5cc7b563a677fe62acb605f diff --git a/sys-cluster/prrte/prrte-3.0.7.ebuild b/sys-cluster/prrte/prrte-3.0.7.ebuild new file mode 100644 index 000000000000..6790ea5231fa --- /dev/null +++ b/sys-cluster/prrte/prrte-3.0.7.ebuild @@ -0,0 +1,45 @@ +# Copyright 2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit flag-o-matic libtool + +DESCRIPTION="PMIx Reference RunTime Environment" +HOMEPAGE="https://openpmix.github.io/" +SRC_URI="https://github.com/openpmix/prrte/releases/download/v${PV}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0/$(ver_cut 1)" +KEYWORDS="~amd64 ~arm64 ~ppc64" + +DEPEND=" + dev-libs/libevent:= + sys-apps/hwloc:= + >=sys-cluster/pmix-4.2.4 +" +RDEPEND="${DEPEND}" + +# There is no testsuite at least today. +RESTRICT="test" + +src_prepare() { + default + elibtoolize +} + +src_configure() { + # -Werror=lto-type-mismatch + # + # Same issue as its companion project sys-cluster/pmix, and logically + # solvable in tandem (or never). + # https://github.com/openpmix/openpmix/issues/3350 + filter-lto + + econf +} + +src_install() { + default + find "${ED}" -type f -name '*.la' -delete || die +} -- cgit v1.2.3