From ebb07c94f800907e02d2a6b92c1bc757b2f86f49 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Mon, 18 Mar 2024 12:50:07 +0000 Subject: gentoo auto-resync : 18:03:2024 - 12:50:07 --- sci-physics/Manifest.gz | Bin 4209 -> 4209 bytes sci-physics/fastjet-contrib/Manifest | 2 + .../fastjet-contrib/fastjet-contrib-1.053.ebuild | 54 ++++++++++ sci-physics/fastjet/Manifest | 2 + sci-physics/fastjet/fastjet-3.4.2.ebuild | 84 ++++++++++++++++ sci-physics/yoda/Manifest | 5 + sci-physics/yoda/files/yoda-1.9.9-configure.patch | 56 +++++++++++ sci-physics/yoda/yoda-1.9.10.ebuild | 112 +++++++++++++++++++++ sci-physics/yoda/yoda-1.9.9.ebuild | 112 +++++++++++++++++++++ 9 files changed, 427 insertions(+) create mode 100644 sci-physics/fastjet-contrib/fastjet-contrib-1.053.ebuild create mode 100644 sci-physics/fastjet/fastjet-3.4.2.ebuild create mode 100644 sci-physics/yoda/files/yoda-1.9.9-configure.patch create mode 100644 sci-physics/yoda/yoda-1.9.10.ebuild create mode 100644 sci-physics/yoda/yoda-1.9.9.ebuild (limited to 'sci-physics') diff --git a/sci-physics/Manifest.gz b/sci-physics/Manifest.gz index ad193414438f..e9fcdd222b70 100644 Binary files a/sci-physics/Manifest.gz and b/sci-physics/Manifest.gz differ diff --git a/sci-physics/fastjet-contrib/Manifest b/sci-physics/fastjet-contrib/Manifest index c8f52ea4c4f9..64052006d7e6 100644 --- a/sci-physics/fastjet-contrib/Manifest +++ b/sci-physics/fastjet-contrib/Manifest @@ -1,7 +1,9 @@ AUX fastjet-contrib-1.049-ar.patch 5345 BLAKE2B d372187f781da47b128c5cdde8909da4c5b1db7ffb3dede72248db9238efd7e399c292a6a2f7d93d879da1120b9ec860076ee3402ed02f6bf7b002e4c962f01a SHA512 12ba683b4f302b2563d036949161a55c3efd759e27519b757f257f5797d48b6a11c34084580b3669988d393c04574ab1f22af0e2ceb4b92d3499fc53831512e5 AUX fastjet-contrib-1.049-musl.patch 416 BLAKE2B f781792afa8e5c7a979225c649df00e10d720d9576a53d68bbb359371cd035776a80a34f405d76707254ec2202c5cda557839e1dbe5478aba3464eee35f2fd7e SHA512 d17b3273ba09a4be6c15f451ec9b8bffb028115ba9e67c6a61b505a31ae2577ee2038c40d57e6b986b0b2f433c9e2eb623cea1f600147e5af7c3831a8b85e4a7 AUX fastjet-contrib-1.049-soname.patch 667 BLAKE2B 14fd4ad56300414fc13b4ddd89e59ee064f1531e2217e0c5ca35e6a1567f9c18e88c8f06104dd0a3f28486fa86ecd3ebf495520f57d0fc12b0934e1004b4b2bb SHA512 5dd0999f6847f6bfdeabb0432bfe639f5f5d42171e21711959fe6155f73ec3e2dd6cdc2156345ba3cec2534f48c9977337372d15a04ab1e86697dbd7affb9fdd +DIST fastjet-contrib-1.053.tar.gz 912109 BLAKE2B b195c415163d9ebf8e48d2516ea44014f0f4b112307a86d536e82d62121b0e22d8c862468fddcc8570eea6137c1d757586941af80112459a528e261764a0fb96 SHA512 b8888d30abaead7ec084d551d05dbd53f5a03e226fd58ec1e4c236cb022868c5134a4199dde262f18334628f4b58d532bd0e7955e81d8d964a985646d376878b DIST fjcontrib-1.049.tar.gz 850931 BLAKE2B ed80c231220794cda36fb0cbbad225eb8d741f2de5558878f17d1774e16e3046d2af4b0cb895d5fc897f382c36f50def0b3ecb0fba06010347752e0a59ee402f SHA512 21dc066cc8f2667f41377924bad6c3df625fa73d16b6bc3dd49ff76e6e15abbfeac0317850699e7047a7c2445c4a94a67d0f37119922163eae8bf77a56edd9e6 EBUILD fastjet-contrib-1.049-r1.ebuild 1140 BLAKE2B 92961a7f96b6160647aa950e9f42d1543e307a017308b5692c971e42f69fc781c8bb005f8dbae1dddac7dfb2478160e82356bd82bbe03fb01ae2f4df3ff35eaa SHA512 9ee911ed8c7acd3f33ca9997948bea8ae2446080b726d31cca83d9c2bb18a631cf80e5d3098dc0ce9053f1dd0a82eca91377bc05474d93283abd2bde09800f60 EBUILD fastjet-contrib-1.049-r2.ebuild 1176 BLAKE2B a1dff8e3cf2b57a58ea07abf421f5e14b78ee1f46b1ba6893820af9e7a7a99ec0c1fa270b53782134cbc5f4c1359f7282c243dc983bbd31e8338900ff2ffa3e8 SHA512 9d0f628b55a4756219c6381d1816c42fc4382bd9a80fa2a4a600d82b2e58f381b32b561de4f2ed07360253431406b5d53ab01fc2a1a3eb7476bb319d39b7220a +EBUILD fastjet-contrib-1.053.ebuild 1269 BLAKE2B 634dd077c79c50d0aec03936fe44946da5f754a6fe0679059e066fbb557f54367fa7161831e55e898eef155223719d792ebd9fc2423cd5b9a461166add8988ca SHA512 77fec427d37fdd693885672917ea0f03b3935159f16594ff457538c66dd0a7f68183cc1bf36435998ff7ec9367549813690d1d459be791ba5978a15f1f60251d MISC metadata.xml 702 BLAKE2B 14570ef3a3740d253725da436f3b496c479288aaa7c32c3e6fe16339f13b58d91b067a00e482b1ede080c5a1f735bdee9ce80ea3c234878caa5bc60a2cf65f03 SHA512 dc1e158453b8517eea9c2dc95f4caf5f6352498b6cbce29cd0d6f207548e877403a6a21471b69db48813a2cb327b172865e49c813ea3b6b0780f8ada6465a3c0 diff --git a/sci-physics/fastjet-contrib/fastjet-contrib-1.053.ebuild b/sci-physics/fastjet-contrib/fastjet-contrib-1.053.ebuild new file mode 100644 index 000000000000..f4141ddfd6d1 --- /dev/null +++ b/sci-physics/fastjet-contrib/fastjet-contrib-1.053.ebuild @@ -0,0 +1,54 @@ +# Copyright 2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit toolchain-funcs + +MY_PN=fjcontrib +MY_P=${MY_PN}-${PV} + +DESCRIPTION="3rd party extensions of FastJet." +HOMEPAGE="https://fastjet.hepforge.org/contrib/" +SRC_URI="https://fastjet.hepforge.org/contrib/downloads/${MY_P}.tar.gz -> ${P}.tar.gz" +S="${WORKDIR}/${MY_P}" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64" + +DEPEND=">=sci-physics/fastjet-3.4.0" +RDEPEND="${DEPEND}" + +PATCHES=( + "${FILESDIR}"/${PN}-1.049-soname.patch + "${FILESDIR}"/${PN}-1.049-ar.patch + "${FILESDIR}"/${PN}-1.049-musl.patch +) + +src_configure() { + tc-export CXX AR RANLIB + ./configure \ + --prefix="${ESYSROOT}/usr" \ + --fastjet-config="${ESYSROOT}/usr/bin/fastjet-config" \ + RANLIB="${RANLIB}" \ + AR="${AR}" \ + CXX="${CXX}" \ + CFLAGS="${CFLAGS}" \ + CXXFLAGS="${CXXFLAGS}" \ + FFLAGS="${FFLAGS}" \ + LDFLAGS="${LDFLAGS}" || die +} + +src_compile() { + emake + emake fragile-shared +} + +src_install() { + emake install PREFIX="${ED}/usr" + dolib.so libfastjetcontribfragile.so + # The name used for requesting this library varies + dosym libfastjetcontribfragile.so /usr/$(get_libdir)/libfastjetcontribfragile.so.0 + dosym libfastjetcontribfragile.so /usr/$(get_libdir)/fastjetcontribfragile.so.0 +} diff --git a/sci-physics/fastjet/Manifest b/sci-physics/fastjet/Manifest index a07d67a6f92d..800b2971a8d7 100644 --- a/sci-physics/fastjet/Manifest +++ b/sci-physics/fastjet/Manifest @@ -1,5 +1,7 @@ AUX fastjet-3.4.0-gfortran.patch 460 BLAKE2B 59fc23a0326274363bdaa325b279c3b798726b1d1e68ce24d591d74ece325533d04bb430b8d3cd9afe9041bb6ea35e1013836634c334984a2b38df53691d75e6 SHA512 c687213cf01ce3d46bbe17db48581dfe7980137d568e0cfc4c1b0665b189cfb64b2feba50763ae511688f10c4eb08e0c43260f76238b5e4c9ea0f00b281e157c AUX fastjet-3.4.0-system-siscone.patch 3905 BLAKE2B dbd08874af57cf611b40d4a0ec8c8acff5acff5a6a0959e45b486926a3e50e5ff2c4ac9992161e11666cf09ca52a189c51cb192f907c97b2d8b60c96f5a90fed SHA512 448171e01cc608b0b8e84d1a1bb4e2a146e81fefd6b660e149d181b5c6fdd71f8317e92fe301d47e359819cb03a757034d66a2ab5be96cc2b2d7fc500de6afcc DIST fastjet-3.4.0.tar.gz 2959127 BLAKE2B c99e89ee5cea3fd4e3edebdfebb50efd3c58e7ab15215a384c44120ac930882bd2d4e446b61977fe65dcc49056b958c6510abb7c5889024ae49776b1955bd023 SHA512 af8aeb6197f6bd82ec5f127647f49cd5d455c20e614c23d928b850fc97bc12c70cf6e3b09f1bb0308c2a080fcd4fa13416eea0195695060efaa0e400a687d7b7 +DIST fastjet-3.4.2.tar.gz 2973605 BLAKE2B f51b26fdb2611084679a79905c6da460edcf3ad3139bdb2384fe95600e474f4bdb028b24c43456e018c5fb9535491c929d1ec2032d184536efd6b2ef16d54ae1 SHA512 e7702699e67ba5af73f1fe931fe5f67b9f52bb2f0cfdc57dbacf408741e6271ed160503fe6142c92621287df49b441ce7562af589353b199fed09a4c4c839f3f EBUILD fastjet-3.4.0-r1.ebuild 1725 BLAKE2B 74e7f6f3f5227f5da9f14a51fead044f38a9c8cad0301b8f975366c9110bf32c9b00ae362c3b01a2625be50945883f3691fe7429fe8382e0df27871d20ba7616 SHA512 29f965ddb89b1dfbb5d698105426f75ec35d3d7c40e7751f08b73094db72ee1ad6f61f41a3b9fe4b5846f91ce1b1fc69f71936443cffd1d2830c5ea83b966e3c +EBUILD fastjet-3.4.2.ebuild 1911 BLAKE2B 777d04f8f1038edfc1e60bf7b24f88fbf9e3c9d3ba4ec14e70cd8e8a41662a4911293b65604ead8e406db834538822324be596bad77ab4f94cbf5a8a386ccbb9 SHA512 399c5a9d7a3cf298bb014790e5754664b620c0dc2f00feffc6fece7526475658605e53db0146ee97cd19311040632219df7349f83e69a1ec332fb39e8208113a MISC metadata.xml 847 BLAKE2B e83be614f0f62c0134590b689846e3fd481d49268bc45d2cd0a8fcf4628d56551a76336843da0c596e992dd0aefa829de07cb0877d3bba8aa1123c7f9f54d062 SHA512 b9fc075c1fb0cd8da6f44ddc2ce55b4f3492bf23a6ec3a56865559afdfbd2a1d79bcd07d34974c5f44e96edca08830c057852fa85a7ab88b8b2f784c4a34519f diff --git a/sci-physics/fastjet/fastjet-3.4.2.ebuild b/sci-physics/fastjet/fastjet-3.4.2.ebuild new file mode 100644 index 000000000000..b090ff59f0e8 --- /dev/null +++ b/sci-physics/fastjet/fastjet-3.4.2.ebuild @@ -0,0 +1,84 @@ +# Copyright 2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=plugins +PYTHON_COMPAT=( python3_{10..12} ) +DOCS_BUILDER="doxygen" +DOCS_DEPEND=" + media-gfx/graphviz + media-libs/freetype + virtual/latex-base +" + +inherit autotools docs flag-o-matic fortran-2 python-single-r1 + +DESCRIPTION="A software package for jet finding in pp and e+e- collisions" +HOMEPAGE="https://fastjet.fr/" +SRC_URI="https://fastjet.fr/repo/${P}.tar.gz" + +LICENSE="GPL-2+" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="cgal examples python +plugins" +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +# cgal is header-only in version 5.4 and up. We need to use the +# special --enable-cgal-header-only argument to use these versions. +DEPEND=" + cgal? ( >=sci-mathematics/cgal-5.4:=[shared(+)] ) + plugins? ( sci-physics/siscone:= ) + python? ( ${PYTHON_DEPS} ) +" +RDEPEND="${DEPEND}" +BDEPEND="app-shells/bash" + +PATCHES=( + "${FILESDIR}"/${PN}-3.4.0-system-siscone.patch + "${FILESDIR}"/${PN}-3.4.0-gfortran.patch +) + +pkg_setup() { + use python && python-single-r1_pkg_setup +} + +src_prepare() { + default + eautoreconf +} + +src_configure() { + use cgal && \ + has_version 'sci-mathematics/cgal[gmp]' && append-libs -lgmp + # only bash compatible + sed -i 's#/bin/sh#/bin/bash#g' ./configure || die + econf \ + $(use_enable cgal cgal-header-only) \ + $(use_enable plugins allplugins) \ + $(use_enable plugins allcxxplugins) \ + --enable-shared \ + --enable-static=no \ + --disable-static \ + --disable-auto-ptr \ + $(use_enable python pyext) +} + +src_compile() { + default + docs_compile +} + +src_install() { + default + use python && python_optimize + if use examples; then + emake -C example maintainer-clean + find example -iname 'makefile*' -delete || die + + docinto examples + dodoc -r example/. + docompress -x /usr/share/doc/${PF}/examples + fi + find "${ED}" -name '*.la' -delete || die +} diff --git a/sci-physics/yoda/Manifest b/sci-physics/yoda/Manifest index 82dbabef9808..93eedd3680db 100644 --- a/sci-physics/yoda/Manifest +++ b/sci-physics/yoda/Manifest @@ -1,9 +1,14 @@ +AUX yoda-1.9.9-configure.patch 1607 BLAKE2B 7738d68c938b76ffffa83a991da8aa6451439e6ebc526b0f965d2f881b966a90b071652c1d956a3c8323737915a6174d5867030f145d4242ecbb9ee078e53953 SHA512 b0d9e546563c80c5e3f67a42c2fce0a8e733db120d527967fe7904d232d9fb885b9955681a6b923815ad0cc5c1f217c42f9358eb9f4b2e3b5af455d39da00c99 DIST YODA-1.9.0.tar.bz2 1061105 BLAKE2B 70d68d31456747fcb14e27585aae245930061b5135b8a96c8ff3fe0375175d00a1c2d24a6c1ca3f18fc8464e610ef6287184f3990e12ff3fb108def600e34189 SHA512 eb82f1df832c2124dd81e07c06f165ddf13c4c4b70fcd0113f85045e22085d82751325bc57bfbd167649580980d98a15b666de56dada639160f24682b58b2f71 +DIST YODA-1.9.10.tar.bz2 1278729 BLAKE2B f6ae9b579d79b6be62e9644e327f0b449882c0f1a0efaac09ac97eae90a2ced10bf2b13447d75390552b3e4d8c128e7a33184bf8b2d308236f828e611df6d7a4 SHA512 54a455a1b2772ea3201477d4dddcf0c92c85bfee8825d8726d62331ebacb37fc8d1f6e02cdfe592722f2a747a46786d2bdb3c36cc982794a30b25e718d32e998 DIST YODA-1.9.5.tar.bz2 1077442 BLAKE2B 010ab725c57dfab8160e0304d461dc44c140d1ce234f3b70834ee58b8f269159529122095a94e6b79ef752612a6659a17e1874fda2941cfbcec1f53802916b6a SHA512 46e30b33d369f5d28ec228b71eaa298f3010cc06fe568785c74bbaf3d7468c26738cc2ee40da9bcc54d978f394187a2ee9289197283c86a3358583a3c0ecd247 DIST YODA-1.9.6.tar.bz2 1069530 BLAKE2B 23d782723c5b2429e9e9a70abe8dbf3d58a2204437a46b6e2e196cacc9b6ce55464d5600dd53492f43801866fc7da0e82d1e765cc04c493f40b2da95413aba25 SHA512 2433f2d685ccc97aa41e5f44e0c7ca560de01e3b746f2e4837ee6259cd142106e9aa0066aaa106e5298f8d4d9df3a09f5a2d058d6b1593792c9afe06b65d1a22 DIST YODA-1.9.7.tar.bz2 1084794 BLAKE2B 86a1d061c6c16ceb994878d734642fe2be18dcce4391e7f8cb57df27b5944ba4edc6573915b150993c921a4a7b5eda2b3f598b7984466f6706348ca137e4981a SHA512 923e51a5783638304841bdc7aad6351c109c1806ce3f87d1ed9d965c4c95179bb1e416c9db77e39cd8f81417d08a7668cdde4f56cd893ce528b7cf9fe0e67c01 +DIST YODA-1.9.9.tar.bz2 1278231 BLAKE2B 74b759d5e152a28359ab244690a0c8e8cf10d2eb130bbf4017d602a98b28264b4f9f05842b6ef261b990e62908db6cad490aa85dde54cae3dc948eaa5f9f8440 SHA512 76e80891878712c6576cc13013b332dc48711c9b19ba1257a6c2128bdde5eb483c61f9a7d7f7946b8f0c44fd3940afe699c8dd6a45083917bf8f30351d9ce191 EBUILD yoda-1.9.0.ebuild 843 BLAKE2B 94946e19f1b8f36dd4151592207d99ccf0c0d4a46e29323d3cce470dcfcb2f07fe050ce712726a12394f4388de43c5af1ccab56cbf8d4d2f861725d70c8c1634 SHA512 8aa5189d75b21b1d88b56952557c1be48ffa9b81e2ba0d292a99fbbab47f792bbcb89454c055d0c0319fe31b43243a369e6b0d88fdab792e36f15d401d49a0d5 +EBUILD yoda-1.9.10.ebuild 2342 BLAKE2B 6f96d2a8cc866ed5d409cd5614a4ea20f2d10700d24a81d51fdcbce8056978b1faa95d8b319287cc24585dd1256d58cb560f9748fe9595df2abd58194a2af4bb SHA512 6e4d30b90b0965572364c763d1c9d838b6ff884221dc61a7542e711727ddf1a80044532daf9b345747672028caf687436054a739162e5d6b88cdbed9a5d179cc EBUILD yoda-1.9.5.ebuild 884 BLAKE2B 04511d2040cc8c22d994d51653b7c0f3bc9bb38097eaa770cf28f2dcc2a365a770e3bcbc89840415ab9e13d6975f9cca474b292dd47f24f3ff917259aa0340cf SHA512 17bc971c8b57cdb7dd0823f74a5dcc24206e2ebb2c5e93e445b1babfa459c18803944a516fa01bd20cd55003710d50192a51b94721933dd26098ffe23a6194da EBUILD yoda-1.9.6.ebuild 1246 BLAKE2B f5a104613618e6506a05b1e943964d03adb43b60e3caae2cc170162b2f34a4849c8629e0b021d8212343368d552aca97fc25056c24e11623eff5307a83b430d6 SHA512 b8fa53023b0351c52d072070e0c5b1a6078ecd6f8be4372f5e85b322688b6bf04f7c987bfbf63505ad10bdb8f38ad7cd3ab9a75c16e9954ca751704256356f9b EBUILD yoda-1.9.7.ebuild 1246 BLAKE2B ba358ba36dd8906922dd78e3fd0e905dd58595d5f7a5e1422bd5b4a29dfbb1d13ea336be5b8484291a7882c3daf7edbf37efbe98830f3dbb1937a427ad0bdadc SHA512 6ed1f48251b3e185e68fb93501e9a6dd4e3c64b0c0c52a74feb8605d9f5f84e78220c2ebd6aa345debc1b6ed6475f7268ec2fabfde2a81b70b81302f87976caa +EBUILD yoda-1.9.9.ebuild 2335 BLAKE2B 18b944660e14da1c43113ea437fb8a358b8f67b8d9308146e1d806d6d6daf8060a4f9fc2536d12c51408b8a7568a358d827bffbf4997d1f910249cc09dc799f3 SHA512 451f6a59fdb98528aac876f6ffeab1530144e2d7748973ff39fe6c733db8ccd54d52f3de10e68f1645e634b242fb4bdff50e769777dcae400cec5b1c5924e9b3 MISC metadata.xml 660 BLAKE2B 7bc7ad4089af06b0a7b80028e99a551c8adf18c7066f4b9743e74bbcdb8b831b47917faa98f6183e6fd70856f385c2a45a84366cdb5b9f25ec3881efecb4a723 SHA512 64002092f2032d225f2bd4dcc4668c00cc23b9e60b58052b93a0618794f4e17104ab11a0982428ad956ca6b894e93e230523b52918bc9d41d2c01d22abe18e90 diff --git a/sci-physics/yoda/files/yoda-1.9.9-configure.patch b/sci-physics/yoda/files/yoda-1.9.9-configure.patch new file mode 100644 index 000000000000..47872f64097a --- /dev/null +++ b/sci-physics/yoda/files/yoda-1.9.9-configure.patch @@ -0,0 +1,56 @@ +From a9267acfaadf93cd4fbe6d5a91e766bfb3bf154a Mon Sep 17 00:00:00 2001 +From: Alexander Puck Neuwirth +Date: Fri, 15 Mar 2024 20:36:32 +0000 +Subject: [PATCH 1/2] Fix configure failure for uncommon shells + +--- + configure.ac | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + +diff --git a/configure.ac b/configure.ac +index 86de6b35..e9db8ee7 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -131,11 +131,11 @@ if test x$enable_pyext = xyes; then + enable_pyext=no + fi + fi +-AM_CONDITIONAL(ENABLE_PYEXT, [test x$enable_pyext == xyes]) ++AM_CONDITIONAL(ENABLE_PYEXT, [test x$enable_pyext = xyes]) + + + ## Cython checks +-if test x$enable_pyext == xyes; then ++if test x$enable_pyext = xyes; then + AM_CHECK_CYTHON([0.24], [:], [:]) + if test x$CYTHON_FOUND = xyes; then + AC_PATH_PROGS(CYTHON, [$CYTHON cython-$PYTHON_VERSION cython$PYTHON_VERSION cython-$PYTHON_MAJOR_VERSION cython$PYTHON_MAJOR_VERSION cython]) +-- +GitLab + + +From 62f321a54d83a3937d5061759ca04b97aa8e2616 Mon Sep 17 00:00:00 2001 +From: Alexander Puck Neuwirth +Date: Fri, 15 Mar 2024 20:41:19 +0000 +Subject: [PATCH 2/2] Update configure.ac + +--- + configure.ac | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/configure.ac b/configure.ac +index e9db8ee7..6a8a34cb 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -194,7 +194,7 @@ AC_CONFIG_FILES([yodaenv.sh yoda.pc]) + + AC_OUTPUT + +-if test x$enable_pyext == xyes; then ++if test x$enable_pyext = xyes; then + cat <