From 41ba6a36cf63678ca63fdd9788e84e3e032dc4ba Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Wed, 23 Aug 2023 15:49:20 +0100 Subject: gentoo auto-resync : 23:08:2023 - 15:49:20 --- sci-mathematics/Manifest.gz | Bin 19007 -> 19007 bytes sci-mathematics/normaliz/Manifest | 4 +- sci-mathematics/normaliz/normaliz-3.10.0.ebuild | 73 ------- sci-mathematics/normaliz/normaliz-3.10.1.ebuild | 73 +++++++ sci-mathematics/octave/Manifest | 2 + sci-mathematics/octave/octave-8.3.0.ebuild | 241 ++++++++++++++++++++++++ 6 files changed, 318 insertions(+), 75 deletions(-) delete mode 100644 sci-mathematics/normaliz/normaliz-3.10.0.ebuild create mode 100644 sci-mathematics/normaliz/normaliz-3.10.1.ebuild create mode 100644 sci-mathematics/octave/octave-8.3.0.ebuild (limited to 'sci-mathematics') diff --git a/sci-mathematics/Manifest.gz b/sci-mathematics/Manifest.gz index b63f9c8d3d82..d935a00c6109 100644 Binary files a/sci-mathematics/Manifest.gz and b/sci-mathematics/Manifest.gz differ diff --git a/sci-mathematics/normaliz/Manifest b/sci-mathematics/normaliz/Manifest index 70271ae77c13..d7329e4cf16d 100644 --- a/sci-mathematics/normaliz/Manifest +++ b/sci-mathematics/normaliz/Manifest @@ -1,5 +1,5 @@ -DIST normaliz-3.10.0.tar.gz 5177794 BLAKE2B ef2ed089da0bf7b286f477837d8793466c1b030ea0f321cd74e910461a6bd28705f971d1b987ef59aa783311dc247e2838d5acf850cb1948e429c98e1ca440f0 SHA512 febc43f846607dcfca8bcf462e8ccf655e2e6e10dcb2741412c08489fc9b2e99410306dc4b078084bfe73e41113849b201e6f7f5a8e2ae07508ebf1c043f95a3 +DIST normaliz-3.10.1.tar.gz 6795274 BLAKE2B 49bef9b5826daa4e3f483a7f5e67c3e5770ad11eaae85524f3ad2e81853eda033cffd28516efb1b0664a8d2ea971f101cf7880e465b0cf3182035a7a12ea9705 SHA512 363ee2c9388d0c88181742399be1d9bd21b27394a306ce095382f60fb8544a39feea7d10ce2bce1edf0ba6407c9bd1becc237ef1a58c7509e84e1b9f2712ba0c DIST normaliz-3.9.3.tar.gz 4946498 BLAKE2B 3faff64fda86216ee11b0f55ba1341d70988472f65eedafe5b52bf6b05abd817add2dbab45144de0a43d02c501caf3c4a89d66c2b2d621b81188a2a5100d158f SHA512 5d6866cc35835c196d22d6b4b0d5f0e3e2e00f772553115fbbabd8415b20388cf367cf9a282904a72c03c2ef482b804f7009d67e3334add4fc37f3bab675da6c -EBUILD normaliz-3.10.0.ebuild 1681 BLAKE2B cb3d172f736136d5706ee0e3b9b8ff162c4e3ec4ad3dede67b2d275dd340ba0d361c47bb4bdda66d7fbfac01372fd4f6e79a029435d75e41a27f52e925216c61 SHA512 91ef2964ace54fdcf9fa9da2c63b11669cf3403dc08678b44ba64f75852fee6186ae95cd3682c8019e6a2b525398a20737140feeb7ebff7a189a0e3915a53ad2 +EBUILD normaliz-3.10.1.ebuild 1682 BLAKE2B 0e6b93f73f4e99c40d41c05921e1b97ab75b3274c44a253ef7a4035c2a100cf7cb43475adc657ce7885c15c77d32a18056616e203ee9056fcc99d592c6431050 SHA512 7c66392226695ac721baa46834619c9589f4c802806efe7a47131e2deaf0739989b553d8196cada351abcdbd870dae3ef87561c58bafae92ee40922889d958a1 EBUILD normaliz-3.9.3.ebuild 1600 BLAKE2B ecbba2146925c8a4facb6fccc88f40db9ad024f7413f302c61543670ca64706ffdadad5f523e0b7994602f850bfd7698abfda5983ffd5e8fe7af148bb52d10a0 SHA512 187f7b0e4264be7289e0677543001104630449913b264889e3ac8855e87b3f2bc63cfbb4b912b7ecc01ab645a889c2c94d1dfe8feb0d3222a7bdec22a4b657c2 MISC metadata.xml 823 BLAKE2B e6ac647e395713b5589b2dd6655bdde020fdb4113067f83d503497e0e5ec916b04d2742227ea16f1dda4551c1275b2d0e684e3dab4cb331fc4d42597ea2bc004 SHA512 3f242ea780a29900dfda6b7a0372a87d38ebd11184e1eed976653bc3712e54c2cf5897f07c7f2d0aa50a1af6364fb797c2c4e78cb9c3fa4344370cab4dbe4abb diff --git a/sci-mathematics/normaliz/normaliz-3.10.0.ebuild b/sci-mathematics/normaliz/normaliz-3.10.0.ebuild deleted file mode 100644 index 055e1f8973ca..000000000000 --- a/sci-mathematics/normaliz/normaliz-3.10.0.ebuild +++ /dev/null @@ -1,73 +0,0 @@ -# Copyright 1999-2023 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -inherit autotools toolchain-funcs - -DESCRIPTION="Tool for computations in affine monoids and more" -HOMEPAGE="https://www.normaliz.uni-osnabrueck.de/" -SRC_URI="https://github.com/Normaliz/Normaliz/releases/download/${PV}/${P}.tar.gz" - -LICENSE="GPL-3" -SLOT="0/3" -KEYWORDS="~amd64 ~arm ~riscv ~x86 ~amd64-linux ~x86-linux" -IUSE="doc extras nauty openmp" - -RDEPEND=" - dev-libs/gmp:=[cxx(+)] - nauty? ( sci-mathematics/nauty ) -" -DEPEND=" - ${RDEPEND} - dev-libs/boost -" -# Only a boost header is needed -> not RDEPEND - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -pkg_setup() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -src_prepare() { - # Fix C standard compliance. - default - eautoreconf -} - -src_configure() { - # flint (and arb, which doesn't make an appearance in ./configure --help) - # is somehow connected to e-antic, which we do not yet package. Likewise - # we have no packages for cocoalib or hashlibrary. - econf \ - $(use_enable openmp) \ - $(use_with nauty) \ - --without-cocoalib \ - --without-hashlibrary \ - --without-flint \ - --without-e-antic \ - --disable-static -} - -src_compile() { - # Clobber the default "AM_LDFLAGS = -Wl,-s" to avoid QA warnings - # about pre-stripped binaries. - emake AM_LDFLAGS="" -} - -src_install() { - default - - use doc && dodoc doc/Normaliz.pdf doc/NmzShortRef.pdf - if use extras; then - newdoc Singular/normaliz.pdf singular-normaliz.pdf - insinto /usr/share/${PN} - doins Singular/normaliz.lib - doins Macaulay2/Normaliz.m2 - fi - - find "${ED}" -type f -name "*.la" -delete || die -} diff --git a/sci-mathematics/normaliz/normaliz-3.10.1.ebuild b/sci-mathematics/normaliz/normaliz-3.10.1.ebuild new file mode 100644 index 000000000000..8b7771628d25 --- /dev/null +++ b/sci-mathematics/normaliz/normaliz-3.10.1.ebuild @@ -0,0 +1,73 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit autotools toolchain-funcs + +DESCRIPTION="Tool for computations in affine monoids and more" +HOMEPAGE="https://www.normaliz.uni-osnabrueck.de/" +SRC_URI="https://github.com/Normaliz/Normaliz/releases/download/v${PV}/${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0/3" +KEYWORDS="~amd64 ~arm ~riscv ~x86 ~amd64-linux ~x86-linux" +IUSE="doc extras nauty openmp" + +RDEPEND=" + dev-libs/gmp:=[cxx(+)] + nauty? ( sci-mathematics/nauty ) +" +DEPEND=" + ${RDEPEND} + dev-libs/boost +" +# Only a boost header is needed -> not RDEPEND + +pkg_pretend() { + [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp +} + +pkg_setup() { + [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp +} + +src_prepare() { + # Fix C standard compliance. + default + eautoreconf +} + +src_configure() { + # flint (and arb, which doesn't make an appearance in ./configure --help) + # is somehow connected to e-antic, which we do not yet package. Likewise + # we have no packages for cocoalib or hashlibrary. + econf \ + $(use_enable openmp) \ + $(use_with nauty) \ + --without-cocoalib \ + --without-hashlibrary \ + --without-flint \ + --without-e-antic \ + --disable-static +} + +src_compile() { + # Clobber the default "AM_LDFLAGS = -Wl,-s" to avoid QA warnings + # about pre-stripped binaries. + emake AM_LDFLAGS="" +} + +src_install() { + default + + use doc && dodoc doc/Normaliz.pdf doc/NmzShortRef.pdf + if use extras; then + newdoc Singular/normaliz.pdf singular-normaliz.pdf + insinto /usr/share/${PN} + doins Singular/normaliz.lib + doins Macaulay2/Normaliz.m2 + fi + + find "${ED}" -type f -name "*.la" -delete || die +} diff --git a/sci-mathematics/octave/Manifest b/sci-mathematics/octave/Manifest index 80c390fe740c..ccfbfc71662b 100644 --- a/sci-mathematics/octave/Manifest +++ b/sci-mathematics/octave/Manifest @@ -6,7 +6,9 @@ AUX octave-7.3.0-docs-texinfo-7.0.patch 1623 BLAKE2B 36a6ceda753083171ece9e4045a DIST octave-7.3.0.tar.xz 26215288 BLAKE2B 53fff89e798f8b8795f83e46f66793f2cf37f98933fa62a47d5ec389f89a3447eb96128c1d6b68a4184630d071ecf1a4323299c251b43c3211a8f781486b32e5 SHA512 1399d7010cbd4e83d6dc60ab8cc2abb20e64a762e905a00066e6331c5350df93b4ff8f2670fd52fc183918cea21bc176cb263ca71080de6e4041f5e0ea21558e DIST octave-8.1.0.tar.xz 26957620 BLAKE2B d1d90a242b1517dd0284af454b9de83238c5f515690c1ffd8bd5d8c43ff6c690ccab590a877e74631394295b97292d71b2dc1c62ea50f0c4ff3e9ac728f67dbf SHA512 7e43e1a272cb51e981d4f534bbed2c2915bb714be3f151f98862ed8ecec1ee3a90600dd22778077b6cdecee4c802a2e4d13a49c339cef683e1356941b9e1cd1d DIST octave-8.2.0.tar.xz 26970452 BLAKE2B c5bd03861681a7e194a0fb195433d085fc7d98eb3c6f65929ad53c93afef199062902293082e5aeab7c5e15e0045093efbebcc860052e6081708947483425f2f SHA512 9f56428e990c6aa71a5cfe7698602ba681535c36b140fa9248536c260afebd19f6125c92a0fd6d14fab5a794de49e03ccc98e89ac879108f635b3ffc4ec40514 +DIST octave-8.3.0.tar.xz 26970776 BLAKE2B 8c7241ff6bd5b23244edb47e74753ddf867139280b899b16ae2cab91c30a73ebdcf471d032ee47bddb67f8c7f5c772a23f4a832cadcca7ada01468b84e451ad4 SHA512 b7c8724ca8376783e8563c2050c2d9219309e559116e5cba0fdc9f50780782ff4cc98d382bdbe26055aebffb6be99b110033c682f661a3966ea1b1ddb12d4ac3 EBUILD octave-7.3.0-r2.ebuild 6728 BLAKE2B 71e9479d926d8309750e7a9fe273cbc974d9c31e25db5a7e7433ee1926bee0aadc90cf40911897816ad178af7464ea21c877f37bb4787bdcf002469a7a0b7e7d SHA512 cbb2754d28e5cf8b2533baa076841b95ed6d18f19f3c0a21a1accff4bb38c073c64552cf6b7afab51a1a9557280b2c14065a525b4c3033380c8d99def27880f8 EBUILD octave-8.1.0.ebuild 6591 BLAKE2B 5dadb4a7c9630b779979ddb072155ed0f6c01b91fdd9462b0dbefbd68addc8f5adb5d9ed955820b2f23cd86f3a089967e0681b43daf6455ba6e78ca7d3fdb9a2 SHA512 51a3622262c584620170af47bce5e2295f2b1a8257483a8d3b11842e1b39ae205a8ae6b28f0614536a8df8dec6a08581b280f27116720f40e06b065c28b97436 EBUILD octave-8.2.0.ebuild 6648 BLAKE2B 9311b5befed393215880922e48d80bd189c74fab43dba2d29fc75de341ec20382baa41c7359bce32f27e5cd2429b701db3d31ae5c38638407faf6637dbc8f49c SHA512 b3eae1f150e448d3a30ec6d4fb389852a4d3c797c48c31e16a9bba71842fa55931530faab69c875c3d70330c0c00c2666b2c58a96f0b0d2c1828c075c325c1b7 +EBUILD octave-8.3.0.ebuild 6648 BLAKE2B 9311b5befed393215880922e48d80bd189c74fab43dba2d29fc75de341ec20382baa41c7359bce32f27e5cd2429b701db3d31ae5c38638407faf6637dbc8f49c SHA512 b3eae1f150e448d3a30ec6d4fb389852a4d3c797c48c31e16a9bba71842fa55931530faab69c875c3d70330c0c00c2666b2c58a96f0b0d2c1828c075c325c1b7 MISC metadata.xml 1703 BLAKE2B 0471bc1eeaa2ce86b8eeca5c3e831eb0d9207b5fd1d3c03aba017a257b7b98b313c42a1054471c79dab1b5d2d84df8a8d3b0ee68e772cbe6970ac92f07dc3269 SHA512 3c051ff80c958af4315faa1670cc5e1d6a53397b4182304b760cf4f2e14f716e187dd76879d094e35713ac115c47ea623530c2f4b114f7bf2eae1cdf28bc46b8 diff --git a/sci-mathematics/octave/octave-8.3.0.ebuild b/sci-mathematics/octave/octave-8.3.0.ebuild new file mode 100644 index 000000000000..d0d284820f9f --- /dev/null +++ b/sci-mathematics/octave/octave-8.3.0.ebuild @@ -0,0 +1,241 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit autotools flag-o-matic fortran-2 java-pkg-opt-2 pax-utils qmake-utils toolchain-funcs xdg + +DESCRIPTION="High-level interactive language for numerical computations" +HOMEPAGE="https://www.gnu.org/software/octave/" +SRC_URI="mirror://gnu/${PN}/${P}.tar.xz" + +LICENSE="GPL-3" +SLOT="0/${PV}" +IUSE="curl doc fftw fltk +glpk gnuplot gui hdf5 imagemagick java json opengl portaudio postscript +qhull +qrupdate readline sndfile +sparse ssl sundials X zlib" +KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ppc ~ppc64 ~riscv ~x86 ~amd64-linux ~x86-linux" + +# Although it is listed in INSTALL.OCTAVE as a build tool, Octave runs +# "makeinfo" from sys-apps/texinfo at runtime to convert its texinfo +# documentation to text (see scripts/help/help.m). +# +# (un)zip isn't mentioned, but there's a test that uses it (bug #775254). +# +# The use of USE=imagemagick to pull in media-gfx/graphicsmagick is not +# ideal, but both "graphicsmagick" and "imagemagick" are global USE +# flags whose existing descriptions conflict with the obvious way we +# would want to use them in octave. In any case, upstream doesn't really +# support imagemagick, only graphicsmagick (bug 864785). +RDEPEND=" + app-arch/bzip2 + app-arch/unzip + app-arch/zip + app-text/ghostscript-gpl + sys-apps/texinfo + dev-libs/libpcre2 + sys-libs/ncurses:= + sys-libs/zlib + virtual/blas + virtual/lapack + curl? ( net-misc/curl:= ) + fftw? ( sci-libs/fftw:3.0= ) + fltk? ( >=x11-libs/fltk-1.3:1=[opengl,xft] ) + glpk? ( sci-mathematics/glpk:= ) + gnuplot? ( sci-visualization/gnuplot ) + gui? ( + dev-qt/qtcore:5 + dev-qt/qtgui:5 + dev-qt/qthelp:5 + dev-qt/qtnetwork:5 + dev-qt/qtopengl:5 + dev-qt/qtprintsupport:5 + dev-qt/qtwidgets:5 + x11-libs/qscintilla:= + ) + hdf5? ( sci-libs/hdf5:= ) + imagemagick? ( media-gfx/graphicsmagick:=[cxx] ) + java? ( >=virtual/jre-1.8:* ) + json? ( dev-libs/rapidjson ) + opengl? ( + media-libs/freetype:= + media-libs/fontconfig:= + virtual/glu + x11-libs/gl2ps:= + ) + portaudio? ( media-libs/portaudio ) + postscript? ( + app-text/epstool + media-gfx/pstoedit + media-gfx/transfig + ) + qhull? ( media-libs/qhull:= ) + qrupdate? ( sci-libs/qrupdate:= ) + readline? ( sys-libs/readline:= ) + sndfile? ( media-libs/libsndfile ) + sparse? ( + sci-libs/arpack:= + sci-libs/camd:= + sci-libs/ccolamd:= + sci-libs/cholmod:= + sci-libs/colamd:= + sci-libs/cxsparse:= + sci-libs/umfpack:= + ) + ssl? ( + dev-libs/openssl:= + ) + sundials? ( >=sci-libs/sundials-4:= ) + X? ( x11-libs/libX11:= ) +" +DEPEND="${RDEPEND}" +BDEPEND=" + dev-util/gperf + virtual/pkgconfig + doc? ( + dev-texlive/texlive-fontsrecommended + dev-texlive/texlive-plaingeneric + dev-texlive/texlive-metapost + virtual/latex-base + ) + java? ( >=virtual/jdk-1.8:* ) + gui? ( dev-qt/linguist-tools:5 ) + qrupdate? ( app-misc/pax-utils ) + sparse? ( app-misc/pax-utils ) +" + +# There are three ways to plot in Octave: +# +# 1. The old gnuplot renderer +# 2. The OpenGL renderer using the FLTK backend +# 3. The OpenGL renderer using the Qt backend +# +# It's possible to use the Qt GUI without OpenGL, but OpenGL rendering +# is all that FLTK is used for, so it doesn't make sense to enable +# USE=fltk without USE=opengl. +# +# Building without either USE=gnuplot or USE=opengl is technically legal, +# but will leave you unable to plot anything. +# +# Octave's FLTK support is unofficially deprecated, in the sense that +# you'll often get "why are you using FLTK?" in response to +# bugs. (Upstream bug 59321 for a random example.) In the future, it +# will probably make sense to merge USE=opengl and USE=X into USE=gui, +# dropping USE=fltk entirely. +REQUIRED_USE=" + fltk? ( opengl X ) + gui? ( X ) + opengl? ( || ( fltk gui ) ) +" + +PATCHES=( + "${FILESDIR}"/${PN}-5.1.0-pkgbuilddir.patch + "${FILESDIR}"/${PN}-6.4.0-omit-qtchooser-qtver.patch +) + +src_prepare() { + default + + # occasional fail on install, force regeneration (bug #401189) + rm doc/interpreter/contributors.texi || die + + eautoreconf +} + +src_configure() { + # libstdc++ bug, bug #887815 + append-cxxflags -U_GLIBCXX_ASSERTIONS + + # Unfortunate dependency on mpi from hdf5 (bug #302621) + use hdf5 && has_version sci-libs/hdf5[mpi] && \ + export CXX=mpicxx CC=mpicc FC=mpif77 F77=mpif77 + + # Tell autoconf where to find qt binaries, fix bug #837752 + export MOC="$(qt5_get_bindir)/moc" \ + UIC="$(qt5_get_bindir)/uic" \ + RCC="$(qt5_get_bindir)/rcc" \ + LRELEASE="$(qt5_get_bindir)/lrelease" \ + QCOLLECTIONGENERATOR="$(qt5_get_bindir)/qcollectiongenerator" \ + QHELPGENERATOR="$(qt5_get_bindir)/qhelpgenerator" + + # Some of these use_with flags are a bit mismatched. The configure + # script offers only --without-foo, and detects "foo" automatically + # unless --without-foo is specified. Passing --with-foo is not an + # error, however, so it kind of works. We wind up with, for example, + # + # --with-sundials_ida (no-op) with USE="sundials" + # --without-sundials_ida (disables it) with USE="-sundials" + # + local myeconfargs=( + --localstatedir="${EPREFIX}/var/state/octave" + --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" + --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" + --disable-64 + --enable-shared + --with-z + --with-bz2 + + # bug #901965 + --without-libiconv-prefix + --without-libreadline-prefix + + $(use_enable doc docs) + $(use_enable java) + $(use_enable json rapidjson) + $(use_enable readline) + $(use_with curl) + $(use_with fftw fftw3) + $(use_with fftw fftw3f) + $(use_enable fftw fftw-threads) + $(use_with glpk) + $(use_with hdf5) + $(use_with imagemagick magick GraphicsMagick++) + $(use_with opengl) + $(use_with fltk) + $(use_with ssl openssl) + $(use_with portaudio) + $(use_with qhull qhull_r) + $(use_with qrupdate) + $(use_with gui qt 5) + $(use_with sndfile) + $(use_with sparse arpack) + $(use_with sparse umfpack) + $(use_with sparse colamd) + $(use_with sparse ccolamd) + $(use_with sparse cholmod) + $(use_with sparse cxsparse) + $(use_with sundials sundials_ida) + $(use_with X x) + ) + + econf "${myeconfargs[@]}" +} + +src_compile() { + # Otherwise it will write to /var/cache/fonts/ and trip sandbox + export VARTEXFONTS="${T}/fonts" + + default + + if use java; then + pax-mark m "${S}/src/.libs/octave-cli" + fi +} + +src_install() { + default + + if use doc; then + dodoc $(find doc -name '*.pdf') + else + # bug #566134, macros.texi is installed by make install if use doc + insinto /usr/share/${PN}/${PV}/etc + doins doc/interpreter/macros.texi + fi + + use java && \ + java-pkg_regjar "${ED}/usr/share/${PN}/${PV}/m/java/octave.jar" + + echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}/${PV}" > 99octave || die + doenvd 99octave + + find "${ED}" -type f -name '*.la' -delete || die +} -- cgit v1.2.3