From d934827bf44b7cfcf6711964418148fa60877668 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Wed, 25 Nov 2020 22:39:15 +0000 Subject: gentoo resync : 25.11.2020 --- sci-libs/Manifest.gz | Bin 41982 -> 41482 bytes sci-libs/Rtree/Manifest | 5 - sci-libs/Rtree/Rtree-0.8.3_p20180802.ebuild | 28 - sci-libs/Rtree/Rtree-0.9.4.ebuild | 24 - sci-libs/Rtree/metadata.xml | 17 - sci-libs/Shapely/Manifest | 6 - sci-libs/Shapely/Shapely-1.6.4_p2-r1.ebuild | 55 -- sci-libs/Shapely/Shapely-1.7.0.ebuild | 34 -- .../files/Shapely-1.6.4_p2-test_operations.patch | 17 - sci-libs/Shapely/metadata.xml | 17 - sci-libs/adolc/Manifest | 3 +- sci-libs/adolc/adolc-2.7.2.ebuild | 14 +- .../files/adolc-2.7.2-swig-python-configure.patch | 391 ++++++++++++++ sci-libs/amd/Manifest | 2 +- sci-libs/amd/amd-2.4.6.ebuild | 2 +- sci-libs/arpack/Manifest | 6 +- sci-libs/arpack/arpack-3.1.5.ebuild | 64 --- sci-libs/arpack/arpack-3.5.0.ebuild | 62 --- sci-libs/arpack/arpack-3.7.0.ebuild | 2 +- sci-libs/blas-reference/Manifest | 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to 'sci-libs') diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz index d721f59f69f5..22f6ab52e4ac 100644 Binary files a/sci-libs/Manifest.gz and b/sci-libs/Manifest.gz differ diff --git a/sci-libs/Rtree/Manifest b/sci-libs/Rtree/Manifest deleted file mode 100644 index ccdc0a2483b4..000000000000 --- a/sci-libs/Rtree/Manifest +++ /dev/null @@ -1,5 +0,0 @@ -DIST Rtree-0.8.3_p20180802.tar.gz 48893 BLAKE2B bd0745e8e5051a772c2d50fe35712dc661737f32f6af382579dbbffc7467c21ef73bbeb794489da9891e50497b6f8775b1a670185453d54881e6dc8496fef539 SHA512 10c35a1d00369b3a30c486830d7cecdae6bd9bbc2ab9ea7f398227bc46b116783b1486cc75759eb27d7b25439400cbc39b55e6f58c686caec45bbc8436c6067c -DIST Rtree-0.9.4.tar.gz 62017 BLAKE2B 72a979a3b9b9e9e1d18ea8646bbf860413c18420ce40946108c4f2f0e59fcb5bb64971a57936a92714e02e13419f7dc594b2371e4b44a4fd6a3e3986c19f7d85 SHA512 59981ffefedac1162faaa86ea10d7d5503da46c7ae9588a57e1a49214043de5f41bd4836965651d4cd22e7959c37cc6d586d9912568a2aaf693a0afb7895b429 -EBUILD Rtree-0.8.3_p20180802.ebuild 677 BLAKE2B 63182b2364e40bfccfd82b80ed5e9f7d552e276d53d002023572d6791b2ceb6d84c50921c6ee1315b9c17d80e694c22c37f407edc4f44e8817f22e768329db72 SHA512 35f3477cb35cb9b37683d51d08d72336d3bd526600acdfd5e28dc07972468f638633c0880b6b9a43a3735087e1a4a806362c33802d9ebe20fdbfdd406d21c088 -EBUILD Rtree-0.9.4.ebuild 495 BLAKE2B b6e693428baa03a3e91ce43ccc413d04d5167fa1f7ba4418f6ddc3e1d24925d96494fb4d6b102af4af28f4a787ea62d4520f4b11d12cd9221c16a7a3a3bfb7bb SHA512 ce8c6940c6f81ef921f5d0e9a599ff24be6c5e65e500375169d5a50f73c21b4e7c3993ab804c11c53b77728b6f900ade6abeb1885870cce326fb63abba127304 -MISC metadata.xml 701 BLAKE2B 1f89c6481c0856f2bd0ca2431151ecef5c01b015c443efcfb837be7cbe84ac218b3811e3710e678650916094ab9c8e0d18b2bb0a8beea10a7b6c73e7df23d646 SHA512 c145907e76558f657c5ca11540fc83ed3fe42917b496c4885b9826fdeb6253594f8656f9e663bbb519b47f3590ef0068f28e75f2a14248f7cc9508d7f8d7db81 diff --git a/sci-libs/Rtree/Rtree-0.8.3_p20180802.ebuild b/sci-libs/Rtree/Rtree-0.8.3_p20180802.ebuild deleted file mode 100644 index 0832cb96d361..000000000000 --- a/sci-libs/Rtree/Rtree-0.8.3_p20180802.ebuild +++ /dev/null @@ -1,28 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI="7" -PYTHON_COMPAT=( python3_{6,7} ) - -inherit distutils-r1 - -EGIT_COMMIT_HASH="c6437a8ae182cb58aef1d0a4465bfc0c6f75b273" - -DESCRIPTION="R-Tree spatial index for Python GIS" -HOMEPAGE="https://github.com/Toblerity/rtree" -SRC_URI="https://github.com/Toblerity/rtree/archive/${EGIT_COMMIT_HASH}.tar.gz -> ${P}.tar.gz" - -LICENSE="LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="test" -RESTRICT="!test? ( test )" - -RDEPEND="sci-libs/libspatialindex" -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]" - -S="${WORKDIR}/rtree-${EGIT_COMMIT_HASH}" - -python_test() { - pytest -vv || die -} diff --git a/sci-libs/Rtree/Rtree-0.9.4.ebuild b/sci-libs/Rtree/Rtree-0.9.4.ebuild deleted file mode 100644 index ee3030b4dffd..000000000000 --- a/sci-libs/Rtree/Rtree-0.9.4.ebuild +++ /dev/null @@ -1,24 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..8} ) - -inherit distutils-r1 - -DESCRIPTION="R-Tree spatial index for Python GIS" -HOMEPAGE="https://rtree.readthedocs.io/en/latest/" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" -LICENSE="MIT" - -KEYWORDS="~amd64 ~x86" -SLOT="0" - -S=${WORKDIR}/${MY_P} - -RDEPEND="sci-libs/libspatialindex" - -distutils_enable_sphinx docs/source - -distutils_enable_tests pytest diff --git a/sci-libs/Rtree/metadata.xml b/sci-libs/Rtree/metadata.xml deleted file mode 100644 index d03728e20d7e..000000000000 --- a/sci-libs/Rtree/metadata.xml +++ /dev/null @@ -1,17 +0,0 @@ - - - - - 3dprint@gentoo.org - Gentoo 3D Printer Project - - - Rtree is a ctypes Python wrapper of libspatialindex that provides a number of advanced spatial indexing - features for the spatially curious Python user. - - - https://github.com/Toblerity/rtree/issues - Toblerity/rtree - Rtree - - diff --git a/sci-libs/Shapely/Manifest b/sci-libs/Shapely/Manifest deleted file mode 100644 index db7e1a605569..000000000000 --- a/sci-libs/Shapely/Manifest +++ /dev/null @@ -1,6 +0,0 @@ -AUX Shapely-1.6.4_p2-test_operations.patch 722 BLAKE2B 661659bc1d2f8c8a5d6b77f0ca746024aa9724f2c25047d8203d591a4f793982d4cf9bebaa6abcaf48c0cf1b266ef941b986897d26bece39519f8fcaf5dcaf96 SHA512 c1e9eda0cf8dbfbcee2d6994f470559507c754fa2bf03973ac692ca6bd2fcf62ce05e15116515877e8900a89c55c6b2bf6e70b74e2cfced8d3852608901b34db -DIST Shapely-1.6.4.post2.tar.gz 225745 BLAKE2B 96e995db6dd1464bac7c2562efdc7f298a5f23c388e44f334db685b1cfa1025ff403db870e11328977a267483726504e03b6d7c47fe4234a3a5966a13b2b7311 SHA512 027c816ef2104f654569ca658b52b87c60e5ba6a45927fcc51c23dd1922f3f9f7fdcea3601160b0a999e39611617142833ccac790777093be8b96a0d9083f78f -DIST Shapely-1.7.0.tar.gz 281419 BLAKE2B 1a4e84104f21d2f5a5eb810883a89deb20fd47cf146efed884994786364b29bb5a194b063a50ae21842c07c335cbbee0c3d1a1e4ff4e43e0d083080fe33815ac SHA512 4d944fc6727e11d004ef7ba0325c159aa5ae03043f17b029ab0a399d6dcd361c4d299ad864a045a99b0229e333d5b42634bc6fd1ed94b914b7cf58fb886af2de -EBUILD Shapely-1.6.4_p2-r1.ebuild 1237 BLAKE2B b51a668790e3cfeb75a7088bb25f57d8b4aa5a52e8d056d87693db69cacfa56c2f33c40509475f118bb77b9d583f62028b58a9dd9940417ba135739fbecd69bd SHA512 2695c1473dc5c02ba056f12dbb4c43d98209976411f69dd03c04550abc9d5dae00b703dcaa3238d08010cb7d9b90cec66bbe45f3a39aadf1f58e122a33a7b1bd -EBUILD Shapely-1.7.0.ebuild 778 BLAKE2B d2b6e62575cbb785b4a6ec2201badb2910661bba281ed8dcb06052982788b096c9f7bc3e9baaa73d470d93de29729d890f6a363fb6b0cd1b34c822c05556e9f6 SHA512 c3c062ce96c00da0be73aa75b2458ec95fff4a20dc703b06c48b8fda7d248f553c027d2a405d83c6de5fa8a3f96280a4f2393c2da5858b75d7c215b71b7eea31 -MISC metadata.xml 774 BLAKE2B 418f9b236cefcea8bd6d1e4a7b7d85b2f0ff55060a6e4c75597d4db592a51e843264817643e8d0758bb82a35f1fc60bf99353561590233485122bb4869e584ce SHA512 7f580b0fbdb663892f4454815e29ceae0d31ce4d29659de7e4478f7ff86fc03625eaf65c643dbd24d4ffc30a7f0b6f535658b4d084dc25c3c47cbca92d7fc210 diff --git a/sci-libs/Shapely/Shapely-1.6.4_p2-r1.ebuild b/sci-libs/Shapely/Shapely-1.6.4_p2-r1.ebuild deleted file mode 100644 index a9ad4b613f26..000000000000 --- a/sci-libs/Shapely/Shapely-1.6.4_p2-r1.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{6,7,8} ) - -inherit distutils-r1 - -DESCRIPTION="Geometric objects, predicates, and operations" -HOMEPAGE="https://pypi.org/project/Shapely/" - -MY_PV="$(ver_cut 1-3).post$(ver_cut 5)" - -if [[ ${PV} == "9999" ]] ; then - inherit git-r3 - SRC_URI="" - EGIT_REPO_URI="https://github.com/Toblerity/${PN}.git" -else - SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${PN}-${MY_PV}.tar.gz" - KEYWORDS="amd64 ~arm64 x86" -fi - -LICENSE="BSD" -SLOT="0" -IUSE="test" - -BDEPEND="dev-python/setuptools[${PYTHON_USEDEP}] - test? ( dev-python/pytest[${PYTHON_USEDEP}] )" -RDEPEND="dev-python/numpy[${PYTHON_USEDEP}] - >=sci-libs/geos-3.3" -DEPEND="${RDEPEND} - dev-python/cython[${PYTHON_USEDEP}]" - -RESTRICT="!test? ( test )" - -PATCHES=( "${FILESDIR}/${P}-test_operations.patch" ) # bug 701624 - -S="${WORKDIR}/${PN}-${MY_PV}" - -python_prepare_all() { - # fix install path for Cython definition file - sed -i \ - -e "s|\(data_files.*\)'shapely'|\1'share/shapely'|" \ - setup.py || die - - distutils-r1_python_prepare_all -} - -python_test() { - distutils_install_for_testing - cd "${TEST_DIR}/lib" || die - cp -r "${S}/tests" . || die - py.test tests || die -} diff --git a/sci-libs/Shapely/Shapely-1.7.0.ebuild b/sci-libs/Shapely/Shapely-1.7.0.ebuild deleted file mode 100644 index a9bd484c2d61..000000000000 --- a/sci-libs/Shapely/Shapely-1.7.0.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{7..8} ) - -inherit distutils-r1 - -DESCRIPTION="Geometric objects, predicates, and operations" -HOMEPAGE="https://pypi.org/project/Shapely/ https://github.com/Toblerity/Shapely" -SRC_URI="https://github.com/Toblerity/Shapely/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~arm64 ~x86" - -RDEPEND=" - dev-python/numpy[${PYTHON_USEDEP}] - >=sci-libs/geos-3.3 -" - -BDEPEND="${RDEPEND} - dev-python/cython[${PYTHON_USEDEP}] -" - -distutils_enable_tests pytest - -distutils_enable_sphinx docs dev-python/matplotlib - -python_test() { - distutils_install_for_testing - ${EPYTHON} -m pytest tests || die "tests failed under ${EPYTHON}" -} diff --git a/sci-libs/Shapely/files/Shapely-1.6.4_p2-test_operations.patch b/sci-libs/Shapely/files/Shapely-1.6.4_p2-test_operations.patch deleted file mode 100644 index a9213a333765..000000000000 --- a/sci-libs/Shapely/files/Shapely-1.6.4_p2-test_operations.patch +++ /dev/null @@ -1,17 +0,0 @@ -Description: Mark test_operations as xfail. - # Intersection - > self.assertIsInstance(point.intersection(Point(-1, -1)), - GeometryCollection) - E AssertionError: is not an instance of -Author: Bas Couwenberg - ---- a/tests/test_operations.py -+++ b/tests/test_operations.py -@@ -7,6 +7,7 @@ from shapely.geos import TopologicalErro - - class OperationsTestCase(unittest.TestCase): - -+ @pytest.mark.xfail(reason="Intersection: Point is not an instance of GeometryCollection") - def test_operations(self): - point = Point(0.0, 0.0) - diff --git a/sci-libs/Shapely/metadata.xml b/sci-libs/Shapely/metadata.xml deleted file mode 100644 index 4cb05623997a..000000000000 --- a/sci-libs/Shapely/metadata.xml +++ /dev/null @@ -1,17 +0,0 @@ - - - - - expeditioneer@gentoo.org - Dennis Lamm - - - Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. - It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries. - Shapely is not concerned with data formats or coordinate systems, but can be readily integrated with packages that are. - - - Toblerity/Shapely - Shapely - - diff --git a/sci-libs/adolc/Manifest b/sci-libs/adolc/Manifest index 2e29e087fbac..eb7cb16b829d 100644 --- a/sci-libs/adolc/Manifest +++ b/sci-libs/adolc/Manifest @@ -2,11 +2,12 @@ AUX adolc-2.4.0-no-colpack.patch 580 BLAKE2B 95247622f68b6e5c4f45eb6eef7cd99f759 AUX adolc-2.5.0-no-colpack.patch 1424 BLAKE2B ea11eed8f816daaa9809b8f6a6f20e87a22acbf2d210f60000b93635f68d5f362530bac5a46c173ffbd33aec31769c6e5dadf9f638779bbdc0e17483b1a0f5c4 SHA512 826023e0066620a1885a462c31cb5be80d880f917df26c007564e327b8be8513621e56b601b6f9bfcec0fc617a15eea5016436aa08bebb0346254089a5d850ec AUX adolc-2.5.0-pkgconfig-no-ldflags.patch 364 BLAKE2B a35ab92ca491110c390a4d0f90c7cb12f417891762571ec91ce64fb81d84c4a7e3249971302e3801f721e7791725e37e3f4d241160ec80c5c633af096cad9107 SHA512 914bd01428fc07f50985afc076722778029835048883eade3730878c2d103cd29c288656d524ad3895416e94b50b5db2f53e35fdab0ed2a0f364669bf304af41 AUX adolc-2.6.2-dash.patch 4516 BLAKE2B 8db052472bd3051ed0b8b1a180aac4098862695cefeed0f0f94600d447b2ef5b888ba072613ea101ac1435569eb9d5bcba1aa64b23a0bc7cf01a4ef20d3f760b SHA512 9b904d8c0ab3c286af27b293b5ffe516b9c1da53169702f94a9213496b6626e1a587e8ab8d9d25b983872c1a97620a8d5386d9053ba1a4c973ef5e145f655bc5 +AUX adolc-2.7.2-swig-python-configure.patch 15544 BLAKE2B 83a31d310e6ae4245085af960ef8440983defd75fa04fac63c24171640886c17a093f44a868c397db8f4189db61f523aa98b75bcab2238ab4931d6b94290f5c7 SHA512 661c4a939d58b7593dc4fbce5874c4e0e918ea54ca1163ae2984aeef528fe4a2c67128070d4f6fc3e33aab2d1e7b7d5e2ae244cea34111c69c72478e5949755f DIST ADOL-C-2.4.1.tgz 2210414 BLAKE2B f9b1fd7f0e619d811b29e077e436697dc8b5a388568d73b2db602e57f97cbb690a5b47a55c722ae45cc28698dd19949eddb9d02e11c87383191e217f012519bb SHA512 5e5135ca587d159510bf77338fdff3d324f4d32c4ec6f8cf64ddc92253b427b8ee26a30bc1d83fe18121bbfdc7454c3536f58849c0c335e1b240e39d46acdccc DIST ADOL-C-2.6.3.tgz 2416928 BLAKE2B 74e575a1a919bc2787be0c29deaac4b503c077cb06efdba3f2382f21abf1ed53e8cb5f41729dc39f9188e44460fa137a09cffdb296b5f92131153795f36fa83a SHA512 e3c44b1f8ab5211a8a3c3163124e35b6d1e9551672ab4944d983dd3117f609d512c1b08c61e535dc4d50089295ee565bec07aaca67aa88b57b17bc3906573262 DIST adolc-2.7.2.tar.gz 2447479 BLAKE2B 0f871ce1dcb50bb14684e45e265cf45807f514dd3ca0dbaaedede2c7117d34cc5a34b0096a34c8ec37023e50aec7fd4be6561819d6297771e7f7fcaa7ba0e507 SHA512 b896650077367fd7388a6c5a40e5d8bb3f19af9e3bc5b067fd1d9a769809b77ccdfb5ef11ef481ab791c0f040401aaed0053cba55d4c2a3383c0d056122280f6 EBUILD adolc-2.4.1.ebuild 863 BLAKE2B e3455061dfd93d3fd14ae07051da5e3a99576d8e20d7ec5f28aad0daae9f0ef37dc0f4ba2565cf4edb96ffb7d07ad6055f06335302a787bd7e88e8c84fdebea1 SHA512 c409dd49db0d5c1043a50aae33d6dfd07e24c1f62f18abd4906ea7468944ec46f89d1e80be97af6c166b0cf1d00a2a38383555e7d1e76e062a136b32ab98006d EBUILD adolc-2.6.3-r1.ebuild 1215 BLAKE2B 3ae1cf484b9f241225703e0da2202ff1e95e8cc850cd3bfd7278bc73e568cd65d39ad48a77a311cac7c21e06af7508305702dde33aa9bc10d516e2b5af4de2ba SHA512 b84eef882252394bbb6253b707e45bb8779dbe3066b6b2d64db032d0be06d9866ba63554ff78f620887b83b91d101c722e2268d21e7222e7e61e5dc486410c63 -EBUILD adolc-2.7.2.ebuild 1366 BLAKE2B 9d56381152f11b278f5bcbb150aab07d5cb1b8539223da53a6ff3526d813b0d7a1b0726cc78aa2f74f2df44c784ac8a801339f9b4c8b9e3e68353456da691b19 SHA512 e5098c625210d6fe7aadde93a92c79e1c9c2748ea97303c9d3acb176ce67be8d6f9ef1976821320bdea070ea43f00e24571ef13d1aa3bee4cbd694133a8bbde4 +EBUILD adolc-2.7.2.ebuild 1660 BLAKE2B 5187dffa6f999861d6c65ce07493b55a15338b606a522179ab4c4c36cfa51137c64e042210fe8aea3b674482e3b3c13860fa6155159cfb17cc4946f551f12749 SHA512 903bfe1a229fcd15cdd434fae1caf6ae9574536d18714f29db11d706f4fdf11be5fa3ab0c95f5095445b0150685a4fc31f5b3144dbd91f0425fd0c44676b91d5 EBUILD adolc-9999.ebuild 1366 BLAKE2B 9d56381152f11b278f5bcbb150aab07d5cb1b8539223da53a6ff3526d813b0d7a1b0726cc78aa2f74f2df44c784ac8a801339f9b4c8b9e3e68353456da691b19 SHA512 e5098c625210d6fe7aadde93a92c79e1c9c2748ea97303c9d3acb176ce67be8d6f9ef1976821320bdea070ea43f00e24571ef13d1aa3bee4cbd694133a8bbde4 MISC metadata.xml 736 BLAKE2B ddc9935966f95c209568fca01f222894812328b0411a75ee3ff369220860c274d52280c39f916dfdf9fd30ee3a67134a1bdab19feba1bf35b0e2695fa4577a97 SHA512 00cb5d1b587dc4220507a52f2e979fbbeed9035e59e1de26781e33b16d6a16474ad4aeae45ea7a1b8de9193fbe0671ffdd19a07431c33e22ff5586c7216b0522 diff --git a/sci-libs/adolc/adolc-2.7.2.ebuild b/sci-libs/adolc/adolc-2.7.2.ebuild index dc6d88c74f35..52d83ebbf38a 100644 --- a/sci-libs/adolc/adolc-2.7.2.ebuild +++ b/sci-libs/adolc/adolc-2.7.2.ebuild @@ -3,7 +3,7 @@ EAPI=7 -inherit autotools toolchain-funcs eutils +inherit autotools toolchain-funcs DESCRIPTION="Automatic differentiation system for C/C++" HOMEPAGE="https://projects.coin-or.org/ADOL-C/" @@ -11,11 +11,9 @@ HOMEPAGE="https://projects.coin-or.org/ADOL-C/" if [[ ${PV} = *9999* ]]; then inherit git-r3 EGIT_REPO_URI="https://github.com/coin-or/ADOL-C" - SRC_URI="" - KEYWORDS="" else SRC_URI="https://github.com/coin-or/ADOL-C/archive/releases/${PV}.tar.gz -> ${P}.tar.gz" - KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc64 ~x86 ~amd64-linux ~x86-linux" + KEYWORDS="~alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 x86 ~amd64-linux ~x86-linux" S="${WORKDIR}/ADOL-C-releases-${PV}" fi @@ -33,6 +31,7 @@ PATCHES=( "${FILESDIR}"/${PN}-2.5.0-no-colpack.patch "${FILESDIR}"/${PN}-2.5.0-pkgconfig-no-ldflags.patch "${FILESDIR}"/${PN}-2.6.2-dash.patch + "${FILESDIR}"/${P}-swig-python-configure.patch ) src_prepare() { @@ -41,9 +40,14 @@ src_prepare() { } src_configure() { + # Disabling Python for now because swig build + # needs work. Revisit with >=2.7.3. + # https://bugs.gentoo.org/730750 + # https://github.com/coin-or/ADOL-C/issues/20 econf \ --enable-advanced-branching \ --enable-atrig-erf \ + --disable-python \ $(use_enable mpi ampi) \ $(use_enable sparse) \ $(use_enable static-libs static) \ @@ -52,6 +56,8 @@ src_configure() { } src_test() { + # 'check' target is unrelated to checking lib works + # ('check' is more like distcheck) emake test } diff --git a/sci-libs/adolc/files/adolc-2.7.2-swig-python-configure.patch b/sci-libs/adolc/files/adolc-2.7.2-swig-python-configure.patch new file mode 100644 index 000000000000..c434f6556836 --- /dev/null +++ b/sci-libs/adolc/files/adolc-2.7.2-swig-python-configure.patch @@ -0,0 +1,391 @@ +https://bugs.gentoo.org/730750 +https://github.com/coin-or/ADOL-C/commit/8b53408d08f41ddaba2dea5655d332b13fc4c78b.patch +https://github.com/coin-or/ADOL-C/commit/06b3b665fc0253ee17f0208bd06cdc130e103741.patch +https://github.com/coin-or/ADOL-C/commit/25a69c486829ddaa19c115afc05cb7cf3b4e2410.patch +https://github.com/coin-or/ADOL-C/commit/e41d32ba6dab09a3e58b22f1f042e49cd5ee917f.patch +https://github.com/coin-or/ADOL-C/commit/0787a350cc181192cfd203b0f75941bcbd9c3e3a.patch +https://github.com/coin-or/ADOL-C/commit/0b3dd1747f90f68b17dc5f1bd3a5d898e3bc77fb.patch +---- +From e41d32ba6dab09a3e58b22f1f042e49cd5ee917f Mon Sep 17 00:00:00 2001 +From: Andrea Walther +Date: Tue, 22 Sep 2020 10:47:27 +0200 +Subject: [PATCH] fix prefix and provide --enable-python + +--- + configure.ac | 19 ++++++++++++++++++- + 1 file changed, 18 insertions(+), 1 deletion(-) + +diff --git a/configure.ac b/configure.ac +index 6c2c88f9..b6aaeaa7 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -71,6 +71,17 @@ if test x"${adolc_medipack_support}" = xyes ; then + AC_DEFINE(ADOLC_MEDIPACK_SUPPORT,1,[defined if MeDiPack support is to be compiled in]) + fi + ++ ++AC_MSG_CHECKING(whether to build ADOL-C with python/swig support) ++AC_ARG_ENABLE(python, ++ [AS_HELP_STRING([--enable-python],[build ADOL-C with python/swig support [default=disabled]])], ++ [adolc_python_support=$enableval],[adolc_python_support=no]) ++AC_MSG_RESULT($adolc_python_support) ++AM_CONDITIONAL(BUILD_ADOLC_python_SUPPORT,[test x${adolc_python_support} = xyes]) ++if test x"${adolc_python_support}" = xyes ; then ++AC_DEFINE(ADOLC_python_SUPPORT,1,[defined if python/swig support is to be compiled in]) ++fi ++ + LT_PREREQ([2.2.6]) + # checks for programs + AC_PROG_CXX +@@ -651,6 +662,10 @@ if test x$sparse = xyes && test x$have_colpack = xno; then + Only sparsity patterns can be computed\033@<:@0m" + warn=true + fi ++echo \ ++" Build with python: ${adolc_python_support}" ++ ++if test x$adolc_python_support = xyes ; then + if test x$sparse = xyes && test x$python_found = xyes && test x$SWIG != xno; then + echo \ + " Build with python swig module: yes" +@@ -660,7 +675,7 @@ else + if test x$sparse = xno && test x$python_found = xyes && test x$SWIG != xno; then + echo \ + "(due to sparse drivers disabled)" +- elif test x$sparse = xyes && ( $test x$python_found = xno || test x$SWIG = xno ); then ++ elif test x$sparse = xyes && ( test x$python_found = xno || test x$SWIG = xno ); then + echo \ + "(due to python/swig missing)" + else +@@ -668,6 +683,8 @@ else + "(due to sparse drivers disabled and python/swig missing)" + fi + fi ++fi ++ + echo + + echo \ +From 8b53408d08f41ddaba2dea5655d332b13fc4c78b Mon Sep 17 00:00:00 2001 +From: Kshitij Kulshreshtha +Date: Tue, 31 Mar 2020 22:42:23 +0200 +Subject: [PATCH] Fix out-of-tree build for swig + +--- + ADOL-C/swig/Makefile.am | 4 +-- + ADOL-C/swig/setup.py | 65 +++++++++++++++++++++++++++----------- + ADOL-C/swig/swigprocess.py | 34 +++++++++++--------- + Makefile.am | 3 +- + configure.ac | 6 ++++ + 5 files changed, 75 insertions(+), 37 deletions(-) + +diff --git a/ADOL-C/swig/Makefile.am b/ADOL-C/swig/Makefile.am +index 04a52cd0..b1d5569b 100644 +--- a/ADOL-C/swig/Makefile.am ++++ b/ADOL-C/swig/Makefile.am +@@ -12,7 +12,7 @@ + + ACLOCAL_AMFLAGS = -I autoconf + +-EXTRA_DIST = swigprocess.py adolc-r.i adolc-python.i adubswigfuncs.h adolc_all_in.hpp matrixmemory.hpp pyedfclasses.hpp ++EXTRA_DIST = swigprocess.py adolc-r.i adolc-python.i adubswigfuncs.hpp adolc_all_in.hpp matrixmemory.hpp pyedfclasses.hpp + + clean-local: + -rm -rf python R *.cpp *.cxx *.o *.h include +@@ -20,6 +20,6 @@ clean-local: + if PYTHONFOUND + if SPARSE + install: +- CXX=${CXX} ${PYTHON} setup.py install --prefix=${prefix} --only-swig ++ CXX=${CXX} ${PYTHON} ${srcdir}/setup.py build --only-swig --lib-prefix=${prefix} @python_srcbase@ install --prefix=${prefix} + endif + endif +diff --git a/ADOL-C/swig/setup.py b/ADOL-C/swig/setup.py +index 7a9a25c4..5bd98c3a 100644 +--- a/ADOL-C/swig/setup.py ++++ b/ADOL-C/swig/setup.py +@@ -11,6 +11,10 @@ + ############################################################################## + + from __future__ import print_function ++import sys, os ++ ++sys.path = [ os.path.dirname(os.path.abspath(__file__)) ] + sys.path ++ + from swigprocess import prepare_flat_header + from numpy.distutils import misc_util as np_dist + from distutils.core import setup, Extension +@@ -18,7 +22,6 @@ + from distutils.command.build_ext import build_ext + from distutils.command.build import build + from distutils.command.install import install +-import os + import subprocess + + def compile_dynlib(prefix,colpackdir,boostdir): +@@ -88,14 +91,34 @@ def finalize_options(self): + prefix = self.lib_prefix + print('prefix = ', prefix) + self.include_dirs.append(os.path.join(prefix,'include')) +- self.library_dirs.append(os.path.join(prefix,'lib64')) +- self.rpath.append(os.path.join(prefix,'lib64')) +- prepare_flat_header() ++ import ctypes as c ++ plen = c.sizeof(c.c_void_p(0)) ++ if plen == 8: ++ self.library_dirs.append(os.path.join(prefix,'lib64')) ++ self.rpath.append(os.path.join(prefix,'lib64')) ++ else: ++ self.library_dirs.append(os.path.join(prefix,'lib')) ++ self.rpath.append(os.path.join(prefix,'lib')) ++ buildobj = self.get_finalized_command('build') ++ self.src = buildobj.src ++ prepare_flat_header(self.src) ++ self.swig_opts = ['-c++', '-I' + self.src] ++ self.finalized = 1 + ++ def build_extension(self, ext): ++ if self.src != '.': ++ import shutil ++ sources = ext.sources ++ newSrc = [] ++ for s in iter(sources): ++ shutil.copy(self.src + '/' + s, '.') ++ ext.include_dirs.append(self.src) ++ super(build_swigadolc,self).build_extension(ext) + + class buildthis(build,object): + command_name = 'build' + user_options = build.user_options + [ ++ ('src=', None, 'path of the source directory of swig module'), + ('lib-prefix=', None, 'prefix to install adolc library'), + ('colpack-dir=', None, 'directory in which colpack is installed'), + ('boost-dir=', None, 'directory in which boost is installed'), +@@ -111,11 +134,26 @@ def lib_doesnot_exist(self): + + def initialize_options(self): + super(buildthis,self).initialize_options() ++ self.src = None + self.lib_prefix = None + self.colpack_dir = None + self.boost_dir = None + self.only_swig = None + ++ def finalize_options(self): ++ super(buildthis,self).finalize_options() ++ if self.src is None: ++ self.src = '.' ++ if self.lib_prefix is None: ++ self.lib_prefix = os.path.join(os.environ['HOME'],'adolc_base') ++ if self.colpack_dir is None: ++ self.colpack_dir = os.path.join(os.environ['HOME'],'adolc_base') ++ if self.boost_dir is None: ++ self.boost_dir = '/usr' ++ if self.only_swig is None: ++ self.only_swig = False ++ self.finalized = 1 ++ + #sub_commands = [ ('build_lib', lib_doesnot_exist), + # ('build_ext', None) ] + sub_commands = [ ('build_lib', None), +@@ -137,22 +175,13 @@ def initialize_options(self): + super(installthis,self).initialize_options() + + def finalize_options(self): ++ self.set_undefined_options('build', ++ ('lib_prefix','lib_prefix'), ++ ('colpack_dir', 'colpack_dir'), ++ ('boost_dir', 'boost_dir'), ++ ('only_swig', 'only_swig')) + super(installthis,self).finalize_options() +- if self.lib_prefix is None: +- self.lib_prefix = os.path.join(os.environ['HOME'],'adolc_base') +- if self.colpack_dir is None: +- self.colpack_dir = os.path.join(os.environ['HOME'],'adolc_base') +- if self.boost_dir is None: +- self.boost_dir = '/usr' +- if self.only_swig is None: +- self.only_swig = False + self.finalized = 1 +- buildobj = self.distribution.get_command_obj('build') +- buildobj.set_undefined_options('install', +- ('lib_prefix','lib_prefix'), +- ('colpack_dir', 'colpack_dir'), +- ('boost_dir', 'boost_dir'), +- ('only_swig', 'only_swig')) + + incdirs = np_dist.get_numpy_include_dirs() + #python_ldflags = subprocess.check_output(['python-config','--ldflags'],universal_newlines=True) +diff --git a/ADOL-C/swig/swigprocess.py b/ADOL-C/swig/swigprocess.py +index bd5fe03d..f9de5551 100644 +--- a/ADOL-C/swig/swigprocess.py ++++ b/ADOL-C/swig/swigprocess.py +@@ -10,6 +10,7 @@ + ## + ############################################################################## + ++from __future__ import print_function + import re + import os.path + import sys +@@ -191,22 +192,25 @@ def finalClean(headfile,outfiles): + for f in glob.glob('*.o'): + os.remove(f) + +-def prepare_flat_header(): +- sys.path = [ os.getcwd() ] + sys.path +- p = os.getcwd() + '/../include/adolc' +- for (dp, dn, fn) in os.walk(p): +- ndp = re.sub(r'\.\./',r'',dp) +- for f in iter(fn): +- lines = readFile(dp + "/" + f) +- lines = comment_all_includes(lines) +- lines = uncomment_local_includes(lines) +- try: +- os.makedirs(ndp) +- except: +- pass +- writeOutput(lines, ndp + "/" + f) ++def prepare_flat_header(src_base='.'): ++ pl = [ os.getcwd() + '/../include/adolc' ] ++ print('src_base = ', src_base) ++ if src_base != '.': ++ pl = [ src_base + '/../include/adolc' ] + pl ++ for p in iter(pl): ++ for (dp, dn, fn) in os.walk(p): ++ ndp = re.sub(r'^.*\.\./',r'',dp) ++ for f in iter(fn): ++ lines = readFile(dp + "/" + f) ++ lines = comment_all_includes(lines) ++ lines = uncomment_local_includes(lines) ++ try: ++ os.makedirs(ndp) ++ except: ++ pass ++ writeOutput(lines, ndp + "/" + f) + +- invoke_cpp('adolc_all_in.hpp', 'adolc_all_pre.hpp') ++ invoke_cpp(src_base + '/' + 'adolc_all_in.hpp', 'adolc_all_pre.hpp') + lines = readFile('adolc_all_pre.hpp') + lines = reinstate_nonlocal_include(lines) + writeOutput(lines,'adolc_all.hpp') +diff --git a/Makefile.am b/Makefile.am +index fb66e9f3..123ac905 100644 +--- a/Makefile.am ++++ b/Makefile.am +@@ -24,13 +24,12 @@ EXTRA_DIST = TODO BUGS LICENSE update_versions.sh \ + ADOL-C/doc/tapebasic.pdf ADOL-C/doc/tapebasic.eps \ + ADOL-C/doc/tap_point.pdf ADOL-C/doc/tap_point.eps \ + MSVisualStudio/v14/adolc.sln MSVisualStudio/v14/adolc.vcxproj \ +- MSVisualStudio/v14/ColPack_Readme_VC++.txt \ + MSVisualStudio/v14/ColPack.vcxproj \ + MSVisualStudio/v14/sparse/config.h.in MSVisualStudio/v14/nosparse/config.h.in \ + MSVisualStudio/v14/x64/sparse/config.h.in MSVisualStudio/v14/x64/nosparse/config.h.in \ + MSVisualStudio/v14/sparse/config.h MSVisualStudio/v14/nosparse/config.h \ + MSVisualStudio/v14/x64/sparse/config.h MSVisualStudio/v14/x64/nosparse/config.h \ +- MSVisualStudio/v14/Readme_VC++.txt \ ++ MSVisualStudio/v14/README_VC++.md \ + MSVisualStudio/v14/installer.sh \ + adolc.spec.in adolc.spec \ + update_versions.sh +diff --git a/configure.ac b/configure.ac +index ddb08de1..6c2c88f9 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -501,6 +501,12 @@ fi + AM_PATH_PYTHON([2.7],[python_found=yes],[python_found=no]) + AC_PATH_PROG(SWIG, swig, [no]) + AM_CONDITIONAL(PYTHONFOUND, [test x$python_found = xyes && test x$SWIG != xno]) ++if test ${abs_top_srcdir} != ${abs_top_builddir} ; then ++ python_srcbase='--src=${abs_srcdir}' ++else ++ python_srcbase='' ++fi ++AC_SUBST(python_srcbase) + ########################################################################### + # COIN_PATCH_LIBTOOL_CYGWIN # + ########################################################################### + +From 25a69c486829ddaa19c115afc05cb7cf3b4e2410 Mon Sep 17 00:00:00 2001 +From: Kshitij Kulshreshtha +Date: Wed, 1 Apr 2020 02:36:12 +0200 +Subject: [PATCH] another small fix for swig, this time for in-tree check + +--- + ADOL-C/swig/setup.py | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/ADOL-C/swig/setup.py b/ADOL-C/swig/setup.py +index e6023679..4ec9a7cc 100644 +--- a/ADOL-C/swig/setup.py ++++ b/ADOL-C/swig/setup.py +@@ -105,7 +105,7 @@ def finalize_options(self): + self.finalized = 1 + + def build_extension(self, ext): +- if self.src != '.': ++ if os.path.abspath(os.path.realpath(self.src)) != os.path.abspath('.'): + import shutil + sources = ext.sources + newSrc = [] +From 0787a350cc181192cfd203b0f75941bcbd9c3e3a Mon Sep 17 00:00:00 2001 +From: Andrea Walther +Date: Tue, 22 Sep 2020 11:58:09 +0200 +Subject: [PATCH] small change in configure.ac for swig module + +--- + configure.ac | 6 ++++++ + 1 file changed, 6 insertions(+) + +diff --git a/configure.ac b/configure.ac +index b6aaeaa7..58380e55 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -509,6 +509,7 @@ if test x$tapedoc_values == xyes; then + AC_DEFINE(ADOLC_TAPE_DOC_VALUES,1,[ADOL-C tape_doc routine computes values]) + fi + ++if test x$adolc_python_support == xyes; then + AM_PATH_PYTHON([2.7],[python_found=yes],[python_found=no]) + AC_PATH_PROG(SWIG, swig, [no]) + AM_CONDITIONAL(PYTHONFOUND, [test x$python_found = xyes && test x$SWIG != xno]) +@@ -517,7 +518,12 @@ if test ${abs_top_srcdir} != ${abs_top_builddir} ; then + else + python_srcbase='' + fi ++else ++ AM_CONDITIONAL(PYTHONFOUND, [test x$adolc_python_support]) ++ python_srcbase='' ++fi + AC_SUBST(python_srcbase) ++end + ########################################################################### + # COIN_PATCH_LIBTOOL_CYGWIN # + ########################################################################### +From 0b3dd1747f90f68b17dc5f1bd3a5d898e3bc77fb Mon Sep 17 00:00:00 2001 +From: Andrea Walther +Date: Wed, 23 Sep 2020 08:54:54 +0200 +Subject: [PATCH] small fixes in configure.ac + +--- + configure.ac | 4 ++-- + 1 file changed, 2 insertions(+), 2 deletions(-) + +diff --git a/configure.ac b/configure.ac +index 58380e55..88671274 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -519,11 +519,11 @@ else + python_srcbase='' + fi + else +- AM_CONDITIONAL(PYTHONFOUND, [test x$adolc_python_support]) ++ AM_CONDITIONAL(PYTHONFOUND, [test x$adolc_python_support = xyes]) + python_srcbase='' + fi + AC_SUBST(python_srcbase) +-end ++ + ########################################################################### + # COIN_PATCH_LIBTOOL_CYGWIN # + ########################################################################### diff --git a/sci-libs/amd/Manifest b/sci-libs/amd/Manifest index f45d468b6609..32b4be8a8aaa 100644 --- a/sci-libs/amd/Manifest +++ b/sci-libs/amd/Manifest @@ -1,3 +1,3 @@ DIST amd-2.4.6.tar.bz2 343925 BLAKE2B 296579d888b61e84ec798206fbb6f89fd923f0d762e84e7a1e2e2a5fb502f4822f89a2a4b631dc42fa829e845bf3980886185650e8de28774400e0c351805061 SHA512 6960a557e6c2f82ca2e68e48ddcb502e1527235a3ca34df2f5f7f63f0f12afacedb15fefe4a39768fe7a2c70308793544b5b24b6f2be2c6b934b0c0e0e796d57 -EBUILD amd-2.4.6.ebuild 782 BLAKE2B 132b5cf2afcb271fb78428144032ce990940d67034c458ba1ca03eaf11fb565f89dd4cb5b9b6c9ec73f08a6779052fd691d6f7c4b3627e9cdc6726b690d3f634 SHA512 41388ed82c77de69ce0dbc1926023b330c32ab45d2503ca6ace21aa2003d37950e77621173e24949af4e679854966d189215d6a729929c282db626b28585ef3a +EBUILD amd-2.4.6.ebuild 781 BLAKE2B b07e0751789864426dc9de9fe7ea21f65f0227e9278ddde3a15755765fbd2b51fcddb3c885490999187529a567e4d8759685e7b46c94cc933ec67ddd1c7bdac5 SHA512 ae9059477e218c250782fe61a3347deac00c2757d31cca26d39560f8d336d3cf1df9a2607f7ebdda373b785bc686710b586fa657eaf255279c357acdc446adf0 MISC metadata.xml 492 BLAKE2B ac6367af33dd797e703e3370d6369db5286b11f862b5387258e9edd860554049c7d9e2bf2186c86e24a7fc29c3f1122f330c0a3cf0420f13085757cff0a388b3 SHA512 1c53658e87337e1e43149c363c901dabfdde52b647891d8026a7ce9ddcd5e36b0121948d169d446e5a78d05c26301bd4f8c7c06665506ebc0999c259b709a6b6 diff --git a/sci-libs/amd/amd-2.4.6.ebuild b/sci-libs/amd/amd-2.4.6.ebuild index 669231443d00..97354db25ab8 100644 --- a/sci-libs/amd/amd-2.4.6.ebuild +++ b/sci-libs/amd/amd-2.4.6.ebuild @@ -11,7 +11,7 @@ SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" LICENSE="BSD" SLOT="0" -KEYWORDS="~alpha amd64 ~arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" +KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" IUSE="doc fortran" BDEPEND="virtual/pkgconfig diff --git a/sci-libs/arpack/Manifest b/sci-libs/arpack/Manifest index adf657e11baf..08587ec525bd 100644 --- a/sci-libs/arpack/Manifest +++ b/sci-libs/arpack/Manifest @@ -1,10 +1,6 @@ -DIST arpack-3.5.0.tar.gz 949853 BLAKE2B fa28090cd745983ee362ab17e0d9f5ab503ec8403f37d38d1263d25ff7849dead7feb10667707aabb3db6d76d9d33397de13cd65fab18a45e7aadd544525cc76 SHA512 67181c783e61d5d2214ccbfa0de8efd55148537feca30376760f7009995694f68c9fc14991306fa19ad67598497510b6e0d42b68dc56dd581dc2a798e3a4b369 DIST arpack-3.7.0.tar.gz 989570 BLAKE2B bdab72f080d223ebbe5a279102d54fc196aac3ad1b8360be0e3814cb5e14e8f26a1f37b4b27b66db4b88b0c651c039666aa94a98fcdb34977feea7fc7d10808c SHA512 cc07cdd1fba4881907b507ff6b6c9bce9e3dadd8ef744194f08ee718a6210c039ac0c51c12edd720503f8e59bcd11c178fc323e1a59696be8c3b8262cf47a452 -DIST arpack-ng_3.1.5.tar.gz 1516406 BLAKE2B 14dea27dbe7d17144871c62db58467642f4602ec479f63b1dcfe67e22b73b146691cb5bb01c90323507a65c499077d0fee3fec0a15c5d654ccca9d3f67975a06 SHA512 4876b0babb89bbcc39e92b63d4537b860e9cd0b8a188937d3ba815041b7261623cdac25c91c8bef20ebce4271f822307c492cf6c9f22ec3d740218405337a515 DIST tutorial.ps.gz 105599 BLAKE2B 99570e6a0cc1c020b9c271e8ce1cc224f69ff5333cc818c10b063dc8ffbaf66a9f5c6ede99541b4212286d422146b1c4e332eba7e1635c99efa0e4c2620f0630 SHA512 a7b8fefd1a572ed477ae208d49094c1c65c9368990d12de9b3528e33fed546c947659f74e54a810d04154b4a1b0f9a94bcba4db0cf59d379e20786a261066aa4 DIST ug.ps.gz 248543 BLAKE2B ac010aef470060636fa00360636ba093f0d24d219fa927c79fb1726b798160eda74fa8b4be6c7dff94f5759efcf30afa99ad310e7959115e028738beb8aa125d SHA512 3349117fb10b07207ffbab2ffa31b406d026855ea4c16e8649b14c7d70bc94e11b5730672e34acd654817799136d4bd76569ac50ec78d787df5582d18ed61328 -EBUILD arpack-3.1.5.ebuild 1550 BLAKE2B 0b18c51eff62ef6f0d25cd4692dfe0c6fe4b7148276427c69aa07eb487596ae624384140cb7d7cfe8939d8edd21ec4c361904220a309a5ca061e92e41faf0f35 SHA512 201b1020fda26b59b2b8c9b989500039a7d73718d4fd9531234f1a20e1972d33ba1ac827139ef0e453452cc6d358c7eabd568b2fab10ca2597d3bc2a473c292b -EBUILD arpack-3.5.0.ebuild 1475 BLAKE2B 280c8b025a95d2f50ae9403c64c68681f40a65d55a25720c6fd5146be664b1b9b6dd46fc8089785e47d023f230a2a5ffe149c6e93e1367b2050bfad9d4d9112e SHA512 932ddcac59c36b5dbf86adc8fb79b73ab4ed7b4090efbd159db524af8e82c6b16c9afbe3d5306345d17a675951d79497f014619663ba40a55f01634e593e6c0f -EBUILD arpack-3.7.0.ebuild 1504 BLAKE2B a9d73824f2ff6a395b933b748b4b4568aabd214e68a8c1a09af87d5f2c114e17be0024915f401ea738800714e20fd211ffd7402b58df0a677b9971a76bce667a SHA512 dff4e79e127fd60ac666a97477e6415b381738317534cd481f9a2676d0b2acdec485324fadb72d5e4bdcc0e7a22710cfec19ee0a0139b1fd996e565262179b7d +EBUILD arpack-3.7.0.ebuild 1498 BLAKE2B d949ed75d793e6158ef2c75169a160c1cc6cf028c1b958341063453ef558d365c153f882ccec5275162403079592480052a3f7e3035573b54017a3a842b6c23e SHA512 345b83614edbaa0f8303da238faf05777c11c44829ff04bf501a8060e85e7dcd4a8f40f44f06bdc13ba414058cac448eb35afdc2cc38ec89649ac923176e6a62 EBUILD arpack-9999.ebuild 1247 BLAKE2B bbbec3f3b0fce5ffc831382cd9257e7db4a2c118cc64ec7954d457dbab5943f546258a61a22f2d2bb3a6617df0b61e26869698c1aba2c0bbb1b871d85b78cedd SHA512 00dba333d657689664eff0120eeaef5f9753d9169ee644004aea7099279c1d443be9c170a9d2ef570d8d2f2be7b795914767547150d95ca1cec17f05eef51fe1 MISC metadata.xml 974 BLAKE2B c9121a0b23acddc3268d4bdbf4537104217a00d09263d29b6cc6f832c87f9a9775f6fab567976078dc1dfa54f2bac627d792b1819a9ea698f3a1534bc52c39da SHA512 c3e094cab53fb61c9acf3eff6ca0c0fc53a71ec135315ba833fbfe6a5ae9481f2b4de5270ccd19ec84cf85dfb18df179e1e234d268eef1af98be218575dcd4bf diff --git a/sci-libs/arpack/arpack-3.1.5.ebuild b/sci-libs/arpack/arpack-3.1.5.ebuild deleted file mode 100644 index e59f0f251e17..000000000000 --- a/sci-libs/arpack/arpack-3.1.5.ebuild +++ /dev/null @@ -1,64 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -#AUTOTOOLS_AUTORECONF=true - -inherit autotools-utils eutils flag-o-matic fortran-2 toolchain-funcs - -MY_P="${PN}-ng_${PV}" - -DESCRIPTION="Arnoldi package library to solve large scale eigenvalue problems" -HOMEPAGE="http://www.caam.rice.edu/software/ARPACK/ http://forge.scilab.org/index.php/p/arpack-ng/" -SRC_URI=" - http://forge.scilab.org/upload/arpack-ng/files/${MY_P}.tar.gz - doc? ( - http://www.caam.rice.edu/software/ARPACK/SRC/ug.ps.gz - http://www.caam.rice.edu/software/ARPACK/DOCS/tutorial.ps.gz )" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="amd64 ~arm hppa ppc ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos" -IUSE="doc examples mpi" - -RDEPEND=" - virtual/blas - virtual/lapack - mpi? ( virtual/mpi[fortran] )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -S="${WORKDIR}/${MY_P/_/-}" - -src_configure() { - tc-export PKG_CONFIG - local myeconfargs=( - --disable-static - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" - --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" - $(use_enable mpi) - ) - autotools-utils_src_configure -} - -src_test() { - cp "${S}"/TESTS/testA.mtx "${BUILD_DIR}"/TESTS || die - autotools-utils_src_test -} - -src_install() { - autotools-utils_src_install - - dodoc DOCUMENTS/*.doc - newdoc DOCUMENTS/README README.doc - use doc && dodoc "${WORKDIR}"/*.ps - if use examples; then - insinto /usr/share/doc/${PF} - doins -r EXAMPLES - if use mpi; then - insinto /usr/share/doc/${PF}/EXAMPLES/PARPACK - doins -r PARPACK/EXAMPLES/MPI - fi - fi -} diff --git a/sci-libs/arpack/arpack-3.5.0.ebuild b/sci-libs/arpack/arpack-3.5.0.ebuild deleted file mode 100644 index fe0ae23d0c28..000000000000 --- a/sci-libs/arpack/arpack-3.5.0.ebuild +++ /dev/null @@ -1,62 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit autotools flag-o-matic fortran-2 toolchain-funcs - -DESCRIPTION="Arnoldi package library to solve large scale eigenvalue problems" -HOMEPAGE="http://www.caam.rice.edu/software/ARPACK/ https://github.com/opencollab/arpack-ng" -SRC_URI=" - https://github.com/opencollab/${PN}-ng/archive/${PV}.tar.gz -> ${P}.tar.gz - doc? ( - http://www.caam.rice.edu/software/ARPACK/SRC/ug.ps.gz - http://www.caam.rice.edu/software/ARPACK/DOCS/tutorial.ps.gz )" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos" -IUSE="doc examples mpi" - -RDEPEND=" - virtual/blas - virtual/lapack - mpi? ( virtual/mpi[fortran] )" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -S="${WORKDIR}/${PN}-ng-${PV}" - -src_prepare() { - default - eautoreconf -} - -src_configure() { - test-flag-FC -fallow-argument-mismatch && - append-fflags -fallow-argument-mismatch - - econf \ - --disable-static \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ - --with-lapack="$($(tc-getPKG_CONFIG) --libs lapack)" \ - $(use_enable mpi) -} - -src_install() { - default - - dodoc DOCUMENTS/*.doc - newdoc DOCUMENTS/README README.doc - use doc && dodoc "${WORKDIR}"/*.ps - if use examples; then - dodoc -r EXAMPLES - if use mpi; then - docinto EXAMPLES/PARPACK - dodoc -r PARPACK/EXAMPLES/MPI - fi - fi - - # no static archives - find "${D}" -name '*.la' -delete || die -} diff --git a/sci-libs/arpack/arpack-3.7.0.ebuild b/sci-libs/arpack/arpack-3.7.0.ebuild index 3ab97b1fd718..20a36754ea12 100644 --- a/sci-libs/arpack/arpack-3.7.0.ebuild +++ b/sci-libs/arpack/arpack-3.7.0.ebuild @@ -15,7 +15,7 @@ SRC_URI=" LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos" +KEYWORDS="amd64 arm arm64 ~hppa ppc ppc64 x86 ~amd64-linux ~x86-linux ~ppc-macos" IUSE="doc examples mpi" RDEPEND=" diff --git a/sci-libs/blas-reference/Manifest b/sci-libs/blas-reference/Manifest deleted file mode 100644 index 960d59563b9a..000000000000 --- a/sci-libs/blas-reference/Manifest +++ /dev/null @@ -1,13 +0,0 @@ -AUX blas-reference-20070226-autotool.patch 4245 BLAKE2B 44edea22832bdf0ee1437901b9271f24acdad7bd3f60d6e537ce63544a8f7e9bb62ab720647a1d6bebda66a92c9ad37df9376d0f7aea1e45393f76e45636b858 SHA512 01abdad5d93466bcfbc832548a57248050d0e362090ba33b497e3e4d5b39cb078cbec44f07f709a90e6e89b9e9eb49f040e9f6b600058044534d4473d2cc3830 -AUX blas-reference-20070226-pkg-config.patch 354 BLAKE2B 8ebda0caa0a3b9af63cb028b93f47285aa7556e24f17ebdb9bc1fddef77dec1f5830c9f16768601f989bc46c28e851a4052b444ffcb9b516e39b81b3718a3ab0 SHA512 0a77eca2435f7bf9c151578d2901ed2e43e150e8c098de99a1bc5829ea4133be57d9bd11b5d1a73beb9d77c36c0252e1ba5c0e8587d6db4f02d549263b4a32f1 -AUX eselect.blas.reference 213 BLAKE2B 885f9450bc688e51602e7e3b7267c0c77a1665b3957378ad2371cdf3faed74196c9351cea133c37026e421a1f6defa9cba0409dc23dd3558744eabca8bbd351e SHA512 c804f7a01aa627df593facb820910485352539bc02c343927870bfd39598cbf1c7ff3af823b66e2c4cf6b7102b90936e5cff35628e0660e8578fb412a1315420 -AUX eselect.blas.reference-r1 213 BLAKE2B 4feaf1275d517575c61bbe8dad52cb9c125ebab465865b6072c539fe98298c3da3393bc5dbf970560dbf96a58394a0d99fd978eb6188ec714fec9500b115d76c SHA512 b4d97d640f5aa34e20234591d8d2d1af488054fd36135df899f1f1345022367478a1013f4e39c8419b6d4ad63d63ac1c65e63c61d880f5322cae731c17fec068 -AUX lapack-reference-3.6.0-fix-build-system.patch 3061 BLAKE2B 22a7be4c561ffd3448810f6fd69ea4e9ae3499432a089ddfb5073038c7f42d2dc05ae15d55a53f341b9016ac77ca4ec8905aee9e8a734c207727fc6081812938 SHA512 db15b9ddde46cb41adf43f060ec46a5cd76a337bc9f3a33bf8ce66c65c7199ecff6e776b53b0ecca5057470a81e7cc470697907d6563462230ff23b1af913d73 -AUX lapack-reference-3.7.0-fix-build-system.patch 1598 BLAKE2B 9128036fc47dae239445162f98d2f7d1d86a5ad6d8c9517879cc4cb58a3d1f0f74b6a70704b2ae5089085cde4acb75bbf82d4aca218b7e7b05cf95f7061e1460 SHA512 3bcd21cc437fa62b1b74ec26908a882e69e413987a2d92832e5c62ed044230b1ac285401c6042c609b2a732320fd660979b812f9279f9eca7bb078ea3fce37b6 -DIST lapack-3.6.0.tgz 6792324 BLAKE2B 438f3376b63b38ef0fe70f6becac847816f3a11c01f5ab237dc0d941792ceb54dbd2f8dc22d56286f5dab3499289ed94e67521ea951a98973c9640abc294ad6c SHA512 bc50441d415ef8896dd7626d77c6104184b996e758704366288089f03d4c99d068e33153b0d13305310886017e5d2e716130f812a95cfcad36ef37fe20417ab8 -DIST lapack-3.7.0.tgz 7359812 BLAKE2B 20aa42e22d8c920d1360afe41ceec7b36f6cd5fbe43ca9d7848ef7cc45a64a0314cb1321941c1a7c03654f41e28ec805445882ded0ca0ea07674e70b66cba6b5 SHA512 e4f4c7d0ba8a096eeb813160c6dbcdd535647df6b2ad5beac9181908158956b31d1a9554ec9b9836fd44fe7404c1f377b297cbb20d744f20d70e357fd246c91b -DIST lapack-lite-3.1.1.tgz 5332509 BLAKE2B 5a8ea98e9956f2bc1fc8dbb1ede18178d43d1f418e324f2798daf2197a2f7f7a1841ea0a0d68f1affa3c9c0a37b024f82222bd2fd6072ca827c70c9c441191c7 SHA512 492b932ef313339ce6b4e63ac8f778489e6870b0eb85f7b086f3c844e75f98e7f85382c7556dfa368ab8320b6f02d1df8ccfcb40b5c0b7c2d74518b7c309e75c -EBUILD blas-reference-20070226-r4.ebuild 1942 BLAKE2B 246d27c0bd496c35df3ec6f89f11526f4a8f218fcc775d849cf6e83ad63f2e8e072fa795cd8d90df16b307364b4cd3ddde9b09462af5821c47a942aa2787c686 SHA512 4f43ec9aa40e8d73886d9b77d529958b524cfcdb6d0f44ce084d91ee351cf1ed75a14a7d6e6119277a2566d1bd6627b201127a1bd7abd9a0796e65c7ecab7c86 -EBUILD blas-reference-20151113-r1.ebuild 2443 BLAKE2B ebf191ba5e0f495e61c38b65c49a86e4658011c199d3f042835b87f1e503ccfc73cc128539a95c7482bfaa7d664bd97ced90a3f1a357e0c31f49dbbae424cfd5 SHA512 91aca3db676aafb985e6ce3591a16363a2ded2f5758d2af56cf1c01d432fa3aad347e74b962b52c4ae993528e3837ca3fffb840852a78fb9da43b465e537f67a -EBUILD blas-reference-20161223.ebuild 2679 BLAKE2B 8cce508ef59b33e6ff6ac50ee14ce0ca5252dbc61820da38349eab2cf3819d658ed89f9f22a284ec77bb2c831707af2a00323ea3f4933b2f0e0450ff9ec8c517 SHA512 dd96d61e86fcea2d01e76ce902ebb45b2e6dc30ea9a737fbdf5b28486c951944b1728f7c135a893fca6645efceb9d2b1633025e261875ea55bb6b1ae8682b241 -MISC metadata.xml 801 BLAKE2B 68ea5978073c01c861253ffd064179a25dc63771c9cabc0b3de200e5333c93a5d55caf8cde1234b643007b690b2a96fa207314117f790b367bd089c997722676 SHA512 78ca8d7459ba5bc81f5f821d9020023d01610d1fd55157bf566890a5c80ff8f83ca1139304319ee41b04f04b559c9e377037c04a1fbdd8dfde3e62f7ca6ff9fe diff --git a/sci-libs/blas-reference/blas-reference-20070226-r4.ebuild b/sci-libs/blas-reference/blas-reference-20070226-r4.ebuild deleted file mode 100644 index bd98acc71819..000000000000 --- a/sci-libs/blas-reference/blas-reference-20070226-r4.ebuild +++ /dev/null @@ -1,69 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils fortran-2 autotools multilib flag-o-matic toolchain-funcs - -LAPACKPV="3.1.1" -LAPACKPN="lapack-lite" - -DESCRIPTION="Basic Linear Algebra Subprograms F77 reference implementations" -HOMEPAGE="http://www.netlib.org/blas/" -SRC_URI="http://www.netlib.org/lapack/${LAPACKPN}-${LAPACKPV}.tgz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha amd64 arm arm64 hppa ~ia64 ~mips ppc ppc64 s390 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos" -IUSE="doc" - -DEPEND="app-eselect/eselect-blas" -RDEPEND="${DEPEND} - doc? ( app-doc/blas-docs )" - -S="${WORKDIR}/${LAPACKPN}-${LAPACKPV}" - -src_prepare() { - ESELECT_PROF=reference - epatch \ - "${FILESDIR}"/${P}-autotool.patch \ - "${FILESDIR}"/${P}-pkg-config.patch - eautoreconf - - cp "${FILESDIR}"/eselect.blas.reference "${T}"/eselect.blas.reference || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.blas.reference || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.blas.reference || die - fi -} - -src_configure() { - econf \ - --libdir="${EPREFIX}"/usr/$(get_libdir)/blas/reference -} - -src_compile() { - emake LDFLAGS="${LDFLAGS}" -} - -src_install() { - default - eselect blas add $(get_libdir) "${T}"/eselect.blas.reference ${ESELECT_PROF} -} - -pkg_postinst() { - local p=blas - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/blas-reference/blas-reference-20151113-r1.ebuild b/sci-libs/blas-reference/blas-reference-20151113-r1.ebuild deleted file mode 100644 index d09263456c11..000000000000 --- a/sci-libs/blas-reference/blas-reference-20151113-r1.ebuild +++ /dev/null @@ -1,89 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 -CMAKE_MAKEFILE_GENERATOR=emake - -inherit eutils fortran-2 cmake-utils multilib flag-o-matic toolchain-funcs - -LPN=lapack -LPV=3.6.0 - -DESCRIPTION="Basic Linear Algebra Subprograms F77 reference implementations" -HOMEPAGE="http://www.netlib.org/blas/" -SRC_URI="http://www.netlib.org/${LPN}/${LPN}-${LPV}.tgz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos" -IUSE="doc" - -RDEPEND=" - app-eselect/eselect-blas - doc? ( app-doc/blas-docs )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -S="${WORKDIR}/${LPN}-${LPV}" -PATCHES=( "${FILESDIR}/lapack-reference-${LPV}-fix-build-system.patch" ) - -src_prepare() { - cmake-utils_src_prepare - - ESELECT_PROF=reference - - cp "${FILESDIR}"/eselect.blas.reference-r1 "${T}"/eselect.blas.reference || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.blas.reference || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.blas.reference || die - fi -} - -src_configure() { - local mycmakeargs=( - -Wno-dev - -DUSE_OPTIMIZED_BLAS=OFF - -DCMAKE_Fortran_FLAGS="$(get_abi_CFLAGS) ${FCFLAGS}" - -DBUILD_SHARED_LIBS=ON - -DBUILD_STATIC_LIBS=ON - ) - - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile -C BLAS -} - -src_test() { - local BUILD_DIR="${WORKDIR}/${P}_build/BLAS" - cmake-utils_src_test -} - -src_install() { - cmake-utils_src_install -C BLAS - - mkdir -p "${ED}/usr/$(get_libdir)/blas/reference" || die - mv "${ED}/usr/$(get_libdir)"/lib* "${ED}/usr/$(get_libdir)/pkgconfig"/* \ - "${ED}/usr/$(get_libdir)/blas/reference" || die - rmdir "${ED}/usr/$(get_libdir)/pkgconfig" || die - - eselect blas add $(get_libdir) "${T}"/eselect.blas.reference ${ESELECT_PROF} -} - -pkg_postinst() { - local p=blas - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/blas-reference/blas-reference-20161223.ebuild b/sci-libs/blas-reference/blas-reference-20161223.ebuild deleted file mode 100644 index 8dda6cc4e151..000000000000 --- a/sci-libs/blas-reference/blas-reference-20161223.ebuild +++ /dev/null @@ -1,96 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 -CMAKE_MAKEFILE_GENERATOR=emake - -inherit eutils fortran-2 cmake-utils multilib flag-o-matic toolchain-funcs - -LPN=lapack -LPV=3.7.0 - -DESCRIPTION="Basic Linear Algebra Subprograms F77 reference implementations" -HOMEPAGE="http://www.netlib.org/blas/" -SRC_URI="http://www.netlib.org/${LPN}/${LPN}-${LPV}.tgz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos" -IUSE="doc" - -RDEPEND=" - app-eselect/eselect-blas - doc? ( app-doc/blas-docs )" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -S="${WORKDIR}/${LPN}-${LPV}" -PATCHES=( "${FILESDIR}/lapack-reference-${LPV}-fix-build-system.patch" ) - -src_prepare() { - cmake-utils_src_prepare - - ESELECT_PROF=reference - - cp "${FILESDIR}"/eselect.blas.reference-r1 "${T}"/eselect.blas.reference || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.blas.reference || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.blas.reference || die - fi -} - -src_configure() { - local mycmakeargs=( - -Wno-dev - -DUSE_OPTIMIZED_BLAS=OFF - -DCMAKE_Fortran_FLAGS="$(get_abi_CFLAGS) ${FCFLAGS}" - -DBUILD_SHARED_LIBS=ON - -DBUILD_STATIC_LIBS=ON - ) - - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile -C BLAS -} - -src_test() { - local BUILD_DIR="${WORKDIR}/${P}_build/BLAS" - cmake-utils_src_test -} - -src_install() { - cmake-utils_src_install -C BLAS - - mkdir -p "${ED}/usr/$(get_libdir)/blas/reference" || die - mv "${ED}/usr/$(get_libdir)"/lib* "${ED}/usr/$(get_libdir)/pkgconfig"/* \ - "${ED}/usr/$(get_libdir)/blas/reference" || die - if [[ ${CHOST} == *-darwin* ]] ; then - # modify install_names accordingly, bug #605214 - local lib - for lib in "${ED}"/usr/$(get_libdir)/blas/reference/*.dylib ; do - install_name_tool -id "${lib#${D%/}}" "${lib}" - done - fi - rmdir "${ED}/usr/$(get_libdir)/pkgconfig" || die - - eselect blas add $(get_libdir) "${T}"/eselect.blas.reference ${ESELECT_PROF} -} - -pkg_postinst() { - local p=blas - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/blas-reference/files/blas-reference-20070226-autotool.patch b/sci-libs/blas-reference/files/blas-reference-20070226-autotool.patch deleted file mode 100644 index 8d8192fc0254..000000000000 --- a/sci-libs/blas-reference/files/blas-reference-20070226-autotool.patch +++ /dev/null @@ -1,243 +0,0 @@ ---- configure.ac 1970-01-01 01:00:00.000000000 +0100 -+++ configure.ac 2007-07-16 10:14:29.000000000 +0100 -@@ -0,0 +1,14 @@ -+AC_PREREQ(2.59) -+AC_INIT(blas, 20070226, lapack@cs.utk.edu) -+AM_INIT_AUTOMAKE([foreign]) -+ -+AC_LANG(Fortran 77) -+AC_PROG_F77 -+AC_PROG_LIBTOOL -+ -+AC_CONFIG_FILES([Makefile -+ BLAS/Makefile -+ BLAS/SRC/Makefile -+ BLAS/TESTING/Makefile -+ BLAS/blas.pc]) -+AC_OUTPUT ---- Makefile.am 1970-01-01 01:00:00.000000000 +0100 -+++ Makefile.am 2007-07-16 01:51:11.000000000 +0100 -@@ -0,0 +1 @@ -+SUBDIRS = BLAS ---- BLAS/Makefile.am 1970-01-01 01:00:00.000000000 +0100 -+++ BLAS/Makefile.am 2007-08-14 11:38:42.000000000 +0100 -@@ -0,0 +1,7 @@ -+SUBDIRS = SRC TESTING -+ -+pkgconfigdir = $(libdir) -+pkgconfig_DATA = blas.pc -+ -+EXTRA = blas.pc -+ ---- BLAS/blas.pc.in 1970-01-01 01:00:00.000000000 +0100 -+++ BLAS/blas.pc.in 2007-08-17 11:38:23.000000000 +0100 -@@ -0,0 +1,11 @@ -+prefix=@prefix@ -+exec_prefix=@exec_prefix@ -+libdir=@libdir@ -+includedir=@includedir@ -+ -+Name: @PACKAGE_NAME@ -+Description: Basic Linear Algebra Subprograms F77 reference implementations -+Version: @PACKAGE_VERSION@ -+URL: http://www.netlib.org/blas -+Libs: -lblas -+Libs.private: -lm ---- BLAS/SRC/Makefile.am 1970-01-01 01:00:00.000000000 +0100 -+++ BLAS/SRC/Makefile.am 2007-07-16 01:50:12.000000000 +0100 -@@ -0,0 +1,153 @@ -+lib_LTLIBRARIES = libblas.la -+ -+libblas_la_SOURCES = \ -+ caxpy.f \ -+ ccopy.f \ -+ cdotc.f \ -+ cdotu.f \ -+ cgbmv.f \ -+ cgemm.f \ -+ cgemv.f \ -+ cgerc.f \ -+ cgeru.f \ -+ chbmv.f \ -+ chemm.f \ -+ chemv.f \ -+ cher2.f \ -+ cher2k.f \ -+ cher.f \ -+ cherk.f \ -+ chpmv.f \ -+ chpr2.f \ -+ chpr.f \ -+ crotg.f \ -+ cscal.f \ -+ csrot.f \ -+ csscal.f \ -+ cswap.f \ -+ csymm.f \ -+ csyr2k.f \ -+ csyrk.f \ -+ ctbmv.f \ -+ ctbsv.f \ -+ ctpmv.f \ -+ ctpsv.f \ -+ ctrmm.f \ -+ ctrmv.f \ -+ ctrsm.f \ -+ ctrsv.f \ -+ dasum.f \ -+ daxpy.f \ -+ dcabs1.f \ -+ dcopy.f \ -+ ddot.f \ -+ dgbmv.f \ -+ dgemm.f \ -+ dgemv.f \ -+ dger.f \ -+ dnrm2.f \ -+ drot.f \ -+ drotg.f \ -+ drotm.f \ -+ drotmg.f \ -+ dsbmv.f \ -+ dscal.f \ -+ dsdot.f \ -+ dspmv.f \ -+ dspr2.f \ -+ dspr.f \ -+ dswap.f \ -+ dsymm.f \ -+ dsymv.f \ -+ dsyr2.f \ -+ dsyr2k.f \ -+ dsyr.f \ -+ dsyrk.f \ -+ dtbmv.f \ -+ dtbsv.f \ -+ dtpmv.f \ -+ dtpsv.f \ -+ dtrmm.f \ -+ dtrmv.f \ -+ dtrsm.f \ -+ dtrsv.f \ -+ dzasum.f \ -+ dznrm2.f \ -+ icamax.f \ -+ idamax.f \ -+ isamax.f \ -+ izamax.f \ -+ lsame.f \ -+ scabs1.f \ -+ sasum.f \ -+ saxpy.f \ -+ scasum.f \ -+ scnrm2.f \ -+ scopy.f \ -+ sdot.f \ -+ sdsdot.f \ -+ sgbmv.f \ -+ sgemm.f \ -+ sgemv.f \ -+ sger.f \ -+ snrm2.f \ -+ srot.f \ -+ srotg.f \ -+ srotm.f \ -+ srotmg.f \ -+ ssbmv.f \ -+ sscal.f \ -+ sspmv.f \ -+ sspr2.f \ -+ sspr.f \ -+ sswap.f \ -+ ssymm.f \ -+ ssymv.f \ -+ ssyr2.f \ -+ ssyr2k.f \ -+ ssyr.f \ -+ ssyrk.f \ -+ stbmv.f \ -+ stbsv.f \ -+ stpmv.f \ -+ stpsv.f \ -+ strmm.f \ -+ strmv.f \ -+ strsm.f \ -+ strsv.f \ -+ xerbla.f \ -+ zaxpy.f \ -+ zcopy.f \ -+ zdotc.f \ -+ zdotu.f \ -+ zdrot.f \ -+ zdscal.f \ -+ zgbmv.f \ -+ zgemm.f \ -+ zgemv.f \ -+ zgerc.f \ -+ zgeru.f \ -+ zhbmv.f \ -+ zhemm.f \ -+ zhemv.f \ -+ zher2.f \ -+ zher2k.f \ -+ zher.f \ -+ zherk.f \ -+ zhpmv.f \ -+ zhpr2.f \ -+ zhpr.f \ -+ zrotg.f \ -+ zscal.f \ -+ zswap.f \ -+ zsymm.f \ -+ zsyr2k.f \ -+ zsyrk.f \ -+ ztbmv.f \ -+ ztbsv.f \ -+ ztpmv.f \ -+ ztpsv.f \ -+ ztrmm.f \ -+ ztrmv.f \ -+ ztrsm.f \ -+ ztrsv.f ---- BLAS/TESTING/Makefile.am 1970-01-01 01:00:00.000000000 +0100 -+++ BLAS/TESTING/Makefile.am 2007-07-16 01:50:12.000000000 +0100 -@@ -0,0 +1,27 @@ -+TESTS = blas_tests -+ -+blas_tests: -+ @install -m0755 blas_tests.sh blas_tests -+ -+check_PROGRAMS = \ -+ xsblat1 xdblat1 xcblat1 xzblat1 \ -+ xsblat2 xdblat2 xcblat2 xzblat2 \ -+ xsblat3 xdblat3 xcblat3 xzblat3 -+ -+LDADD = $(top_builddir)/BLAS/SRC/libblas.la -+ -+xsblat1_SOURCES = sblat1.f -+xdblat1_SOURCES = dblat1.f -+xcblat1_SOURCES = cblat1.f -+xzblat1_SOURCES = zblat1.f -+ -+xsblat2_SOURCES = sblat2.f -+xdblat2_SOURCES = dblat2.f -+xcblat2_SOURCES = cblat2.f -+xzblat2_SOURCES = zblat2.f -+ -+xsblat3_SOURCES = sblat3.f -+xdblat3_SOURCES = dblat3.f -+xcblat3_SOURCES = cblat3.f -+xzblat3_SOURCES = zblat3.f -+ ---- BLAS/TESTING/blas_tests.sh 1970-01-01 01:00:00.000000000 +0100 -+++ BLAS/TESTING/blas_tests.sh 2007-07-16 01:50:12.000000000 +0100 -@@ -0,0 +1,9 @@ -+#!/bin/sh -+ -+for t in cblat1 sblat1 dblat1 zblat1; do -+ ./x${t} -+done -+ -+for t in cblat2 sblat2 dblat2 zblat2 cblat3 sblat3 dblat3 zblat3; do -+ ./x${t} < ../${t}.in -+done diff --git a/sci-libs/blas-reference/files/blas-reference-20070226-pkg-config.patch b/sci-libs/blas-reference/files/blas-reference-20070226-pkg-config.patch deleted file mode 100644 index 14190f41e7d5..000000000000 --- a/sci-libs/blas-reference/files/blas-reference-20070226-pkg-config.patch +++ /dev/null @@ -1,11 +0,0 @@ -diff --git a/BLAS/blas.pc.in b/BLAS/blas.pc.in -index 367c87b..44b86db 100644 ---- a/BLAS/blas.pc.in -+++ b/BLAS/blas.pc.in -@@ -7,5 +7,5 @@ Name: @PACKAGE_NAME@ - Description: Basic Linear Algebra Subprograms F77 reference implementations - Version: @PACKAGE_VERSION@ - URL: http://www.netlib.org/blas --Libs: -lblas -+Libs: -L@libdir@ -lblas - Libs.private: -lm diff --git a/sci-libs/blas-reference/files/eselect.blas.reference b/sci-libs/blas-reference/files/eselect.blas.reference deleted file mode 100644 index edb10ddd10d9..000000000000 --- a/sci-libs/blas-reference/files/eselect.blas.reference +++ /dev/null @@ -1,4 +0,0 @@ -blas/reference/libblas.so /usr/@LIBDIR@/libblas.so -blas/reference/libblas.so.0 /usr/@LIBDIR@/libblas.so.0 -blas/reference/libblas.a /usr/@LIBDIR@/libblas.a -../blas/reference/blas.pc /usr/@LIBDIR@/pkgconfig/blas.pc diff --git a/sci-libs/blas-reference/files/eselect.blas.reference-r1 b/sci-libs/blas-reference/files/eselect.blas.reference-r1 deleted file mode 100644 index f032181beb67..000000000000 --- a/sci-libs/blas-reference/files/eselect.blas.reference-r1 +++ /dev/null @@ -1,4 +0,0 @@ -blas/reference/libblas.so /usr/@LIBDIR@/libblas.so -blas/reference/libblas.so.3 /usr/@LIBDIR@/libblas.so.3 -blas/reference/libblas.a /usr/@LIBDIR@/libblas.a -../blas/reference/blas.pc /usr/@LIBDIR@/pkgconfig/blas.pc diff --git a/sci-libs/blas-reference/files/lapack-reference-3.6.0-fix-build-system.patch b/sci-libs/blas-reference/files/lapack-reference-3.6.0-fix-build-system.patch deleted file mode 100644 index 8661709d369b..000000000000 --- a/sci-libs/blas-reference/files/lapack-reference-3.6.0-fix-build-system.patch +++ /dev/null @@ -1,92 +0,0 @@ ---- lapack-3.6.0/BLAS/blas.pc.in -+++ lapack-3.6.0/BLAS/blas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: blas - Description: Basic Linear Algebra Subprograms F77 reference implementations ---- lapack-3.6.0/BLAS/CMakeLists.txt -+++ lapack-3.6.0/BLAS/CMakeLists.txt -@@ -2,7 +2,7 @@ - if(BUILD_TESTING) - add_subdirectory(TESTING) - endif(BUILD_TESTING) --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/blas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/blas.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/blas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/blas.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/blas.pc - DESTINATION ${PKG_CONFIG_DIR} ---- lapack-3.6.0/CBLAS/cblas.pc.in -+++ lapack-3.6.0/CBLAS/cblas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: lapacke - Description: C Standard Interface to BLAS Linear Algebra PACKage ---- lapack-3.6.0/CBLAS/CMakeLists.txt -+++ lapack-3.6.0/CBLAS/CMakeLists.txt -@@ -71,7 +71,7 @@ - ${LAPACK_BINARY_DIR}/cblas-config.cmake @ONLY) - - --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cblas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/cblas.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cblas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/cblas.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/cblas.pc - DESTINATION ${PKG_CONFIG_DIR} ---- lapack-3.6.0/CMakeLists.txt -+++ lapack-3.6.0/CMakeLists.txt -@@ -333,7 +333,7 @@ - ${LAPACK_BINARY_DIR}/lapack-config.cmake @ONLY) - - --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapack.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapack.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapack.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapack.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/lapack.pc - DESTINATION ${PKG_CONFIG_DIR} ---- lapack-3.6.0/LAPACKE/CMakeLists.txt -+++ lapack-3.6.0/LAPACKE/CMakeLists.txt -@@ -65,7 +65,7 @@ - endif(BUILD_TESTING) - - --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapacke.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapacke.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapacke.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapacke.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/lapacke.pc - DESTINATION ${PKG_CONFIG_DIR} ---- lapack-3.6.0/LAPACKE/lapacke.pc.in -+++ lapack-3.6.0/LAPACKE/lapacke.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: lapacke - Description: C Standard Interface to LAPACK Linear Algebra PACKage ---- lapack-3.6.0/lapack.pc.in -+++ lapack-3.6.0/lapack.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: lapack - Description: FORTRAN reference implementation of LAPACK Linear Algebra PACKage diff --git a/sci-libs/blas-reference/files/lapack-reference-3.7.0-fix-build-system.patch b/sci-libs/blas-reference/files/lapack-reference-3.7.0-fix-build-system.patch deleted file mode 100644 index 70f7cb0ee926..000000000000 --- a/sci-libs/blas-reference/files/lapack-reference-3.7.0-fix-build-system.patch +++ /dev/null @@ -1,56 +0,0 @@ -diff --git a/BLAS/blas.pc.in b/BLAS/blas.pc.in -index 7fd6f1e..e52f3ad 100644 ---- a/BLAS/blas.pc.in -+++ b/BLAS/blas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: BLAS - Description: FORTRAN reference implementation of BLAS Basic Linear Algebra Subprograms -diff --git a/CBLAS/cblas.pc.in b/CBLAS/cblas.pc.in -index 4a938fe..311aed9 100644 ---- a/CBLAS/cblas.pc.in -+++ b/CBLAS/cblas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: CBLAS - Description: C Standard Interface to BLAS Basic Linear Algebra Subprograms -diff --git a/LAPACKE/lapacke.pc.in b/LAPACKE/lapacke.pc.in -index 028f8da..dc092b1 100644 ---- a/LAPACKE/lapacke.pc.in -+++ b/LAPACKE/lapacke.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: LAPACKE - Description: C Standard Interface to LAPACK Linear Algebra PACKage -diff --git a/lapack.pc.in b/lapack.pc.in -index 878efc2..2cca4c2 100644 ---- a/lapack.pc.in -+++ b/lapack.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: LAPACK - Description: FORTRAN reference implementation of LAPACK Linear Algebra PACKage diff --git a/sci-libs/blas-reference/metadata.xml b/sci-libs/blas-reference/metadata.xml deleted file mode 100644 index 1bde80743687..000000000000 --- a/sci-libs/blas-reference/metadata.xml +++ /dev/null @@ -1,17 +0,0 @@ - - - - - sci@gentoo.org - Gentoo Science Project - - -The BLAS (Basic Linear Algebra Subprograms) are high quality "building -block" routines for performing basic vector and matrix operations. Level 1 -BLAS do vector-vector operations, Level 2 BLAS do matrix-vector operations, -and Level 3 BLAS do matrix-matrix operations. Because the BLAS are -efficient, portable, and widely available, they're commonly used in the -development of high quality linear algebra software, LAPACK for -example. This packages implements the reference FORTRAN 77 library. - - diff --git a/sci-libs/brial/Manifest b/sci-libs/brial/Manifest index 4478580092f8..3ae2506db329 100644 --- a/sci-libs/brial/Manifest +++ b/sci-libs/brial/Manifest @@ -1,5 +1,5 @@ +DIST brial-1.2.10.tar.bz2 1229830 BLAKE2B a1cfe4fcd19824d04388bbab1130a9d07e5920fb05ea1686424f1e0193c6f5d29300bba66bdf7ac59665cbceed3f6ff84fbb5a95311858196a0fbdecda5a2cc7 SHA512 163d9f3703271f412d20ec165d713280d9b46c50b66eed0b15385c6d94569e0ea5d7e84c3b6715d51197e97be4062325551402c844f70235a4aa1cebc5e9d3a1 DIST brial-1.2.8.tar.bz2 1228732 BLAKE2B f9bdfc9416381f3436c555861806a7ea4680e706729b6de9c2b06ea2908090b87b745fe5ce2d94ba9d5832a78067e4848f8ef113b7d8dc22557b6d95b7dad707 SHA512 a94acba140d976dd070b5214c537fb3dba89fc2309addc566b8f0a031328f2d4c2bb3c38c2cb5565c7ff2ca0c5f7f56ca120899d15c768887d3b61a18b3e05be -DIST brial-1.2.9.tar.bz2 1230234 BLAKE2B c083931793976deee592e91efcc8ae2fa501c5a2b5cb04fd8449e225c84d5bbe9255480641694e8aac4f299c6ab1800bf21713278d0f8def4a1f335643751cdd SHA512 f5dfcab6b324d1151e06ce3af0f085ebf692d26cd4b38203c835a35a6f0f25d09f6c4a6ebf44b12c3a9c9125dddb2e94a43f1d04b59d07995392b50ada54d410 +EBUILD brial-1.2.10.ebuild 983 BLAKE2B 64e08bbdb530f70243a503e5e243e859c74d6c53961a964a9af3089c2922110653db946a2e512ac37fd5dbfec5107e753c52568d8f70fb98ae1ee6d5168462c6 SHA512 953d52de88b03cacd45dcfe7a77b2a94bc8fdc80f5c81bc212f03b9270f6b006daf63ecc1fffcb0cdd8aeee5f7f4f424d6c27ca30b89eaa57a5dc5f2a777a337 EBUILD brial-1.2.8.ebuild 979 BLAKE2B 1c72e16b99e8f3512b3b16bb4c30525c09772e7702029f43a3b1ad10b7e1d218cf72af004003b867eb486b0731d924ddd1de5edc66eb5f1b28e3f1da924ea596 SHA512 65aa634cb876a4ac84fc04ac33c66157d8c8dd727b88a2018c935be54adebfa4fa9d77ff352933e6731e30c1352b62ff1b68d5b436a823fe9d2e8b0c58983c40 -EBUILD brial-1.2.9.ebuild 983 BLAKE2B 64e08bbdb530f70243a503e5e243e859c74d6c53961a964a9af3089c2922110653db946a2e512ac37fd5dbfec5107e753c52568d8f70fb98ae1ee6d5168462c6 SHA512 953d52de88b03cacd45dcfe7a77b2a94bc8fdc80f5c81bc212f03b9270f6b006daf63ecc1fffcb0cdd8aeee5f7f4f424d6c27ca30b89eaa57a5dc5f2a777a337 MISC metadata.xml 1046 BLAKE2B 34c6f471ca6fbc4538cf3a2dc71bd19d4201656f326166b2589be3126f73f5ff34d190c2ff42154a067457a9da6f05067e782c9dc340357895ca016be6983183 SHA512 550a191f11f7812c363d419e8bed69fdd70e69b3a94e6fba838be9bc04050977edaab34ab0c0ef9c589e6478cdf2d40ba631983f6a2f411e51b9f3964bb48db5 diff --git a/sci-libs/brial/brial-1.2.10.ebuild b/sci-libs/brial/brial-1.2.10.ebuild new file mode 100644 index 000000000000..e1831c017fc6 --- /dev/null +++ b/sci-libs/brial/brial-1.2.10.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs + +DESCRIPTION="A C++ library for polynomials over boolean rings" +HOMEPAGE="https://github.com/BRiAl/BRiAl" +SRC_URI="https://github.com/BRiAl/BRiAl/releases/download/${PV}/${P}.tar.bz2" + +# The top-level license is GPL2+, but cudd/LICENSE is BSD. +LICENSE="BSD GPL-2+" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" +IUSE="png static-libs" + +BDEPEND="virtual/pkgconfig" +DEPEND="dev-libs/boost + sci-libs/m4ri[png=]" +RDEPEND="${DEPEND}" + +pkg_setup(){ + tc-export PKG_CONFIG +} + +src_configure(){ + # with-boost-libdir added to deal with some rather quirky setups + # see https://github.com/cschwan/sage-on-gentoo/issues/551 + econf \ + --with-boost="${EPREFIX}"/usr \ + --with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \ + $(use_enable static-libs static) +} + +src_install(){ + default + find "${ED}" -name '*.la' -delete || die +} diff --git a/sci-libs/brial/brial-1.2.9.ebuild b/sci-libs/brial/brial-1.2.9.ebuild deleted file mode 100644 index e1831c017fc6..000000000000 --- a/sci-libs/brial/brial-1.2.9.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit toolchain-funcs - -DESCRIPTION="A C++ library for polynomials over boolean rings" -HOMEPAGE="https://github.com/BRiAl/BRiAl" -SRC_URI="https://github.com/BRiAl/BRiAl/releases/download/${PV}/${P}.tar.bz2" - -# The top-level license is GPL2+, but cudd/LICENSE is BSD. -LICENSE="BSD GPL-2+" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" -IUSE="png static-libs" - -BDEPEND="virtual/pkgconfig" -DEPEND="dev-libs/boost - sci-libs/m4ri[png=]" -RDEPEND="${DEPEND}" - -pkg_setup(){ - tc-export PKG_CONFIG -} - -src_configure(){ - # with-boost-libdir added to deal with some rather quirky setups - # see https://github.com/cschwan/sage-on-gentoo/issues/551 - econf \ - --with-boost="${EPREFIX}"/usr \ - --with-boost-libdir="${EPREFIX}"/usr/$(get_libdir) \ - $(use_enable static-libs static) -} - -src_install(){ - default - find "${ED}" -name '*.la' -delete || die -} diff --git a/sci-libs/buddy/Manifest b/sci-libs/buddy/Manifest index 499f881e2421..f714e67b22d5 100644 --- a/sci-libs/buddy/Manifest +++ b/sci-libs/buddy/Manifest @@ -1,5 +1,5 @@ AUX buddy-2.4-gcc43.patch 807 BLAKE2B 80434e41ccea232e9833462eac5dfaf028cec7e22e879ca1729c7cfff9a5c83868d898828c3b3d8cdbff584d48e501f4545cb80305c40076d6b2541703b15a03 SHA512 da8069bb467ad1a159036a6d39c8ab5ad75ecf1d69b00b2db8b2de5f279a8cf807fc0f93ae9e0b0b9512d4b33c0889318463e1f34ec10f34415be76ebb1c9a20 AUX buddy-2.4-gold.patch 596 BLAKE2B 255f7b559418d7846dc7f81711d78e7764686a1972477c1579be5c4f0ded5142e7320986b9cfa3399e30c1ac2637c5c0478711df2867791b9dadd83970d941ca SHA512 46f8077fc2c10479b083d3b9cda2905baa8c06739e3de47ebf1535b77229a21811f47f33d5de1431ea634e97baa9950496ab46bc69974830f1f13a1c2e2444ee DIST buddy-2.4.tar.gz 766523 BLAKE2B ab640fe6ccde38b8c5b9b6e344a94c605f6c3f12992e13350bbf547367cb074ec07b76b3d2b9d9d4d87f3604b24fe8b4961a8634f51f6c25bb004118188ece3f SHA512 43984969359ac363141ee8a67538ceeae1412efa172432a8355f6ce68ab5ffab12470ad7a2e0d7a6a557b8bf55e98b2f2dc5cc6710466403d45fab2195ba2e23 -EBUILD buddy-2.4-r1.ebuild 707 BLAKE2B 3223a7c2f4f71626ac12af5c8fe6cfa5403082e577470f029e4417fd625d2c3663a1a65f2fdecfbb286695d38dacb25a320a89e82f8935d24a650e731122c7bc SHA512 3b1f8f9db8f7946de4b518c7dc62abe0b111cdafca153ac7426ac6dfb5c1f856357bcaf6d7d962d6160960373ab27fd27ceb30a6fa7f131de97d5f8e6590eee7 +EBUILD buddy-2.4-r1.ebuild 797 BLAKE2B d8f8b97269da5aad3f0cec9578e41eb85d68c85cfa9f8ee06012e9ee77ec7e14b93e48317af903fdc834ff3c5b54a3fc1ef09f98081eed5c9e5a7315f1935c3a SHA512 baea0c3806cdce6534ad49e2b878f1e082b4d1f3933249a9615f06584be9934907b5111c074f8498ce2ecc51a6a7fde0ecb218fa7cfef024752509d6fab526fc MISC metadata.xml 606 BLAKE2B f2921b1718f4c72d5f9f10c21fb2ff23485653629db025bd9eb97acc40b0aa2db3a82034c1577cd7244290d263fd5b9678dff3ae19241932653679bb34879cc0 SHA512 b89f749637d1b732bb8bb6ce33d8ca9445e388ee6bf0870e01781a3eec0a8a4bb3fe88c0ed618b0e3a4f2c793655fa3ba3184d84857754782b5c2a777f3f847a diff --git a/sci-libs/buddy/buddy-2.4-r1.ebuild b/sci-libs/buddy/buddy-2.4-r1.ebuild index c5dfddbbe1e1..004107ea6cf6 100644 --- a/sci-libs/buddy/buddy-2.4-r1.ebuild +++ b/sci-libs/buddy/buddy-2.4-r1.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 inherit fortran-2 @@ -12,7 +12,7 @@ SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" LICENSE="buddy" SLOT="0" KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos" -IUSE="doc examples static-libs" +IUSE="doc examples" DOCS=( doc/tech.txt ) PATCHES=( @@ -21,16 +21,21 @@ PATCHES=( ) src_configure() { - econf $(use_enable static-libs static) + econf --disable-static } src_install() { default - - use doc && docinto ps && dodoc doc/*.ps + find "${ED}" -name '*.la' -delete || die if use examples; then - insinto /usr/share/${PN}/ - doins -r examples + find examples/ -name 'Makefile*' -delete || die + + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples + fi + if use doc; then + docinto ps + dodoc doc/*.ps fi } diff --git a/sci-libs/camd/Manifest b/sci-libs/camd/Manifest index 70a6cdaaf4f2..2242bd9e8f1e 100644 --- a/sci-libs/camd/Manifest +++ b/sci-libs/camd/Manifest @@ -1,3 +1,3 @@ DIST camd-2.4.6.tar.bz2 317071 BLAKE2B 8f982050a20f00c9443063a0473caa4aa27efe005fe07b503cb68b29499152561fc9d30d00783607b1e8fb8af88707eabfe22d192b80e375b8a6d04d7a9a26d7 SHA512 c4020ed3e063d04f5d7d1a301719b1a5b5b912d505858f046654c9d283c41ff01d55f668fb7f7179a6ac636f5a5b80f71cac5eb5b1e5cae0ede97d946d62a1d0 -EBUILD camd-2.4.6.ebuild 729 BLAKE2B bdc951c763877fe0dc0fa73d6ba0a1deaaa5379917ee0e385e0478a632e481e2263c8276eb3c559ac4196bde3a9275723249e54883d64e311cff697f0e5838ca SHA512 f74c783ec10f374ef67ad9c8e32112b60804a7bc7e179928bf960647001041c77588bb456a4ecb577a64713fa27d86059429b1e01174e89164b6a5c9667f46c2 +EBUILD camd-2.4.6.ebuild 728 BLAKE2B 1df7960dd020411c35ab57e1ce0500cd3ef887891ae7774e5a544e5af9bdfc46b02252b06cbc5ad8c6a4e943cbb3c9b9477630b52224e3d31d94a738198c22c1 SHA512 8b9cb89601700474ad4f8eb22ced91a270f62a7cb406430a38d115bb4b5fc160f4cd6f9ef7e6a2c65c86e5cee1922e325013b34acf90e70618a96e3b78231aa8 MISC metadata.xml 494 BLAKE2B 456f4ab539ab7303849cfabfda3e07987874a833e5691d6c3336ebb8a86cc6d5cc5fe8c20b65d8e5fdd8da1c947b9e7ff8eedfd2cc17da6040ff5d109b1b110d SHA512 6402783aec0922669bbf45477074644a9b10f44b0b06bf86ad9b4ecbab124076ee7f19c2c68c6eb3bf21a1569a3410f1ed0ac12f653dd5808559da133613d09f diff --git a/sci-libs/camd/camd-2.4.6.ebuild b/sci-libs/camd/camd-2.4.6.ebuild index 4ac1627a0b35..b2702e44ebc6 100644 --- a/sci-libs/camd/camd-2.4.6.ebuild +++ b/sci-libs/camd/camd-2.4.6.ebuild @@ -9,7 +9,7 @@ SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" LICENSE="BSD" SLOT="0" -KEYWORDS="~alpha amd64 ~arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" +KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" IUSE="doc" BDEPEND="virtual/pkgconfig diff --git a/sci-libs/cantera/Manifest b/sci-libs/cantera/Manifest index 51c4f60a2de6..264a01cf4562 100644 --- a/sci-libs/cantera/Manifest +++ b/sci-libs/cantera/Manifest @@ -4,5 +4,5 @@ AUX cantera_2.4.0_env_python_install_prefix.patch 943 BLAKE2B 06bc4ac2cc4aaa2123 AUX cantera_2.4.0_sundials4.patch 8410 BLAKE2B dbee09305610bb0d74c1569d694782194c0cb3daf06b581fa385021faed9d54d8f900747bdcac64b0322dcc82fee20bc330b71bee1aa90fe9df68efc335427b7 SHA512 ec4b80b761c3d18cc03bb87ec59b7c860b6818c3a5503f3f7c759f0bfde7cc6c5ded3c64294f9844e28a649754f4a1c158738bc5a7c923bd4808a78c6a59c91a DIST cantera-2.4.0.tar.gz 2321316 BLAKE2B 40750e3864afa3d35817e6f5777a6ac235261e9d134ef749966dbd738a2af5efec2882e6dcc719851f88656b41469e2159d3bff3df32f6abdf57db3b0a2afcae SHA512 8bb0fee34fa5bc9ec78e6f21a100eaa77bdd966bd0b7f0fa27d452e4f122c69e61648beef847178490f5c5d56267a96f6081cac9ccd03cea153c32814e0e84e9 EBUILD cantera-2.4.0-r4.ebuild 3028 BLAKE2B cacb43b61a63aba2ae8a55393ff8f0ea93c0bbea9266f182d3ac270e822b09a16865da60076e6ea059bc1c684c9a13e7291f3aed037ca2fa79c48d0844fd5051 SHA512 c3f361945f1d4756f8251fc3122a4b8ba36e5f5723c4d71742f8d089a41614669ecaf5462a8e2d5945b09611eda3a98f4d91736ca253202c44d1a6fd6cb22705 -EBUILD cantera-2.4.0-r5.ebuild 3072 BLAKE2B 44b04260688a25de14ad1bd53bc5831f4f3354bc0b9cda0c857f86456b7d64e644284e7748ac0949cc5a5b50e3c297bedfdd6f162621eeb8c5d32f3570e318d7 SHA512 a4f702e5a7f4e8bf7c1147bd6a96d2bc51ef99a7c60691deb1f24fd07a78ca8cfb6427a0758912611793272c58a8bf87d66dcaa47b888dc0a3204729c0bb8ecf +EBUILD cantera-2.4.0-r5.ebuild 3071 BLAKE2B e4a48b20a7446b1f521d2542c111f40603e708aef5940bee16447070cf00fd20e4f73778d054e33e68b92b0ae028dc8fbd89b0817367dcbeb96bc51305f13488 SHA512 0422fdea1f33a1e50aa6ec771234a87929c0827add0afc7cc2618db0cf275657b33d9f7aa95064eda4f2508d2cf7c5015c92d036058dda1838bd45d3b41cf68e MISC metadata.xml 794 BLAKE2B 4a92fb553aad7d87d4b7a8d77974dbd67d593b4010783f96324979d9c01067bccc60d2faedf604bd8d44a8ac4316356879301899af8bc08d0fcd548df6d3762d SHA512 a9e6f4e161519d0b3618fe8da7065195bc760ba889fa4356358d4047ea1970eb5fd78bdc5fbeb7c660f1bee48a68ab20ced636514e6f12848e88f6f4dabc9705 diff --git a/sci-libs/cantera/cantera-2.4.0-r5.ebuild b/sci-libs/cantera/cantera-2.4.0-r5.ebuild index ac2a89b4ddd4..509fa30f426c 100644 --- a/sci-libs/cantera/cantera-2.4.0-r5.ebuild +++ b/sci-libs/cantera/cantera-2.4.0-r5.ebuild @@ -16,7 +16,7 @@ SRC_URI="https://github.com/Cantera/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64 ~x86" +KEYWORDS="amd64 ~x86" IUSE="+cti fortran pch +python test" RESTRICT="!test? ( test )" diff --git a/sci-libs/cartopy/Manifest b/sci-libs/cartopy/Manifest index 9848b2dc4d11..7b54d6051855 100644 --- a/sci-libs/cartopy/Manifest +++ b/sci-libs/cartopy/Manifest @@ -1,3 +1,3 @@ DIST cartopy-0.18.0.tar.gz 14191937 BLAKE2B bb10791ef2534dad404cc492e378161a4a078813b09d6e2c16d0d465c7dcfbaa7f24d3818cfe0f1f46e7683bdf2e00440640534835ce064492d5321489e355bc SHA512 912d5ab57c96b9e6c51b3ad26f94d77e495eb9c3a8fb8a68bdd957c11b1bc8a3ddc97e76e0d8a5ec9afca9302b01fe5753f4208ec3829df8741ee0ebbaafe30f -EBUILD cartopy-0.18.0.ebuild 1675 BLAKE2B 3159117c6844415b01d8943e51676cf010095de759391243176e3255ffd134c5b5f0d28921c513c3052a35096025ac0df25080d499519fc040d0a6e41ab05dbd SHA512 2dbc3396e318a336834dc8512747673463342b789f7f81a2fba45dfa31ec7332ae031d7f2d137d1687e22ad918029e47d3dca4db45273296191b9e3a7390540c +EBUILD cartopy-0.18.0.ebuild 1675 BLAKE2B 24883ad6128afb55d51980fc7af6d2a7b2230928a6806da4c09079471ada2a0af9a5ad40bcee3864c390eafd752e1dc9766c2219dcb5b9d30fdaf0e4bf92baa8 SHA512 c7f2fb3a2307f59a8b0a0b257f0364a67319b2feb6b586c27467ec8d7457b0af842a1e10babd52e01d43fb52ba124f01b21d3af92829e15ca8f62f95789dd629 MISC metadata.xml 602 BLAKE2B 92e179b5503c84c6e567e7adb48917ca6140a7c04a0f5613b5aa3a9c19623d61abed95c325b41ca0d5a99b046c2891511796de49c3117c4ce9c969069bb2c5f0 SHA512 8677cb5685dee0b5868c1b14ffc13ac93e3b26ab741ceb684c7c48caf02f159a7a6613402e0396b9b0bc256c39b6446cbb7779521324447d96ed524fb8ca664d diff --git a/sci-libs/cartopy/cartopy-0.18.0.ebuild b/sci-libs/cartopy/cartopy-0.18.0.ebuild index bc9c5426b8f1..d4fd00b90fcd 100644 --- a/sci-libs/cartopy/cartopy-0.18.0.ebuild +++ b/sci-libs/cartopy/cartopy-0.18.0.ebuild @@ -24,7 +24,7 @@ RDEPEND=" ${PYTHON_DEPS} dev-python/numpy[${PYTHON_USEDEP}] sci-libs/pyshp[${PYTHON_USEDEP}] - sci-libs/Shapely[${PYTHON_USEDEP}] + sci-libs/shapely[${PYTHON_USEDEP}] dev-python/six[${PYTHON_USEDEP}] dev-python/matplotlib[${PYTHON_USEDEP}] dev-python/scipy[${PYTHON_USEDEP}] diff --git a/sci-libs/cblas-reference/Manifest b/sci-libs/cblas-reference/Manifest deleted file mode 100644 index 1106f5b034e6..000000000000 --- a/sci-libs/cblas-reference/Manifest +++ /dev/null @@ -1,12 +0,0 @@ -AUX cblas-reference-20030223-autotool.patch 13378 BLAKE2B 6f66209755c9443b3732538af11848f5d1edbfdd0ad0464c1a2d11903adecf9ad4c28d7f7138ceda74d5a20e96b1c498d7351cc5e722f2f6fd822b13feac4235 SHA512 45d07414acd5251d162ccc2b3f8f126665e110348797f97df472ba38ecce46c3c91359d3f37a83f9763f756246e04b5756710ea0e2d2a74b4485968707262393 -AUX eselect.cblas.reference 256 BLAKE2B 086304a537ed2fe060c10c96cf5b799ea6954f5640ffe820a5ee8e740828a742544682d1d053c779f5ea9f02692c56a24546a8dfc57a857be46a1ae46e30a2ed SHA512 91728a7a56ef3f46c85a302e484f3173a63a58af003e64ec8ecfc2c77a75b8cedac4d6e9fba4ea6a6096bb71547ee8157c6059faa762fd90d4583a9025e569c0 -AUX eselect.cblas.reference-r2 481 BLAKE2B 4dc8b6c70ad60123dcfe66fd79f521720c9835a1880893efc2da98d2c7af12bb0e25ae3a25fd316e559a21e7848bed0a6af9749f3dc2c3f8aeb2043d8993d3cd SHA512 2aa8c08a8305ae7c9270325b8ed248045f937caeb081ae7ea59c6722f62bc8cbed9710084cd47fbb8ce96a1bc5b8876790e1bffdaed7e183033b4f2e2450efbd -AUX lapack-reference-3.6.0-fix-build-system.patch 4215 BLAKE2B 4968da98f2e2885c9dda1165efea51fe71daf7985f96eb36adf945f7e8ee5f1b87c13e614ead4239deed2c098562587fd0a980883c5edd03def876d9978987c3 SHA512 5cd571de7f7f0af2e02643d4d47681a2acef3d1cd70d76ffe19c344c6c444d3d1902438a3c4462064cedea0386872c2f7c181b63dadcce952ec9b3bdc44dbb2a -AUX lapack-reference-3.7.0-fix-build-system.patch 1598 BLAKE2B 9128036fc47dae239445162f98d2f7d1d86a5ad6d8c9517879cc4cb58a3d1f0f74b6a70704b2ae5089085cde4acb75bbf82d4aca218b7e7b05cf95f7061e1460 SHA512 3bcd21cc437fa62b1b74ec26908a882e69e413987a2d92832e5c62ed044230b1ac285401c6042c609b2a732320fd660979b812f9279f9eca7bb078ea3fce37b6 -DIST cblas.tgz 197694 BLAKE2B a9a6feff0198cc62b2a9fd75740e9cebbecd36adff7a1fb3ea57942846d428dcbdb9b266d4510b67bc077b13fe833c063e4784278755513c3abddc66884f5e36 SHA512 8edc4f939d36e6bb9bcbc4ffe414b6c991192ef2e76ec4eda16d3578591185d31e46be5e747d74c740411db6bd2c2d414a18f73193d4a288e8c7e4b83cb0895d -DIST lapack-3.6.0.tgz 6792324 BLAKE2B 438f3376b63b38ef0fe70f6becac847816f3a11c01f5ab237dc0d941792ceb54dbd2f8dc22d56286f5dab3499289ed94e67521ea951a98973c9640abc294ad6c SHA512 bc50441d415ef8896dd7626d77c6104184b996e758704366288089f03d4c99d068e33153b0d13305310886017e5d2e716130f812a95cfcad36ef37fe20417ab8 -DIST lapack-3.7.0.tgz 7359812 BLAKE2B 20aa42e22d8c920d1360afe41ceec7b36f6cd5fbe43ca9d7848ef7cc45a64a0314cb1321941c1a7c03654f41e28ec805445882ded0ca0ea07674e70b66cba6b5 SHA512 e4f4c7d0ba8a096eeb813160c6dbcdd535647df6b2ad5beac9181908158956b31d1a9554ec9b9836fd44fe7404c1f377b297cbb20d744f20d70e357fd246c91b -EBUILD cblas-reference-20030223-r6.ebuild 1839 BLAKE2B 4c0d138ed5d2c1e46b2a350bf030f999fa99d05cd6584309947db85087cda505bb25a21a8f4fe3fbc24e17a96e8a013dc8952a7ae286b75ab9daef0d787aa8b1 SHA512 d8372f5d73f2166359596e8ca271aa4798bc12083e57c692e57fde951bfccc01d800b679f1a236ce5eb5960d453b59159773bada3dc63c78ee3dcecceafc6d08 -EBUILD cblas-reference-20151113-r2.ebuild 2634 BLAKE2B 40af8c3d632edae615a825040bbbd319f91ad186aca1916003dbfe88df29af20aaf4074ac83cb7e4556ac01b01c482f283063865b5afac2d7e02f4e35fb4e4b2 SHA512 d48b02af0a0db8ea90fb5fdcf00d4a7605162ef0f04e6ad70d042feb9fdb4816d41d2bcdff097fdd51df3145b38977cca4c6a9544fd4ec5cd7afeab702797d34 -EBUILD cblas-reference-20161223.ebuild 2641 BLAKE2B 3ac89dc9764fb98b8165832201c5d0643c2f807294eb4ab95b865557b06eee3885504885be9f3516b026677422345c4113c5ec3a80fb9e713a504094c4ac17fb SHA512 62247d478a4187d8b972471b5227e6e6e567feb74806bd271096f98a883a321e2471a53f4905a3206611b22117e6fd00004fd522fc8fc713cc9810b83a1e29fd -MISC metadata.xml 836 BLAKE2B b355702b31b2de0e8c98cbd84338da58a19821c32b2e9cc039e0ea2f6a416be88ba4b4480b1f769c1311b1902092b8cfbe218ad67d48863932961a99b1ef15d2 SHA512 5e3394b15042b221806f47a96bc5b1bb09a004f9dc30639595c6a3264c7c92af3fec769b87a1702eba2f8a7c06580e7c62cbe22577ce93e35886c9db1aa309b3 diff --git a/sci-libs/cblas-reference/cblas-reference-20030223-r6.ebuild b/sci-libs/cblas-reference/cblas-reference-20030223-r6.ebuild deleted file mode 100644 index 7b8572d844d3..000000000000 --- a/sci-libs/cblas-reference/cblas-reference-20030223-r6.ebuild +++ /dev/null @@ -1,66 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit autotools eutils fortran-2 multilib toolchain-funcs - -MyPN="${PN/-reference/}" - -DESCRIPTION="C wrapper interface to the F77 reference BLAS implementation" -HOMEPAGE="http://www.netlib.org/blas/" -SRC_URI="http://www.netlib.org/blas/blast-forum/${MyPN}.tgz" - -SLOT="0" -LICENSE="public-domain" -IUSE="" -KEYWORDS="~alpha amd64 hppa ppc ppc64 s390 sparc x86 ~amd64-linux ~x86-linux ~x64-macos" - -RDEPEND=" - virtual/blas - app-eselect/eselect-cblas" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -ESELECT_PROF=reference -S="${WORKDIR}/CBLAS" - -src_prepare() { - epatch "${FILESDIR}"/${P}-autotool.patch - eautoreconf - - cp "${FILESDIR}"/eselect.cblas.reference "${T}"/ || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.cblas.reference || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.cblas.reference || die - fi -} - -src_configure() { - econf \ - --libdir="${EPREFIX}"/usr/$(get_libdir)/blas/reference \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" -} - -src_install() { - default - dodoc cblas_example*c - eselect cblas add $(get_libdir) "${T}"/eselect.cblas.reference ${ESELECT_PROF} -} - -pkg_postinst() { - local p=cblas - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/cblas-reference/cblas-reference-20151113-r2.ebuild b/sci-libs/cblas-reference/cblas-reference-20151113-r2.ebuild deleted file mode 100644 index f3dd39de4338..000000000000 --- a/sci-libs/cblas-reference/cblas-reference-20151113-r2.ebuild +++ /dev/null @@ -1,93 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 -CMAKE_MAKEFILE_GENERATOR=emake - -inherit eutils fortran-2 cmake-utils multilib flag-o-matic toolchain-funcs - -LPN=lapack -LPV=3.6.0 - -DESCRIPTION="C wrapper interface to the F77 reference BLAS implementation" -HOMEPAGE="http://www.netlib.org/cblas/" -SRC_URI="http://www.netlib.org/${LPN}/${LPN}-${LPV}.tgz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~hppa ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos" -IUSE="" - -DEPEND="app-eselect/eselect-cblas - >=virtual/blas-3.6 - virtual/pkgconfig" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/${LPN}-${LPV}" -PATCHES=( "${FILESDIR}/lapack-reference-${LPV}-fix-build-system.patch" ) - -src_prepare() { - cmake-utils_src_prepare - - ESELECT_PROF=reference - - cp "${FILESDIR}"/eselect.cblas.reference-r2 "${T}"/eselect.cblas.reference || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.cblas.reference || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.cblas.reference || die - fi - - sed -i \ - -e 's:/CMAKE/:/cmake/:g' \ - CBLAS/CMakeLists.txt || die -} - -src_configure() { - local mycmakeargs=( - -Wno-dev - -DCBLAS=ON - -DUSE_OPTIMIZED_BLAS=ON - -DBLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas)" - -DCMAKE_C_FLAGS="$($(tc-getPKG_CONFIG) --cflags blas) ${CFLAGS}" - -DCMAKE_Fortran_FLAGS="$($(tc-getPKG_CONFIG) --cflags blas) $(get_abi_CFLAGS) ${FCFLAGS}" - -DBUILD_SHARED_LIBS=ON - -DBUILD_STATIC_LIBS=ON - ) - - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile -C CBLAS -} - -src_install() { - cmake-utils_src_install -C CBLAS - - mkdir -p "${ED}/usr/$(get_libdir)/blas/reference" || die - mv "${ED}/usr/$(get_libdir)"/lib* "${ED}/usr/include"/cblas* \ - "${ED}/usr/$(get_libdir)/pkgconfig"/* \ - "${ED}/usr/$(get_libdir)/blas/reference" || die - - rmdir "${ED}/usr/$(get_libdir)/pkgconfig" || die - rmdir "${ED}/usr/include" || die - - eselect cblas add $(get_libdir) "${T}"/eselect.cblas.reference ${ESELECT_PROF} -} - -pkg_postinst() { - local p=cblas - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/cblas-reference/cblas-reference-20161223.ebuild b/sci-libs/cblas-reference/cblas-reference-20161223.ebuild deleted file mode 100644 index 839759b7cde4..000000000000 --- a/sci-libs/cblas-reference/cblas-reference-20161223.ebuild +++ /dev/null @@ -1,93 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 -CMAKE_MAKEFILE_GENERATOR=emake - -inherit eutils fortran-2 cmake-utils multilib flag-o-matic toolchain-funcs - -LPN=lapack -LPV=3.7.0 - -DESCRIPTION="C wrapper interface to the F77 reference BLAS implementation" -HOMEPAGE="http://www.netlib.org/cblas/" -SRC_URI="http://www.netlib.org/${LPN}/${LPN}-${LPV}.tgz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm64 ~hppa ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~x64-macos" -IUSE="" - -DEPEND="app-eselect/eselect-cblas - >=virtual/blas-3.6 - virtual/pkgconfig" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/${LPN}-${LPV}" -PATCHES=( "${FILESDIR}/lapack-reference-${LPV}-fix-build-system.patch" ) - -src_prepare() { - cmake-utils_src_prepare - - ESELECT_PROF=reference - - cp "${FILESDIR}"/eselect.cblas.reference-r2 "${T}"/eselect.cblas.reference || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.cblas.reference || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.cblas.reference || die - fi - - sed -i \ - -e 's:/CMAKE/:/cmake/:g' \ - CBLAS/CMakeLists.txt || die -} - -src_configure() { - local mycmakeargs=( - -Wno-dev - -DCBLAS=ON - -DUSE_OPTIMIZED_BLAS=ON - -DBLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas)" - -DCMAKE_C_FLAGS="$($(tc-getPKG_CONFIG) --cflags blas) ${CFLAGS}" - -DCMAKE_Fortran_FLAGS="$($(tc-getPKG_CONFIG) --cflags blas) $(get_abi_CFLAGS) ${FCFLAGS}" - -DBUILD_SHARED_LIBS=ON - -DBUILD_STATIC_LIBS=ON - ) - - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile -C CBLAS -} - -src_install() { - cmake-utils_src_install -C CBLAS - - mkdir -p "${ED}/usr/$(get_libdir)/blas/reference" || die - mv "${ED}/usr/$(get_libdir)"/lib* "${ED}/usr/include"/cblas* \ - "${ED}/usr/$(get_libdir)/pkgconfig"/* \ - "${ED}/usr/$(get_libdir)/blas/reference" || die - - rmdir "${ED}/usr/$(get_libdir)/pkgconfig" || die - rmdir "${ED}/usr/include" || die - - eselect cblas add $(get_libdir) "${T}"/eselect.cblas.reference ${ESELECT_PROF} -} - -pkg_postinst() { - local p=cblas - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/cblas-reference/files/cblas-reference-20030223-autotool.patch b/sci-libs/cblas-reference/files/cblas-reference-20030223-autotool.patch deleted file mode 100644 index 0dd595bf4a21..000000000000 --- a/sci-libs/cblas-reference/files/cblas-reference-20030223-autotool.patch +++ /dev/null @@ -1,567 +0,0 @@ ---- configure.ac 1970-01-01 01:00:00.000000000 +0100 -+++ configure.ac 2007-11-09 17:59:16.000000000 +0000 -@@ -0,0 +1,24 @@ -+AC_PREREQ(2.59) -+AC_INIT(cblas, 20030223, lapack@cs.utk.edu) -+AC_CONFIG_SRCDIR([cblas_example2.c]) -+AC_CONFIG_HEADER([config.h]) -+AM_INIT_AUTOMAKE([foreign]) -+ -+AC_LANG(C) -+AC_PROG_CC -+AC_PROG_F77 -+AC_F77_LIBRARY_LDFLAGS -+AC_PROG_LIBTOOL -+ -+sinclude(acx_blas.m4) -+ACX_BLAS -+if test x"$BLAS_LIBS" = x; then -+ AC_MSG_ERROR([Cannot find blas libraries]) -+fi -+ -+ -+AC_CONFIG_FILES([Makefile -+ src/Makefile -+ testing/Makefile -+ cblas.pc]) -+AC_OUTPUT ---- Makefile.am 1970-01-01 01:00:00.000000000 +0100 -+++ Makefile.am 2007-11-09 16:20:41.000000000 +0000 -@@ -0,0 +1,8 @@ -+SUBDIRS = src testing -+ -+pkgconfigdir = $(libdir) -+pkgconfig_DATA = cblas.pc -+ -+EXTRA = cblas.pc -+ -+ ---- cblas.pc.in 1970-01-01 01:00:00.000000000 +0100 -+++ cblas.pc.in 2007-11-09 16:20:41.000000000 +0000 -@@ -0,0 +1,13 @@ -+prefix=@prefix@ -+exec_prefix=@exec_prefix@ -+libdir=@libdir@ -+includedir=@includedir@ -+ -+Name: @PACKAGE_NAME@ -+Description: Basic Linear Algebra Subprograms C reference wrapper -+Version: @PACKAGE_VERSION@ -+Requires: blas -+URL: http://www.netlib.org/blas/ -+Libs: -lcblas -+Libs.private: @FLIBS@ -+Cflags: -I${includedir} ---- acx_blas.m4 1970-01-01 01:00:00.000000000 +0100 -+++ acx_blas.m4 2007-08-04 22:50:48.000000000 +0100 -@@ -0,0 +1,191 @@ -+##### http://autoconf-archive.cryp.to/acx_blas.html -+# -+# SYNOPSIS -+# -+# ACX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) -+# -+# DESCRIPTION -+# -+# This macro looks for a library that implements the BLAS -+# linear-algebra interface (see http://www.netlib.org/blas/). On -+# success, it sets the BLAS_LIBS output variable to hold the -+# requisite library linkages. -+# -+# To link with BLAS, you should link with: -+# -+# $BLAS_LIBS $LIBS $FLIBS -+# -+# in that order. FLIBS is the output variable of the -+# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by ACX_BLAS), and -+# is sometimes necessary in order to link with F77 libraries. Users -+# will also need to use AC_F77_DUMMY_MAIN (see the autoconf manual), -+# for the same reason. -+# -+# Many libraries are searched for, from ATLAS to CXML to ESSL. The -+# user may also use --with-blas= in order to use some specific -+# BLAS library . In order to link successfully, however, be -+# aware that you will probably need to use the same Fortran compiler -+# (which can be set via the F77 env. var.) as was used to compile the -+# BLAS library. -+# -+# ACTION-IF-FOUND is a list of shell commands to run if a BLAS -+# library is found, and ACTION-IF-NOT-FOUND is a list of commands to -+# run it if it is not found. If ACTION-IF-FOUND is not specified, the -+# default action will define HAVE_BLAS. -+# -+# This macro requires autoconf 2.50 or later. -+# -+# LAST MODIFICATION -+# -+# 2007-07-29 -+# -+# COPYLEFT -+# -+# Copyright (c) 2007 Steven G. Johnson -+# -+# This program is free software: you can redistribute it and/or -+# modify it under the terms of the GNU General Public License as -+# published by the Free Software Foundation, either version 3 of the -+# License, or (at your option) any later version. -+# -+# This program is distributed in the hope that it will be useful, but -+# WITHOUT ANY WARRANTY; without even the implied warranty of -+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -+# General Public License for more details. -+# -+# You should have received a copy of the GNU General Public License -+# along with this program. If not, see -+# . -+# -+# As a special exception, the respective Autoconf Macro's copyright -+# owner gives unlimited permission to copy, distribute and modify the -+# configure scripts that are the output of Autoconf when processing -+# the Macro. You need not follow the terms of the GNU General Public -+# License when using or distributing such scripts, even though -+# portions of the text of the Macro appear in them. The GNU General -+# Public License (GPL) does govern all other use of the material that -+# constitutes the Autoconf Macro. -+# -+# This special exception to the GPL applies to versions of the -+# Autoconf Macro released by the Autoconf Macro Archive. When you -+# make and distribute a modified version of the Autoconf Macro, you -+# may extend this special exception to the GPL to apply to your -+# modified version as well. -+ -+AC_DEFUN([ACX_BLAS], [ -+AC_PREREQ(2.50) -+AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS]) -+acx_blas_ok=no -+ -+AC_ARG_WITH(blas, -+ [AC_HELP_STRING([--with-blas=], [use BLAS library ])]) -+case $with_blas in -+ yes | "") ;; -+ no) acx_blas_ok=disable ;; -+ -* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;; -+ *) BLAS_LIBS="-l$with_blas" ;; -+esac -+ -+# Get fortran linker names of BLAS functions to check for. -+AC_F77_FUNC(sgemm) -+AC_F77_FUNC(dgemm) -+ -+acx_blas_save_LIBS="$LIBS" -+LIBS="$LIBS $FLIBS" -+ -+# First, check BLAS_LIBS environment variable -+if test $acx_blas_ok = no; then -+if test "x$BLAS_LIBS" != x; then -+ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS" -+ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS]) -+ AC_TRY_LINK_FUNC($sgemm, [acx_blas_ok=yes], [BLAS_LIBS=""]) -+ AC_MSG_RESULT($acx_blas_ok) -+ LIBS="$save_LIBS" -+fi -+fi -+ -+# BLAS linked to by default? (happens on some supercomputers) -+if test $acx_blas_ok = no; then -+ save_LIBS="$LIBS"; LIBS="$LIBS" -+ AC_CHECK_FUNC($sgemm, [acx_blas_ok=yes]) -+ LIBS="$save_LIBS" -+fi -+ -+# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/) -+if test $acx_blas_ok = no; then -+ AC_CHECK_LIB(atlas, ATL_xerbla, -+ [AC_CHECK_LIB(f77blas, $sgemm, -+ [AC_CHECK_LIB(cblas, cblas_dgemm, -+ [acx_blas_ok=yes -+ BLAS_LIBS="-lcblas -lf77blas -latlas"], -+ [], [-lf77blas -latlas])], -+ [], [-latlas])]) -+fi -+ -+# BLAS in PhiPACK libraries? (requires generic BLAS lib, too) -+if test $acx_blas_ok = no; then -+ AC_CHECK_LIB(blas, $sgemm, -+ [AC_CHECK_LIB(dgemm, $dgemm, -+ [AC_CHECK_LIB(sgemm, $sgemm, -+ [acx_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"], -+ [], [-lblas])], -+ [], [-lblas])]) -+fi -+ -+# BLAS in Alpha CXML library? -+if test $acx_blas_ok = no; then -+ AC_CHECK_LIB(cxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-lcxml"]) -+fi -+ -+# BLAS in Alpha DXML library? (now called CXML, see above) -+if test $acx_blas_ok = no; then -+ AC_CHECK_LIB(dxml, $sgemm, [acx_blas_ok=yes;BLAS_LIBS="-ldxml"]) -+fi -+ -+# BLAS in Sun Performance library? -+if test $acx_blas_ok = no; then -+ if test "x$GCC" != xyes; then # only works with Sun CC -+ AC_CHECK_LIB(sunmath, acosp, -+ [AC_CHECK_LIB(sunperf, $sgemm, -+ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath" -+ acx_blas_ok=yes],[],[-lsunmath])]) -+ fi -+fi -+ -+# BLAS in SCSL library? (SGI/Cray Scientific Library) -+if test $acx_blas_ok = no; then -+ AC_CHECK_LIB(scs, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lscs"]) -+fi -+ -+# BLAS in SGIMATH library? -+if test $acx_blas_ok = no; then -+ AC_CHECK_LIB(complib.sgimath, $sgemm, -+ [acx_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"]) -+fi -+ -+# BLAS in IBM ESSL library? (requires generic BLAS lib, too) -+if test $acx_blas_ok = no; then -+ AC_CHECK_LIB(blas, $sgemm, -+ [AC_CHECK_LIB(essl, $sgemm, -+ [acx_blas_ok=yes; BLAS_LIBS="-lessl -lblas"], -+ [], [-lblas $FLIBS])]) -+fi -+ -+# Generic BLAS library? -+if test $acx_blas_ok = no; then -+ AC_CHECK_LIB(blas, $sgemm, [acx_blas_ok=yes; BLAS_LIBS="-lblas"]) -+fi -+ -+AC_SUBST(BLAS_LIBS) -+ -+LIBS="$acx_blas_save_LIBS" -+ -+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: -+if test x"$acx_blas_ok" = xyes; then -+ ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1]) -+ : -+else -+ acx_blas_ok=no -+ $2 -+fi -+])dnl ACX_BLAS ---- src/Makefile.am 1970-01-01 01:00:00.000000000 +0100 -+++ src/Makefile.am 2007-11-09 16:20:41.000000000 +0000 -@@ -0,0 +1,232 @@ -+lib_LTLIBRARIES = libcblas.la -+ -+pkgincludedir = $(includedir)/cblas -+pkginclude_HEADERS = cblas.h -+ -+AM_CPPFLAGS = -DADD_ -+ -+ERRHAND_SOURCES = \ -+ cblas_globals.c \ -+ cblas_xerbla.c \ -+ xerbla.c -+ -+SINGLE_SOURCES = \ -+ cblas_scasum.c \ -+ cblas_scnrm2.c \ -+ scasumsub.f \ -+ scnrm2sub.f -+ -+SLEV_SOURCES = \ -+ isamaxsub.f \ -+ sdotsub.f \ -+ sdsdotsub.f \ -+ snrm2sub.f \ -+ sasumsub.f -+ -+SLEV1_SOURCES = \ -+ cblas_srotg.c \ -+ cblas_srotmg.c \ -+ cblas_srot.c \ -+ cblas_srotm.c \ -+ cblas_sswap.c \ -+ cblas_sscal.c \ -+ cblas_scopy.c \ -+ cblas_saxpy.c \ -+ cblas_sdot.c \ -+ cblas_sdsdot.c \ -+ cblas_snrm2.c \ -+ cblas_sasum.c \ -+ cblas_isamax.c -+ -+SLEV2_SOURCES = \ -+ cblas_sgemv.c \ -+ cblas_sgbmv.c \ -+ cblas_sger.c \ -+ cblas_ssbmv.c \ -+ cblas_sspmv.c \ -+ cblas_sspr.c \ -+ cblas_sspr2.c \ -+ cblas_ssymv.c \ -+ cblas_ssyr.c \ -+ cblas_ssyr2.c \ -+ cblas_stbmv.c \ -+ cblas_stbsv.c \ -+ cblas_stpmv.c \ -+ cblas_stpsv.c \ -+ cblas_strmv.c \ -+ cblas_strsv.c -+ -+SLEV3_SOURCES = \ -+ cblas_sgemm.c \ -+ cblas_ssymm.c \ -+ cblas_ssyrk.c \ -+ cblas_ssyr2k.c \ -+ cblas_strmm.c \ -+ cblas_strsm.c -+ -+DLEV_SOURCES = \ -+ ddotsub.f \ -+ dsdotsub.f \ -+ dnrm2sub.f \ -+ dasumsub.f \ -+ idamaxsub.f -+ -+DLEV1_SOURCES = \ -+ cblas_drotg.c \ -+ cblas_drotmg.c \ -+ cblas_drot.c \ -+ cblas_drotm.c \ -+ cblas_dswap.c \ -+ cblas_dscal.c \ -+ cblas_dcopy.c \ -+ cblas_daxpy.c \ -+ cblas_ddot.c \ -+ cblas_dsdot.c \ -+ cblas_dnrm2.c \ -+ cblas_dasum.c \ -+ cblas_idamax.c -+ -+DLEV2_SOURCES = \ -+ cblas_dgemv.c \ -+ cblas_dgbmv.c \ -+ cblas_dger.c \ -+ cblas_dsbmv.c \ -+ cblas_dspmv.c \ -+ cblas_dspr.c \ -+ cblas_dspr2.c \ -+ cblas_dsymv.c \ -+ cblas_dsyr.c \ -+ cblas_dsyr2.c \ -+ cblas_dtbmv.c \ -+ cblas_dtbsv.c \ -+ cblas_dtpmv.c \ -+ cblas_dtpsv.c \ -+ cblas_dtrmv.c \ -+ cblas_dtrsv.c -+ -+DLEV3_SOURCES = \ -+ cblas_dgemm.c \ -+ cblas_dsymm.c \ -+ cblas_dsyrk.c \ -+ cblas_dsyr2k.c \ -+ cblas_dtrmm.c \ -+ cblas_dtrsm.c -+ -+CLEV_SOURCES = \ -+ cdotcsub.f \ -+ cdotusub.f \ -+ icamaxsub.f -+ -+CLEV1_SOURCES = \ -+ cblas_cswap.c \ -+ cblas_cscal.c \ -+ cblas_csscal.c \ -+ cblas_ccopy.c \ -+ cblas_caxpy.c \ -+ cblas_cdotu_sub.c \ -+ cblas_cdotc_sub.c \ -+ cblas_icamax.c -+ -+CLEV2_SOURCES = \ -+ cblas_cgemv.c \ -+ cblas_cgbmv.c \ -+ cblas_chemv.c \ -+ cblas_chbmv.c \ -+ cblas_chpmv.c \ -+ cblas_ctrmv.c \ -+ cblas_ctbmv.c \ -+ cblas_ctpmv.c \ -+ cblas_ctrsv.c \ -+ cblas_ctbsv.c \ -+ cblas_ctpsv.c \ -+ cblas_cgeru.c \ -+ cblas_cgerc.c \ -+ cblas_cher.c \ -+ cblas_cher2.c \ -+ cblas_chpr.c \ -+ cblas_chpr2.c -+ -+CLEV3_SOURCES = \ -+ cblas_cgemm.c \ -+ cblas_csymm.c \ -+ cblas_chemm.c \ -+ cblas_cherk.c \ -+ cblas_cher2k.c \ -+ cblas_ctrmm.c \ -+ cblas_ctrsm.c \ -+ cblas_csyrk.c \ -+ cblas_csyr2k.c -+ -+ZLEV_SOURCES = \ -+ zdotcsub.f \ -+ zdotusub.f \ -+ dzasumsub.f \ -+ dznrm2sub.f \ -+ izamaxsub.f -+ -+ZLEV1_SOURCES = \ -+ cblas_zswap.c \ -+ cblas_zscal.c \ -+ cblas_zdscal.c \ -+ cblas_zcopy.c \ -+ cblas_zaxpy.c \ -+ cblas_zdotu_sub.c \ -+ cblas_zdotc_sub.c \ -+ cblas_dznrm2.c \ -+ cblas_dzasum.c \ -+ cblas_izamax.c -+ -+ZLEV2_SOURCES = \ -+ cblas_zgemv.c \ -+ cblas_zgbmv.c \ -+ cblas_zhemv.c \ -+ cblas_zhbmv.c \ -+ cblas_zhpmv.c \ -+ cblas_ztrmv.c \ -+ cblas_ztbmv.c \ -+ cblas_ztpmv.c \ -+ cblas_ztrsv.c \ -+ cblas_ztbsv.c \ -+ cblas_ztpsv.c \ -+ cblas_zgeru.c \ -+ cblas_zgerc.c \ -+ cblas_zher.c \ -+ cblas_zher2.c \ -+ cblas_zhpr.c \ -+ cblas_zhpr2.c -+ -+ZLEV3_SOURCES = \ -+ cblas_zgemm.c \ -+ cblas_zsymm.c \ -+ cblas_zhemm.c \ -+ cblas_zherk.c \ -+ cblas_zher2k.c \ -+ cblas_ztrmm.c \ -+ cblas_ztrsm.c \ -+ cblas_zsyrk.c \ -+ cblas_zsyr2k.c -+ -+libcblas_la_SOURCES = \ -+ cblas_f77.h \ -+ cblas.h \ -+ $(ERRHAND_SOURCES) \ -+ $(SINGLE_SOURCES) \ -+ $(SLEV_SOURCES) \ -+ $(DLEV_SOURCES) \ -+ $(CLEV_SOURCES) \ -+ $(ZLEV_SOURCES) \ -+ $(SLEV1_SOURCES) \ -+ $(DLEV1_SOURCES) \ -+ $(CLEV1_SOURCES) \ -+ $(ZLEV1_SOURCES) \ -+ $(SLEV2_SOURCES) \ -+ $(DLEV2_SOURCES) \ -+ $(CLEV2_SOURCES) \ -+ $(ZLEV2_SOURCES) \ -+ $(SLEV3_SOURCES) \ -+ $(DLEV3_SOURCES) \ -+ $(CLEV3_SOURCES) \ -+ $(ZLEV3_SOURCES) -+ -+libcblas_la_LIBADD = @BLAS_LIBS@ -+ ---- testing/Makefile.am 1970-01-01 01:00:00.000000000 +0100 -+++ testing/Makefile.am 2007-11-09 17:20:37.000000000 +0000 -@@ -0,0 +1,70 @@ -+TESTS = cblas_tests -+ -+cblas_tests: -+ @install -m0755 cblas_tests.sh cblas_tests -+ -+check_PROGRAMS = \ -+ xscblat1 xdcblat1 xccblat1 xzcblat1 \ -+ xscblat2 xdcblat2 xccblat2 xzcblat2 \ -+ xscblat3 xdcblat3 xccblat3 xzcblat3 -+ -+LDADD = $(top_builddir)/src/libcblas.la @BLAS_LIBS@ -+ -+AM_CPPFLAGS = -I$(top_srcdir)/src -DADD_ -+ -+AUX_SOURCES = \ -+ auxiliary.c \ -+ c_xerbla.c -+ -+xscblat1_SOURCES = \ -+ c_sblas1.c \ -+ c_sblat1.f -+xscblat2_SOURCES = \ -+ c_sblas2.c \ -+ c_s2chke.c \ -+ c_sblat2.f \ -+ $(AUX_SOURCES) -+xscblat3_SOURCES = \ -+ c_sblas3.c \ -+ c_s3chke.c \ -+ c_sblat3.f \ -+ $(AUX_SOURCES) -+xdcblat1_SOURCES = \ -+ c_dblas1.c \ -+ c_dblat1.f -+xdcblat2_SOURCES = \ -+ c_dblas2.c \ -+ c_d2chke.c \ -+ c_dblat2.f \ -+ $(AUX_SOURCES) -+xdcblat3_SOURCES = \ -+ c_dblas3.c \ -+ c_d3chke.c \ -+ c_dblat3.f \ -+ $(AUX_SOURCES) -+xccblat1_SOURCES = \ -+ c_cblas1.c \ -+ c_cblat1.f -+xccblat2_SOURCES = \ -+ c_cblas2.c \ -+ c_c2chke.c \ -+ c_cblat2.f \ -+ $(AUX_SOURCES) -+xccblat3_SOURCES = \ -+ c_cblas3.c \ -+ c_c3chke.c \ -+ c_cblat3.f \ -+ $(AUX_SOURCES) -+xzcblat1_SOURCES = \ -+ c_zblas1.c \ -+ c_zblat1.f -+xzcblat2_SOURCES = \ -+ c_zblas2.c \ -+ c_z2chke.c \ -+ c_zblat2.f \ -+ $(AUX_SOURCES) -+xzcblat3_SOURCES = \ -+ c_zblas3.c \ -+ c_z3chke.c \ -+ c_zblat3.f \ -+ $(AUX_SOURCES) ---- testing/cblas_tests.sh 1970-01-01 01:00:00.000000000 +0100 -+++ testing/cblas_tests.sh 2007-11-09 16:20:41.000000000 +0000 -@@ -0,0 +1,8 @@ -+#!/bin/sh -+ -+for t in x*blat1; do -+ ./${t} -+done -+for t in x*blat{2,3}; do -+ ./${t} < ${t:1:1}in${t:7:1} -+done diff --git a/sci-libs/cblas-reference/files/eselect.cblas.reference b/sci-libs/cblas-reference/files/eselect.cblas.reference deleted file mode 100644 index 62b581860fc7..000000000000 --- a/sci-libs/cblas-reference/files/eselect.cblas.reference +++ /dev/null @@ -1,5 +0,0 @@ -blas/reference/libcblas.so /usr/@LIBDIR@/libcblas.so -blas/reference/libcblas.so.0 /usr/@LIBDIR@/libcblas.so.0 -blas/reference/libcblas.a /usr/@LIBDIR@/libcblas.a -../blas/reference/cblas.pc /usr/@LIBDIR@/pkgconfig/cblas.pc -cblas/cblas.h /usr/include/cblas.h diff --git a/sci-libs/cblas-reference/files/eselect.cblas.reference-r2 b/sci-libs/cblas-reference/files/eselect.cblas.reference-r2 deleted file mode 100644 index b02188c8a9da..000000000000 --- a/sci-libs/cblas-reference/files/eselect.cblas.reference-r2 +++ /dev/null @@ -1,8 +0,0 @@ -blas/reference/libcblas.so /usr/@LIBDIR@/libcblas.so -blas/reference/libcblas.so.3 /usr/@LIBDIR@/libcblas.so.3 -blas/reference/libcblas.a /usr/@LIBDIR@/libcblas.a -../blas/reference/cblas.pc /usr/@LIBDIR@/pkgconfig/cblas.pc -../@LIBDIR@/blas/reference/cblas_test.h /usr/include/cblas_test.h -../@LIBDIR@/blas/reference/cblas_mangling.h /usr/include/cblas_mangling.h -../@LIBDIR@/blas/reference/cblas_f77.h /usr/include/cblas_f77.h -../@LIBDIR@/blas/reference/cblas.h /usr/include/cblas.h diff --git a/sci-libs/cblas-reference/files/lapack-reference-3.6.0-fix-build-system.patch b/sci-libs/cblas-reference/files/lapack-reference-3.6.0-fix-build-system.patch deleted file mode 100644 index a187dac21a12..000000000000 --- a/sci-libs/cblas-reference/files/lapack-reference-3.6.0-fix-build-system.patch +++ /dev/null @@ -1,124 +0,0 @@ - BLAS/CMakeLists.txt | 2 +- - BLAS/blas.pc.in | 6 ++++-- - CBLAS/CMakeLists.txt | 2 +- - CBLAS/cblas.pc.in | 9 ++++++--- - CMakeLists.txt | 2 +- - LAPACKE/CMakeLists.txt | 2 +- - LAPACKE/lapacke.pc.in | 6 ++++-- - lapack.pc.in | 6 ++++-- - 8 files changed, 22 insertions(+), 13 deletions(-) - -diff --git a/BLAS/CMakeLists.txt b/BLAS/CMakeLists.txt -index 45e68e9..56c8354 100644 ---- a/BLAS/CMakeLists.txt -+++ b/BLAS/CMakeLists.txt -@@ -2,7 +2,7 @@ add_subdirectory(SRC) - if(BUILD_TESTING) - add_subdirectory(TESTING) - endif(BUILD_TESTING) --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/blas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/blas.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/blas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/blas.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/blas.pc - DESTINATION ${PKG_CONFIG_DIR} -diff --git a/BLAS/blas.pc.in b/BLAS/blas.pc.in -index 845a25c..7a53ea5 100644 ---- a/BLAS/blas.pc.in -+++ b/BLAS/blas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: blas - Description: Basic Linear Algebra Subprograms F77 reference implementations -diff --git a/CBLAS/CMakeLists.txt b/CBLAS/CMakeLists.txt -index 98b481f..8f98b04 100644 ---- a/CBLAS/CMakeLists.txt -+++ b/CBLAS/CMakeLists.txt -@@ -71,7 +71,7 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/CMAKE/cblas-config-build.cmake.in - ${LAPACK_BINARY_DIR}/cblas-config.cmake @ONLY) - - --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cblas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/cblas.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cblas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/cblas.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/cblas.pc - DESTINATION ${PKG_CONFIG_DIR} -diff --git a/CBLAS/cblas.pc.in b/CBLAS/cblas.pc.in -index ee20206..14a141e 100644 ---- a/CBLAS/cblas.pc.in -+++ b/CBLAS/cblas.pc.in -@@ -1,9 +1,12 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include/@PROFNAME@ - --Name: lapacke -+Name: cblas-reference - Description: C Standard Interface to BLAS Linear Algebra PACKage - Version: @LAPACK_VERSION@ - URL: http://www.netlib.org/lapack/ - Libs: -L${libdir} -lcblas -+Cflags: -I${includedir} - Requires: blas -diff --git a/CMakeLists.txt b/CMakeLists.txt -index ab29bd2..31b878a 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -333,7 +333,7 @@ configure_file(${LAPACK_SOURCE_DIR}/CMAKE/lapack-config-build.cmake.in - ${LAPACK_BINARY_DIR}/lapack-config.cmake @ONLY) - - --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapack.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapack.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapack.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapack.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/lapack.pc - DESTINATION ${PKG_CONFIG_DIR} -diff --git a/LAPACKE/CMakeLists.txt b/LAPACKE/CMakeLists.txt -index 008f24c..d8c4cb0 100644 ---- a/LAPACKE/CMakeLists.txt -+++ b/LAPACKE/CMakeLists.txt -@@ -65,7 +65,7 @@ if(BUILD_TESTING) - endif(BUILD_TESTING) - - --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapacke.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapacke.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapacke.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapacke.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/lapacke.pc - DESTINATION ${PKG_CONFIG_DIR} -diff --git a/LAPACKE/lapacke.pc.in b/LAPACKE/lapacke.pc.in -index 75e6871..ce5201b 100644 ---- a/LAPACKE/lapacke.pc.in -+++ b/LAPACKE/lapacke.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: lapacke - Description: C Standard Interface to LAPACK Linear Algebra PACKage -diff --git a/lapack.pc.in b/lapack.pc.in -index d34c870..0d0750f 100644 ---- a/lapack.pc.in -+++ b/lapack.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: lapack - Description: FORTRAN reference implementation of LAPACK Linear Algebra PACKage diff --git a/sci-libs/cblas-reference/files/lapack-reference-3.7.0-fix-build-system.patch b/sci-libs/cblas-reference/files/lapack-reference-3.7.0-fix-build-system.patch deleted file mode 100644 index 70f7cb0ee926..000000000000 --- a/sci-libs/cblas-reference/files/lapack-reference-3.7.0-fix-build-system.patch +++ /dev/null @@ -1,56 +0,0 @@ -diff --git a/BLAS/blas.pc.in b/BLAS/blas.pc.in -index 7fd6f1e..e52f3ad 100644 ---- a/BLAS/blas.pc.in -+++ b/BLAS/blas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: BLAS - Description: FORTRAN reference implementation of BLAS Basic Linear Algebra Subprograms -diff --git a/CBLAS/cblas.pc.in b/CBLAS/cblas.pc.in -index 4a938fe..311aed9 100644 ---- a/CBLAS/cblas.pc.in -+++ b/CBLAS/cblas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: CBLAS - Description: C Standard Interface to BLAS Basic Linear Algebra Subprograms -diff --git a/LAPACKE/lapacke.pc.in b/LAPACKE/lapacke.pc.in -index 028f8da..dc092b1 100644 ---- a/LAPACKE/lapacke.pc.in -+++ b/LAPACKE/lapacke.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: LAPACKE - Description: C Standard Interface to LAPACK Linear Algebra PACKage -diff --git a/lapack.pc.in b/lapack.pc.in -index 878efc2..2cca4c2 100644 ---- a/lapack.pc.in -+++ b/lapack.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: LAPACK - Description: FORTRAN reference implementation of LAPACK Linear Algebra PACKage diff --git a/sci-libs/cblas-reference/metadata.xml b/sci-libs/cblas-reference/metadata.xml deleted file mode 100644 index f77724cb6a54..000000000000 --- a/sci-libs/cblas-reference/metadata.xml +++ /dev/null @@ -1,18 +0,0 @@ - - - - - sci@gentoo.org - Gentoo Science Project - - -The BLAS (Basic Linear Algebra Subprograms) are high quality "building -block" routines for performing basic vector and matrix operations. Level 1 -BLAS do vector-vector operations, Level 2 BLAS do matrix-vector operations, -and Level 3 BLAS do matrix-matrix operations. Because the BLAS are -efficient, portable, and widely available, they're commonly used in the -development of high quality linear algebra software, LAPACK for -example. This packages implements the reference C library as a wrapper -to the FORTRAN 77 BLAS library. - - diff --git a/sci-libs/ccolamd/Manifest b/sci-libs/ccolamd/Manifest index 70b8ccca5d5c..4c6c329064a9 100644 --- a/sci-libs/ccolamd/Manifest +++ b/sci-libs/ccolamd/Manifest @@ -1,3 +1,3 @@ DIST ccolamd-2.9.6.tar.bz2 305744 BLAKE2B 0d741ead328a1e888715672ddb617cc96a559f46f2379e1d7792b70868dd290de19b3047e3ed4dd2711084c9afc523d18ecb375aa4ee8a4a12950cee08f238b8 SHA512 cf6f210d26ddb1be454cac377a773b73b75261a74e1e3985565f57f45659b1c11b747829c5bbe99c4bc3e8b364d7b2b3c109e00f6d7e8e41afd713312ebf103c -EBUILD ccolamd-2.9.6.ebuild 658 BLAKE2B a77a7f597a078d61762ce0294fd8d6f0d95662dfddefd09306bc5112e1f9fb6382a6da6bd72608f9a187949c2dcb81777d86baf6621a2ca1ccedbc9b155d3ae9 SHA512 0cad34fb75ad6c534c2fdc4f9aacb04d625e9448b8c77a4b7bc47befa5a144e1d510ea66d076024e75af128a4fef9d86d8c3ca43549201d8b3fee30a971f26e8 +EBUILD ccolamd-2.9.6.ebuild 657 BLAKE2B 30b23d3d98ce5908705e29aca518dde2a2ba0716362718412858b87e7be306104f44a0fb5a9eed006aac712be57c402533a73ec88cbc47416b6c7db92c2f7dd4 SHA512 7b2e76c60b8969e8421953d137b129fb90576226afbc0b858b3793412b7212f6523edeb95f069141d009c4e18ec412efd4621a2c8f2f2a94ce28a44cec07ac53 MISC metadata.xml 470 BLAKE2B b20ae7c51907e135898a4ca6eee1454c1760d8f6c061d6d8c9bdf6082773e003326c65ba4489831139bc9af96f2321a09b22fbe106aa87b8f6dbb4781163edb9 SHA512 99c2d290fea618dfd8997209d8e6db971a2ab74d1be5fb270f2177c9843b0f324710491977c7cf2427806295d05e341ece4399afd8a0d43bca8b42b0fdea7beb diff --git a/sci-libs/ccolamd/ccolamd-2.9.6.ebuild b/sci-libs/ccolamd/ccolamd-2.9.6.ebuild index 592a43771f56..34fa1fbb8b4f 100644 --- a/sci-libs/ccolamd/ccolamd-2.9.6.ebuild +++ b/sci-libs/ccolamd/ccolamd-2.9.6.ebuild @@ -9,7 +9,7 @@ SRC_URI="http://202.36.178.9/sage//${P}.tar.bz2" LICENSE="BSD" SLOT="0" -KEYWORDS="~alpha amd64 ~arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" +KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" BDEPEND="virtual/pkgconfig" DEPEND="sci-libs/suitesparseconfig" diff --git a/sci-libs/cholmod/Manifest b/sci-libs/cholmod/Manifest index df4fb4d66876..c2153f563fb8 100644 --- a/sci-libs/cholmod/Manifest +++ b/sci-libs/cholmod/Manifest @@ -1,6 +1,8 @@ AUX cholmod-1.7.4-parmetis32.patch 702 BLAKE2B 241d68fa25ac2ab3f9a425702559736fb15657eda82c5ba0a413174c146c09e0be167746f866a64189d027892d180445adcf92f55fc913c9bff0085f87051c94 SHA512 a1694a7f42f10c7619e23817e93f76df35bc208200918b74a6dd68bb4662d57ce2f3665be424ad4b5c8a4ea9c3957676c48716aa0e47d9fb19337dc43e759ecc DIST cholmod-2.1.2.tar.bz2 656458 BLAKE2B 83a574ad7d3755428d8d732f3f60b07908b8315d73d5a3d3aaf9aac50b54590c532389dd90efc569e67639993095706eb546e72313b735e35af34a1fea398be2 SHA512 7aca97de4c60ff2d7a76a776be4c2d61243a159a51b9e147fa2480f2aaf61a5d966eb0f1cb57c0145510437f6c478fa30384b741709d0a02432b74ada3e78089 DIST cholmod-3.0.13.tar.bz2 696002 BLAKE2B 40a065fe1a3585897b3ca554a25fa80ffc68ac70798f2f803e34a231ec4f532d113a3d00ab7ab61f5eb02503a84e1459cdb7e96cb0b0d1dc6975ed3d533104fe SHA512 c6c80d099386bac27e385a1b8ee8941cd2fb4f2dcfcf302b4b17d6477ac9ee17ad8030aae9191f92576dfaeb521e2c98ec24e867281c2405e42f95580e14f0ab +DIST cholmod-3.0.14.tar.bz2 696981 BLAKE2B 855927c18833235b3f0835bfba455d83957b9161c0ee885c2d31d126f0f473067f55bcf2cfa163c72efb5de573589ffa54b484a8cf89bc44c9dbf64d43fda5d9 SHA512 f8c12fc3c8787be38bca6c6f84a8279c1380fbe4fabbfba754235fdb042d7050bfb7b5a21ea87ef59dbd5184d28e8cb7667966c38f5dcad78fe8d47111896a3c EBUILD cholmod-2.1.2.ebuild 1760 BLAKE2B 4843142c993deb0246fe7aa3b333b0ff3f4c8c64f1b3582ba6c7df5fe287514ca124cc0939c60820c52476c6759440a1db812b677dd8cc9f23cfd93e4695099f SHA512 9884339cb38f0095eb9e087659b98cd6cd62425e11621cd40849a8b7e40965169f3b3be4fb2217f50b491327b83f7554ab5c8fbd55427a2ee1a293ad55b5428f -EBUILD cholmod-3.0.13.ebuild 1672 BLAKE2B 09acac2ecf87fa376e53b52733e3b45f9a72884f318fa01a9bc516c9dc50d81416bc8ad004353a66ef4bf97db3ac2008dc758034a38a9aef36e543b89aecb233 SHA512 e87be48fd0ac76db3edbb812220ba6f8a2c88b52fd9091e6508d8cf584fc5cec0ab7e280ec2e0d4702fbebaaf0af197219c68f6966766c2ad8b3c7901cf8a417 +EBUILD cholmod-3.0.13.ebuild 1671 BLAKE2B ef23737bdc534124377cb44705fc0b5368ab3df316f48f1a76f3db14fd6a66a56536e8a051fb5f35e8caa444ed8277a43f2dac22f7cbd1f200be4af926771407 SHA512 a22969e486cafd4184fb8181132321d120455e62c6351b646d2177261039ac1d4c3520dd3b9353f266b1ec97198039d85b28c87e8915f724ca2cf25651ab6f9b +EBUILD cholmod-3.0.14.ebuild 1653 BLAKE2B 417721714a260b7265470a26f7231972780e04785f34c7f6c855ee83c26b6c687e04f1b4e474ea4ffc5db47b941448c50c0c0e487d90e4334bd0dda6a4a48c3e SHA512 4f5fee2fe576c5f77dcf30c3512a5439fab0ba96d586a7e7b2dd12388b22be00dbab50127068064a757d02597737846f44e5f6da429489381b0de6083f5fd569 MISC metadata.xml 920 BLAKE2B d78c2990bf35b95155adefe8a7b6d3213cd7187d031abbe91f1e12cb2ab438fce1ec34743a21a20b649255c691b87b6033f8bf8eec30b670456c105ad80f2c9a SHA512 64083142e54e0d9df8fb93c8a9ef810c4a6c85546ed8d96413acbadcbe3120d528e15895786e303094874448eeb4b411ce457147f452f781c6184aea985f5e9a diff --git a/sci-libs/cholmod/cholmod-3.0.13.ebuild b/sci-libs/cholmod/cholmod-3.0.13.ebuild index 4fdcecff8207..96d60a60ddcf 100644 --- a/sci-libs/cholmod/cholmod-3.0.13.ebuild +++ b/sci-libs/cholmod/cholmod-3.0.13.ebuild @@ -11,7 +11,7 @@ SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" LICENSE="LGPL-2.1+ modify? ( GPL-2+ ) matrixops? ( GPL-2+ )" SLOT="0" -KEYWORDS="amd64 ~arm arm64 ~hppa ~ia64 ~mips ppc ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~x86-macos" +KEYWORDS="amd64 arm arm64 ~hppa ~ia64 ~mips ppc ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~x86-macos" IUSE="cuda doc +lapack +matrixops +modify +partition" BDEPEND="virtual/pkgconfig diff --git a/sci-libs/cholmod/cholmod-3.0.14.ebuild b/sci-libs/cholmod/cholmod-3.0.14.ebuild new file mode 100644 index 000000000000..566f5c250c17 --- /dev/null +++ b/sci-libs/cholmod/cholmod-3.0.14.ebuild @@ -0,0 +1,71 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs + +DESCRIPTION="Sparse Cholesky factorization and update/downdate library" +HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html" +SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" + +LICENSE="LGPL-2.1+ modify? ( GPL-2+ ) matrixops? ( GPL-2+ )" +SLOT="0" +KEYWORDS="~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x86-macos" +IUSE="cuda doc +lapack +matrixops +modify +partition" + +BDEPEND="virtual/pkgconfig + doc? ( virtual/latex-base )" +DEPEND=" + sci-libs/amd + sci-libs/colamd + cuda? ( + dev-util/nvidia-cuda-toolkit + x11-drivers/nvidia-drivers + ) + lapack? ( virtual/lapack ) + partition? ( + sci-libs/camd + sci-libs/ccolamd + || ( + >=sci-libs/metis-5.1.0 + sci-libs/parmetis + ) + )" +RDEPEND="${DEPEND}" + +src_configure() { + local lapack_libs=no + local blas_libs=no + if use lapack; then + blas_libs=$($(tc-getPKG_CONFIG) --libs blas) + lapack_libs=$($(tc-getPKG_CONFIG) --libs lapack) + fi + + local cudaconfargs=( $(use_with cuda) ) + if use cuda ; then + cudaconfargs+=( + --with-cublas-libs="-L${EPREFIX}/opt/cuda/$(get_libdir) -lcublas" + --with-cublas-cflags="-I${EPREFIX}/opt/cuda/include" + ) + fi + + econf \ + --disable-static \ + --with-blas="${blas_libs}" \ + --with-lapack="${lapack_libs}" \ + $(use_with doc) \ + $(use_with modify) \ + $(use_with matrixops) \ + $(use_with partition) \ + $(use_with partition camd) \ + $(use_with lapack supernodal) \ + "${cudaconfargs[@]}" +} + +src_install() { + default + + # no static archives + find "${D}" -name '*.la' -delete || die +} diff --git a/sci-libs/cln/Manifest b/sci-libs/cln/Manifest index dd547827116c..11346f509892 100644 --- a/sci-libs/cln/Manifest +++ b/sci-libs/cln/Manifest @@ -2,7 +2,7 @@ AUX cln-1.3.2-arm.patch 340 BLAKE2B e66f245944e4a21f87c64d6c79f8b11fd55d8733fbc3 DIST cln-1.3.3.tar.bz2 1300229 BLAKE2B ca7985771d300b2bf0a1e5d6acda90de2596e0a8910c293500c8c218578814a82867ac24b641d3e3a36897a1a0ebf09a136ba6d64c7a1ed61133aa0b89ecacea SHA512 ee829cd03a2d36215a4d4e76cc0aa6c5abe6ff967ed366d752da1dc0c47dbec56e0521e92fb35574c038305fb767991c5c7fd12ad03583080da3f923fbfecdaf DIST cln-1.3.4.tar.bz2 1281348 BLAKE2B 7681ae5a421f2992e16b48541b46aceb988d697d95d2457fbe2f8c0f7e8ca95e6fbfb0fc309ea29a4669bc3d4fdf9c670fdf25b202019457ffba392f15bf2fa4 SHA512 2178a64b4388b3018c3847f6fb192ea51eb9c8618302986d7706accef17184e3333ddeca218d726f93f3b985598952ad58d705c9081201985611e383f788a631 DIST cln-1.3.6.tar.bz2 1330815 BLAKE2B 89ddd0079ac746b262dac01ae0fc1ceb250956c530883d93430e62866e09fdd964c4f96edb21260f9aa40f739450996e1bf21503a30cc02fffaba08a1bd45264 SHA512 a32a1449c5f0edac1444e58f500ef1a72ffab8dad65125082eff0995cc9855b45f38b89c7f754e3d4487756a8cd3f7db1e534865b8d0384fd28246f444ed7d14 -EBUILD cln-1.3.3.ebuild 1315 BLAKE2B 6df09568b8af0481148ec0c7a3d948780130a99602dcf243dbc9031462572cbf6338b45c0ed2080b4c97418471d748ed85be17de528800ef363caaa7f9f3b605 SHA512 c43939707b5c7401f45fe53a07bfd4c90bbac65cecc95b70cd13dbb4ca8d80c0f330a8605753ce51853205c08fad98c9aa59275710c673aca0f31d6949177453 -EBUILD cln-1.3.4.ebuild 1298 BLAKE2B f3600f208eaff7cee7acfe0d990372188d2fe7c47bce1abcd6220dfb5606093492b7d697fc8b8e71cd19f4777e6d03a7d29b47d0992fe6812676646b4135d970 SHA512 914d452df7ce8ae95d8be1ba3c33aff59197bebc0020c3e9bfbc916013d93de3688030c5e268799e57c6d8f4f37b13b47ab831134ce92a2ca2df08e82026e04f -EBUILD cln-1.3.6.ebuild 1146 BLAKE2B 262832d69f9a3918415e074da23197775617023bb146e3f64b5da54fa6e09d35b45b6089d8e0cf4057797c5633f4730fd4ee8d2ba0bc0b3f0b8543be41cd0c20 SHA512 b29b9bb985070367c53bf3eb7a3b965e130a61a64e3fe9d09aa2777116775e00c86060ab7eb457bee26eb000606a352d4bdfa58efe77c5dbb02f215e5fc27b97 +EBUILD cln-1.3.3.ebuild 1438 BLAKE2B 78b1e185c3219915710b03dc1af6f9fa70ac75e6a426d64e1a8a8ad6a5718b2680ebd379c476f9ee3a69901632fa47974ea227948c863131cb32e425098f0ef3 SHA512 fa45dcc25cc6a3027aef2ecf669ab815e2d148a1d29db9ac7164ac6f13cd9e1bac532d8e0c3c891b018b1198dcba0b3063c1777e985d07f847647c03563ec5dc +EBUILD cln-1.3.4.ebuild 1421 BLAKE2B b2319cd4418956e87d72613c06ad85f9b3572d7f7bb86fc6bd75bf411274c6764c210eaff35d32ed2e5512b30e9c26f07750d3db25ded991c794fa4b72d325de SHA512 1a5658a9a716619b86b5ffe32dd063432e52cc5c5fae41fc7b550557ef3575f4c34aeef445c947f9b416f6013c36a00e598d58732a26ad6dec3a4599594f78d3 +EBUILD cln-1.3.6.ebuild 1214 BLAKE2B eace23afb8dd18ead939037030d2d12ffa0e1e59a2078809ff1dbb194df02985e862aeef6d9ed6feeda7b590e24e3db128ec597d701f08f6381051c41cd8b082 SHA512 9e881c24f33e8f6d72fdaf684e52eac54e5ce7083d8baba9082b598c3c0b1db543c52ca5b270e9efcdadd078df2965e8367567c45f500799cf30575235d5fa42 MISC metadata.xml 702 BLAKE2B 597b40fd2f7f11ef4e6ec7d0c523d2eeedb9a2cf6d2a663616dc45e891368136b38cb7760c588a7fee0880d6bcab6acace1771ad4d108ea6d52eff0abbb7e08f SHA512 4b6ddc8f558bc777963dcf271584ba59ba3d8cc3c2c95260a5680eab2a436dca894a2318f5bacdd9c9da68e6c22323d4ef2829b9bb1de0db2467f20ac204d95b diff --git a/sci-libs/cln/cln-1.3.3.ebuild b/sci-libs/cln/cln-1.3.3.ebuild index 8b641d2d4f4d..9687c7bb01a1 100644 --- a/sci-libs/cln/cln-1.3.3.ebuild +++ b/sci-libs/cln/cln-1.3.3.ebuild @@ -12,7 +12,7 @@ SRC_URI="ftp://ftpthep.physik.uni-mainz.de/pub/gnu/${P}.tar.bz2" LICENSE="GPL-2" SLOT="1" KEYWORDS="~alpha amd64 arm arm64 hppa ~ia64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux" -IUSE="doc examples static-libs" +IUSE="doc examples" RDEPEND="dev-libs/gmp:0=" DEPEND="${RDEPEND} @@ -35,6 +35,11 @@ src_prepare() { autotools-utils_src_prepare } +src_configure() { + local myeconfargs=( --disable-static ) + autotools-utils_src_configure +} + src_compile() { autotools-utils_src_compile if use doc; then @@ -53,4 +58,6 @@ src_install() { insinto /usr/share/doc/${PF}/examples doins examples/*.cc fi + + find "${ED}" -name '*.la' -delete || die } diff --git a/sci-libs/cln/cln-1.3.4.ebuild b/sci-libs/cln/cln-1.3.4.ebuild index e8173925c67e..29ac33c74b05 100644 --- a/sci-libs/cln/cln-1.3.4.ebuild +++ b/sci-libs/cln/cln-1.3.4.ebuild @@ -12,7 +12,7 @@ SRC_URI="https://www.ginac.de/CLN/${P}.tar.bz2" LICENSE="GPL-2" SLOT="1" KEYWORDS="~alpha amd64 arm arm64 hppa ~ia64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux" -IUSE="doc examples static-libs" +IUSE="doc examples" RDEPEND="dev-libs/gmp:0=" DEPEND="${RDEPEND} @@ -35,6 +35,11 @@ src_prepare() { autotools-utils_src_prepare } +src_configure() { + local myeconfargs=( --disable-static ) + autotools-utils_src_configure +} + src_compile() { autotools-utils_src_compile if use doc; then @@ -53,4 +58,6 @@ src_install() { insinto /usr/share/doc/${PF}/examples doins examples/*.cc fi + + find "${ED}" -name '*.la' -delete || die } diff --git a/sci-libs/cln/cln-1.3.6.ebuild b/sci-libs/cln/cln-1.3.6.ebuild index 66502b2bb272..1fa4e64dd112 100644 --- a/sci-libs/cln/cln-1.3.6.ebuild +++ b/sci-libs/cln/cln-1.3.6.ebuild @@ -11,8 +11,8 @@ SRC_URI="https://www.ginac.de/CLN/${P}.tar.bz2" LICENSE="GPL-2" SLOT="1" -KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux" -IUSE="doc examples static-libs" +KEYWORDS="~alpha amd64 arm arm64 hppa ~ia64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux" +IUSE="doc examples" RDEPEND="dev-libs/gmp:0=" DEPEND="${RDEPEND} @@ -33,6 +33,10 @@ src_prepare() { Makefile.in || die } +src_configure() { + econf --disable-static +} + src_compile() { default if use doc; then @@ -51,4 +55,6 @@ src_install() { docinto examples dodoc examples/*.cc fi + + find "${ED}" -name '*.la' -delete || die } diff --git a/sci-libs/colamd/Manifest b/sci-libs/colamd/Manifest index a6ff83ec3c9d..087ab7800a2b 100644 --- a/sci-libs/colamd/Manifest +++ b/sci-libs/colamd/Manifest @@ -1,3 +1,3 @@ DIST colamd-2.9.6.tar.bz2 298903 BLAKE2B e1e3cfa0153e21b742854d28fb6d3ede287c2ec22cfef4268a8aba8bb239be527433907f6984dad976341cf6e1ca9cb39f5c97029ad9bed032a874add9aa0e02 SHA512 f302d18f9ba004c9d1b0e1ada76e70f20fa1d11896815e5300983513b7ed4a7b969adef33adb1a57d67ce856a5ded410874c23d9bba42b6bf1a6a790430f5137 -EBUILD colamd-2.9.6.ebuild 652 BLAKE2B 9f0379eed783a2c0187a67173af2d0767424a76fe09adc9942787b278fae68b2fdbeb6d8113b343ba60815e86226a51eb916f37136e2254ae48df016347f3091 SHA512 ec5836bcb1d59494f119e58b7a78e68ee23b6276fc6fdc52a2ab3a774ad8d6a426df2762912ef1e65975ac420d062e24b114a6332db21c9d41120c49a5023f88 +EBUILD colamd-2.9.6.ebuild 652 BLAKE2B bbd14c7d634d08e55533f830fc456b50c3cc4400f2c551312ff5258e074d244ae558e2b04a2df138e0e68346c65aee55b879c168d3adab2852bd12860c02c505 SHA512 25440b8a12ae5cd6187b2842b753337b11360b119ece67b7e3af7692d32f12be7e5cebc121eefb0474e3989a57ce401a0f56c239289fe606827c9e6d483d2043 MISC metadata.xml 827 BLAKE2B d1b92027b2b820c67cb091e71c22c5ebcfe8e560968b8cf76f5cb61b6c26a71b66f4801343a531fbc8941b5b678bff44e2ab3aa6bec49db9b0264ea2273ac816 SHA512 367258fb10bcde8e5136c541ef1e134c4e882b296c45300c8d70945222c0730572b1dc116b80057c3a9d6a64c175fb86915847522000740d9a39e6fcd8eb5004 diff --git a/sci-libs/colamd/colamd-2.9.6.ebuild b/sci-libs/colamd/colamd-2.9.6.ebuild index a656a74f5732..15cc9b507d95 100644 --- a/sci-libs/colamd/colamd-2.9.6.ebuild +++ b/sci-libs/colamd/colamd-2.9.6.ebuild @@ -4,12 +4,12 @@ EAPI=7 DESCRIPTION="Column approximate minimum degree ordering algorithm" -HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html" +HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html" SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" LICENSE="BSD" SLOT="0" -KEYWORDS="~alpha amd64 ~arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" +KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" BDEPEND="virtual/pkgconfig" DEPEND=">=sci-libs/suitesparseconfig-5.4.0" diff --git a/sci-libs/colpack/Manifest b/sci-libs/colpack/Manifest index 3c9a9baf2b78..576565d81d2f 100644 --- a/sci-libs/colpack/Manifest +++ b/sci-libs/colpack/Manifest @@ -1,3 +1,3 @@ DIST colpack-1.0.10.tar.gz 658087 BLAKE2B af6409969f0dfee465ad88515d0d4f82525047a8268ac9fd4b0784de1f4fd30ce7ba968502a5d92ad3a86f554fb8f1a786defb09396c8e678f62aeaa3cc25397 SHA512 566b7906c5d0dbcd6dcb9c359510ee8b13bf3249e56d8f88f7806493d1df14f54638a0558d601ab4dbc28f36093795eede57a059a7c4e66438b47bf5a0119808 -EBUILD colpack-1.0.10.ebuild 1104 BLAKE2B 3b428297f6a4dda375319a7633d1bcd20bc5b381f99e46ef415911b3ec2626f15ab1e6a5e6633d36409b39769363536fa9acb307e5bbf187d2fa4e724f3fb843 SHA512 c4fe5fc3863f384bead7e1b11f0fae0012520388e5891f5f8e9670eca21aea05dfb981750efbac2ba00a1fd1b694d87728159429aba577e377c3a4e28bf647dc +EBUILD colpack-1.0.10.ebuild 1103 BLAKE2B ef32cbd7d52cfc688748f5d14a5a296a4e5766f6d585abb1a1970e6c76ab15bbcf2e9a30203604cf69a2045aab9e61d81eaf31a2785a4edd7f9797933f465c18 SHA512 c9c3da1c54e29a6c6b1d1953a2372ac5eeb4e2fb1129fc8ba0521178918abf468b3788dfad56529fe9afb5491f3bf9ae7aee98904e3a5f45bce51b75ee8ce1c6 MISC metadata.xml 605 BLAKE2B c7dd1378bd62eeaf69648625deda27806662c0f2fa83112fcc757925412c3d1d2ce218d64be2ad98dc54088618ff874d6a4e7f266e5fc006e98e257d757f4190 SHA512 28e191bbb72a212832b13ad84064538a884835b1f3e4f8e50d4b247b17189a12fa1de32138a675ab1e9fed58b40101c50d2e4472c554cf25f6f919f24059c17b diff --git a/sci-libs/colpack/colpack-1.0.10.ebuild b/sci-libs/colpack/colpack-1.0.10.ebuild index f7a56facc524..9ba8c09a081b 100644 --- a/sci-libs/colpack/colpack-1.0.10.ebuild +++ b/sci-libs/colpack/colpack-1.0.10.ebuild @@ -14,7 +14,7 @@ SRC_URI="https://github.com/CSCsw/${MYPN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" SLOT="0" IUSE="openmp static-libs" -KEYWORDS="~alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux" +KEYWORDS="~alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux" RDEPEND="" DEPEND="${RDEPEND}" diff --git a/sci-libs/cxsparse/Manifest b/sci-libs/cxsparse/Manifest index 681446030969..1c093b5785d5 100644 --- a/sci-libs/cxsparse/Manifest +++ b/sci-libs/cxsparse/Manifest @@ -1,4 +1,4 @@ AUX cxsparse-3.2.0-header.patch 531 BLAKE2B 7b8738c26a48aa01541db4978cc195f093da3e5d81536ff5819334ac847cd5d5a0e7ea5d2b1891183015ff449d98ba96ad360c4097369a70adab72a5419c471f SHA512 2340a350af044bcded3a592fde76ee885c02a3047772a02d91bfa0b43e7b6a04d7102893ba8d3e2394435fa6194d767812a3896359581c4d789890d2d35a78e0 DIST cxsparse-3.2.0.tar.bz2 2080196 BLAKE2B 9b89469c45e518077c4348ad3efd8d89d248e4c039057c0286ee44b493ab595075894d01530cbfbe845b91ef5e43cfbfdd102721cfeefe943a1cb4bc5f171843 SHA512 9931dac5b319b61a39ccb5f34309acb4240602b5f55d029c790ed0b7319a373cb925c4b83994526af4bc5b19b88c723f04581068d1fc80960a290c9d6d1e1aef -EBUILD cxsparse-3.2.0.ebuild 805 BLAKE2B 0b737ac020c2d7ec730f9bf129c41857bd876537223526b961efba8da5433b26323f67d091ba725f9a8fd63aeb6a03e89f9bcab0aee9eabb9172bcab32f59f21 SHA512 101487e1540bb0f8bb5dd53a7b1a640145a382061ba7ff33288fb0bd69c78800ad9908ddfcc9c13c6a6dc342b80b4aaa6633897e6e90407a2618073269fa6199 +EBUILD cxsparse-3.2.0.ebuild 805 BLAKE2B 5652aca447544327aa3735b3ff0a2d0b4b43ac9d82e018b1572564894be753ed8c34b988d99307c549460483108f7bf8ecfc0f4eeff613064c17d8eadc74a51a SHA512 1d2fb294422317d79df278c058cb72875dbf25df80d5eebf8c1f8c0c5bcf9f67a9622b27b94aa18fecfddfe9dfad44d6ac7d0651aa8c320317fb1790d914648e MISC metadata.xml 449 BLAKE2B 18e0d692b302702a20ecfe5ae10b8d48de7582649feeda3fe9c0bbcbbf6e6876f620bd490dabf788276a378d60b3bd0c1ee19a6fa439f37dff9269e8fd74d12d SHA512 908237dbe24a16831fc04faaff76d06bc4f0ae8605a551a98763d72ecbd19dcdbf2c74f320ccaf296c69bcacb3cda51b600ca0a9a8b481858723c2dd34a3754c diff --git a/sci-libs/cxsparse/cxsparse-3.2.0.ebuild b/sci-libs/cxsparse/cxsparse-3.2.0.ebuild index 1f31b3ad40cf..1b981adafbed 100644 --- a/sci-libs/cxsparse/cxsparse-3.2.0.ebuild +++ b/sci-libs/cxsparse/cxsparse-3.2.0.ebuild @@ -6,12 +6,12 @@ EAPI=7 inherit multilib-minimal DESCRIPTION="Extended sparse matrix package" -HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html" +HOMEPAGE="https://people.engr.tamu.edu/davis/suitesparse.html" SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" LICENSE="LGPL-2.1+" SLOT="0" -KEYWORDS="amd64 ~arm arm64 ~hppa ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" +KEYWORDS="amd64 arm arm64 ~hppa ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" IUSE="static-libs" BDEPEND="virtual/pkgconfig" diff --git a/sci-libs/dcmtk/Manifest b/sci-libs/dcmtk/Manifest index dc2a85eea3d0..8614bef97096 100644 --- a/sci-libs/dcmtk/Manifest +++ b/sci-libs/dcmtk/Manifest @@ -6,5 +6,5 @@ DIST dcmtk-3.6.4.tar.gz 6402734 BLAKE2B 2d362789e7819089b7da46a9601fa5d53b8e8aab DIST dcmtk-3.6.5.tar.gz 6483626 BLAKE2B 6182ef207b42b16ee91e94397cc8a5b2d108435a30d4c86f0b7e39af91186604f16be07a75e176bf50575446abcab21b2f63158dc4e5f2cb6de3996a0881b295 SHA512 c0cf61b0095c5708709406bfef5e8bb82dd01dbf77df7f2af2118004920bda68218eb1e4174bf92941cdae0acdb275c886570dafd29476eee2eb815e9a82830a EBUILD dcmtk-3.6.3.ebuild 2039 BLAKE2B 655b3b3d424ebdba0d96f629b2308d1bd5650c03ebf48e575f05a8a9c3295928aff91cf34086b1a2f19a41907ff4811394f6c4622f3fd0ba3b2501dbe5a44d2c SHA512 7b92fda743f4ad39112f440b63db6549547a0e12510b9feb2c2a04cbea1a96db49d3c4ee04a8bf4e61bf500c0a94325332a997cc1f5f2434040b1b6a59b24211 EBUILD dcmtk-3.6.4-r1.ebuild 1931 BLAKE2B 03b414dc9a763d562598760d9adae6f0ddea24431e13dbc517197ce84e4cf4261edd702b68398040674a7e11bc48b3b21b2564993d579902e40e914c75da1149 SHA512 6cb6d226886c6b7d29366986f6ce319d45f4f96d61b8c794cddcc1867bc8aa3518474c23b8c56e51e6d81bad03fbe309fa06364213a1327063aca852e76897c4 -EBUILD dcmtk-3.6.5.ebuild 1898 BLAKE2B 5f818d6d211393229a6bae8baec6cf79c7df232d01b020b00d7effc7988c4cfb77a4f9ebd79a4bd7523722f5929c6a7d759b6d535fdbbc3b5aed56c54c12e267 SHA512 52adf936393945f3e57cda5ada6386025d25e2167bfdd258d9411ee2b14200007bdcbd1d813d7ddd65484bfa758c92413dd0c594eba1ea25698d9663048cae62 +EBUILD dcmtk-3.6.5.ebuild 1903 BLAKE2B 73d5c5e620760899ed921f07eeee5ba9f29c05bff87251d0e1138bec0a147cfc3ee3762431917694d47618634ae282230c5696afbbfa6cc1debe06d7e77d00e0 SHA512 852555834f82ea2468f7433d8caec00df784e347d7d1251e6165bf760f05e59b56aa1aa4dcfdb1bb37e875c42da9522a2e4f01ebb162d72e23b680eb61eb816f MISC metadata.xml 227 BLAKE2B ed3fc2ad8c0bb2658fb120d3a54c69b5f03eb006f601b6aa8b45a48d73ab523ece0fa1efcee0ebd8fa6f134f77ff33f957dad0954d5c0fcef98e56179e24c041 SHA512 381afcd62a7b7d54c6108ee892d3609de2c183713947c7f04fad1e6c69a49866ee30265e313c72d446e4f8cab9296160f7f3d1797f9a37430fc8c4e02f50a166 diff --git a/sci-libs/dcmtk/dcmtk-3.6.5.ebuild b/sci-libs/dcmtk/dcmtk-3.6.5.ebuild index 240ca02f96fb..58d21bcacae1 100644 --- a/sci-libs/dcmtk/dcmtk-3.6.5.ebuild +++ b/sci-libs/dcmtk/dcmtk-3.6.5.ebuild @@ -10,7 +10,7 @@ HOMEPAGE="https://dicom.offis.de/dcmtk.php.en" SRC_URI="https://dicom.offis.de/download/dcmtk/release/${P}.tar.gz" LICENSE="OFFIS" -KEYWORDS="~amd64 ~arm ~x86" +KEYWORDS="amd64 ~arm ~ppc64 x86" SLOT="0" IUSE="doc png ssl tcpd tiff +threads xml zlib" diff --git a/sci-libs/fftw/Manifest b/sci-libs/fftw/Manifest index fc4beaa82d46..0a0a69ed1800 100644 --- a/sci-libs/fftw/Manifest +++ b/sci-libs/fftw/Manifest @@ -5,11 +5,8 @@ AUX fftw-2.1.5-no-test.patch 1028 BLAKE2B 878780d275d1454edff28c6834c118981e8ecb AUX fftw-2.1.5-parallel-tests.patch 3720 BLAKE2B 6b18c68e121035c517cf8eae245d32a1b99f51fc01f3baa0b96351f0a0833714c89798fc06b231c3acda6131cb6e0fe9782a0d1c34c76eac04eee8d0b9144857 SHA512 2e02c69dcbae6c11b8bdf0edb1a49c9754c9a599438e1073eb2bcff04c52c38c1e76eb352f21957a0518d61ee2e32d302e5624e234d28344fc99036313394d3e AUX fftw-2.1.5-texinfo5.1.patch 596 BLAKE2B f45dcfef53cfb374c2022e88632934b48f2a19e5e75734a5c7d7901b8464403ceb675efcf6e43b00f10779776a8e9789956bb77e937b754c0a070e15821f4877 SHA512 71dd3c13784f9bd1b518827a6784e2619145377cbc88764c69830519096f61863140b90c8138d6a65e3994487cb12cd06baba826d48735c2cbddc1d2320a4214 DIST fftw-2.1.5.tar.gz 1256888 BLAKE2B 61e2eed91459479ab893a423c1a6f38dd7e9637e0466fa0a59fccfa2cec930e8870a5febfccfacfe44e876e40534c34e05dc62b8e7bf188b43fe3a65c6a7bdba SHA512 8724a7f66aa19b271aa0ffb0e3762919f08082ac4400f52d11b50aef9b9d23a7d4fc5d6b2eae0ac166e2bb30a4d38a52c878e8bf8e24aba01ab1c3ddf5ebec15 -DIST fftw-3.3.6-pl2.tar.gz 4185261 BLAKE2B e2f877c13ab441ddf1ae731cf3ebdc5d1565f8216f497694ea1fccc43b6a53fc02d39e17f97c56d15d03410b2005e6c693cb4b639399aac0f6ebdc63fed32d2e SHA512 e130309856752a1555b6d151c4d0ce9eb4b2c208fff7e3e89282ca8ef6104718f865cbb5e9c4af4367b3615b69b0d50fd001a26d74fd5324ff2faabe14fe3472 DIST fftw-3.3.8.tar.gz 4110137 BLAKE2B 555ac1401a5a41b7661afd0288c2353398f2c9b73695742459079ebf050dfa4c371484ea65324fd4b7d374f70d88a5942ff8abaad167b0d44d485bf1dc9e208c SHA512 ab918b742a7c7dcb56390a0a0014f517a6dff9a2e4b4591060deeb2c652bf3c6868aa74559a422a276b853289b4b701bdcbd3d4d8c08943acf29167a7be81a38 EBUILD fftw-2.1.5-r9.ebuild 3146 BLAKE2B 8f899d8142cd8a90a887240756c501e2d736385d636734a9ddbcebb0b0d479e8006d5cbc75d20f41aa4deacfad469870ec5d387082da20f7a75333d667c190f1 SHA512 7648d4c60ad453a2b8be1a687918278941b54a99c06b59af5121dcdf259eb40f423969ab6d5b861668c4216fdfd9167043c72c51d3fbfb8e0da0cb50da6ce945 -EBUILD fftw-3.3.6_p2.ebuild 4459 BLAKE2B 0585c2fe679f1c849e60be3cf7ad87b5af8aac4d0e342fd064cd6d82c8c29f36fafc430222eb38de5f6bfaaa65547163d132635a818201b8f78d689aed33f957 SHA512 0f19ac77caf1a9e5e449b21498b582a7e6061ddc15754d4e626c89589477109cab56167aba8d9dd13c4729d390e713d5edf28095824a4a1b25520a6c8c1c37ab EBUILD fftw-3.3.8-r1.ebuild 4636 BLAKE2B 3e97d8a13f6fab8915a0afd265b58ab56f53f3489f42dd0385f7bd3ef049826131ec7e976398f621be5b73fb4536a3e0ebc480bbe5194fa9f65bb8c22f5d7078 SHA512 0a1ef1c403e30e45193908f09e7f03379b4ccbebbfa1f6cf0918a0b3e147c41461c3c0434f08b591542610b9aca9d9410a94d27c38a975d5bc4129f83a7f429d -EBUILD fftw-3.3.8.ebuild 4523 BLAKE2B e449bb3e635e45930f18e36ca1cc2989b8d6f7bb6e53f6c937406a461e16badb64833e625327e1ef0c6a39ca8c9ba6360b2712a72e23de298bd774016e6c57ea SHA512 6ac197a894ceb0f29d4e3e22ac45cc48007d62230ee9448260c54a04d77595a7c702fd7884d7f9dd4a8b737adfe99534f268f004eae91de90dbe21e7daeec220 EBUILD fftw-9999.ebuild 4518 BLAKE2B 41047e346e12e633d2faa45341cff1eb02959295f3000d0c5dc2b74ae366a72ef9c9b5724193c3c4b9ee2e7de4a2c76f2f19451156cae8d7ca6c201c9aab60dc SHA512 122471201bc246cc815abaf074a310ec9e91a9e3bbd9b58ceb3572114318e18f6e3def64d4e027d0022163565d35ba792daa1cc7e4b85150dd4cd7c62ec59422 MISC metadata.xml 1088 BLAKE2B 308c6b8e2b7388d41c5ee6c3336b7b61037277b4563cb212cccaf25c894d350434eaa0f282172f943cf26496345b4c7e58afa55f50b9cf07fc04aea7a5d25244 SHA512 df52860deccf7e7139affaad8cfb837b7f3770a22c621f668db24d916cee5b27acc1486884797e8d0881d8887874627b919816f8245101982e963a8db43f3c98 diff --git a/sci-libs/fftw/fftw-3.3.6_p2.ebuild b/sci-libs/fftw/fftw-3.3.6_p2.ebuild deleted file mode 100644 index 3d8aa2902359..000000000000 --- a/sci-libs/fftw/fftw-3.3.6_p2.ebuild +++ /dev/null @@ -1,181 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit flag-o-matic fortran-2 toolchain-funcs versionator multibuild multilib-minimal - -DESCRIPTION="Fast C library for the Discrete Fourier Transform" -HOMEPAGE="http://www.fftw.org/" - -MY_P=${PN}-${PV/_p/-pl} - -if [[ ${PV} = *9999 ]]; then - inherit autotools git-r3 - EGIT_REPO_URI="https://github.com/FFTW/fftw3.git" -else - SRC_URI="http://www.fftw.org/${PN}-${PV/_p/-pl}.tar.gz" - KEYWORDS="~alpha amd64 arm ~arm64 hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos" -fi - -LICENSE="GPL-2+" -SLOT="3.0/3" -IUSE="altivec cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_fma3 cpu_flags_x86_fma4 cpu_flags_x86_sse cpu_flags_x86_sse2 doc fortran mpi neon openmp quad static-libs test threads zbus" -RESTRICT="!test? ( test )" - -RDEPEND=" - mpi? ( >=virtual/mpi-2.0-r4[${MULTILIB_USEDEP}] )" -DEPEND="${RDEPEND} - test? ( dev-lang/perl )" - -S=${WORKDIR}/${MY_P} -HTML_DOCS=( doc/html/. ) - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp; then - tc-check-openmp - FORTRAN_NEED_OPENMP=1 - fi - - fortran-2_pkg_setup - - MULTIBUILD_VARIANTS=( single double longdouble ) - if use quad; then - if ! tc-is-gcc; then - ewarn "quad precision only available for gcc >= 4.6" - die "need quad precision capable gcc" - fi - MULTIBUILD_VARIANTS+=( quad ) - fi -} - -src_prepare() { - default - - # fix info file for category directory - if [[ ${PV} = *9999 ]]; then - sed -i -e - 's/Texinfo documentation system/Libraries/' \ - doc/fftw3."info" || die "failed to fix info file" - - eautoreconf - fi -} - -multilib_src_configure() { - # jlec reported USE=quad on abi_x86_32 has too few registers - # stub Makefiles - if [[ ${MULTILIB_ABI_FLAG} == abi_x86_32 && ${MULTIBUILD_ID} == quad-* ]]; then - mkdir -p "${BUILD_DIR}/tests" || die - echo "all: ;" > "${BUILD_DIR}/Makefile" || die - echo "install: ;" >> "${BUILD_DIR}/Makefile" || die - echo "smallcheck: ;" > "${BUILD_DIR}/tests/Makefile" || die - return 0 - fi - - local myconf=( - --enable-shared - $(use_enable static-libs static) - $(use_enable "cpu_flags_x86_fma$(usex cpu_flags_x86_fma3 3 4)" fma) - $(use_enable fortran) - $(use_enable zbus mips-zbus-timer) - $(use_enable threads) - $(use_enable openmp) - ) - case "${MULTIBUILD_ID}" in - single-*) - # altivec, sse, single-paired only work for single - myconf+=( - --enable-single - $(use_enable altivec) - $(use_enable cpu_flags_x86_avx avx) - $(use_enable cpu_flags_x86_avx2 avx2) - $(use_enable cpu_flags_x86_sse sse) - $(use_enable cpu_flags_x86_sse2 sse2) - $(use_enable neon) - $(use_enable mpi) - ) - ;; - - double-*) - myconf+=( - $(use_enable cpu_flags_x86_avx avx) - $(use_enable cpu_flags_x86_avx2 avx2) - $(use_enable cpu_flags_x86_sse2 sse2) - $(use_enable mpi) - ) - ;; - - longdouble-*) - myconf+=( - --enable-long-double - $(use_enable mpi) - ) - ;; - - quad-*) - # quad does not support mpi - myconf+=( - --enable-quad-precision - ) - ;; - - *) - die "${MULTIBUILD_ID%-*} precision not implemented in this ebuild" - ;; - esac - - ECONF_SOURCE="${S}" econf "${myconf[@]}" MPICC="$(tc-getCC) -lmpi" -} - -src_configure() { - multibuild_foreach_variant multilib-minimal_src_configure -} - -src_compile() { - multibuild_foreach_variant multilib-minimal_src_compile -} - -multilib_src_test() { - emake -C tests smallcheck -} - -src_test() { - # We want this to be a reasonably quick test, but that is still hard... - ewarn "This test series will take 30 minutes on a modern 2.5Ghz machine" - # Do not increase the number of threads, it will not help your performance - # local testbase="perl check.pl --nthreads=1 --estimate" - # ${testbase} -${p}d || die "Failure: $n" - - multibuild_foreach_variant multilib-minimal_src_test -} - -src_install() { - multibuild_foreach_variant multilib-minimal_src_install - dodoc CONVENTIONS - - if use doc; then - dodoc doc/*.pdf - docinto faq - dodoc -r doc/FAQ/fftw-faq.html/. - else - rm -r "${ED%/}"/usr/share/doc/${PF}/html || die - fi - - local x - for x in "${ED%/}"/usr/lib*/pkgconfig/*.pc; do - local u - for u in $(usev mpi) $(usev threads) $(usex openmp omp ""); do - sed -e "s|-lfftw3[flq]\?|&_${u} &|" "$x" > "${x%.pc}_${u}.pc" || die - done - done - - # fftw uses pkg-config to record its private dependencies - find "${D}" -name '*.la' -delete || die -} diff --git a/sci-libs/fftw/fftw-3.3.8.ebuild b/sci-libs/fftw/fftw-3.3.8.ebuild deleted file mode 100644 index e54af4af14bf..000000000000 --- a/sci-libs/fftw/fftw-3.3.8.ebuild +++ /dev/null @@ -1,182 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -FORTRAN_NEEDED=fortran - -inherit flag-o-matic fortran-2 multibuild multilib-minimal toolchain-funcs - -DESCRIPTION="Fast C library for the Discrete Fourier Transform" -HOMEPAGE="http://www.fftw.org/" - -MY_P=${PN}-${PV/_p/-pl} - -if [[ ${PV} = *9999 ]]; then - inherit autotools git-r3 - EGIT_REPO_URI="https://github.com/FFTW/fftw3.git" -else - SRC_URI="http://www.fftw.org/${PN}-${PV/_p/-pl}.tar.gz" - KEYWORDS="~alpha ~amd64 ~arm arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos" -fi - -LICENSE="GPL-2+" -SLOT="3.0/3" -IUSE="cpu_flags_ppc_altivec cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_fma3 cpu_flags_x86_fma4 cpu_flags_x86_sse cpu_flags_x86_sse2 doc fortran mpi neon openmp quad static-libs test threads zbus" -RESTRICT="!test? ( test )" - -RDEPEND=" - mpi? ( >=virtual/mpi-2.0-r4[${MULTILIB_USEDEP}] )" -DEPEND="${RDEPEND} - quad? ( sys-devel/gcc[fortran] ) - test? ( dev-lang/perl )" - -S=${WORKDIR}/${MY_P} -HTML_DOCS=( doc/html/. ) - -pkg_pretend() { - [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp -} - -pkg_setup() { - if [[ ${MERGE_TYPE} != binary ]] && use openmp; then - tc-check-openmp - FORTRAN_NEED_OPENMP=1 - fi - - fortran-2_pkg_setup - - MULTIBUILD_VARIANTS=( single double longdouble ) - if use quad; then - if ! tc-is-gcc; then - ewarn "quad precision only available for gcc >= 4.6" - die "need quad precision capable gcc" - fi - MULTIBUILD_VARIANTS+=( quad ) - fi -} - -src_prepare() { - default - - # fix info file for category directory - if [[ ${PV} = *9999 ]]; then - sed -i -e - 's/Texinfo documentation system/Libraries/' \ - doc/fftw3."info" || die "failed to fix info file" - - eautoreconf - fi -} - -multilib_src_configure() { - # jlec reported USE=quad on abi_x86_32 has too few registers - # stub Makefiles - if [[ ${MULTILIB_ABI_FLAG} == abi_x86_32 && ${MULTIBUILD_ID} == quad-* ]]; then - mkdir -p "${BUILD_DIR}/tests" || die - echo "all: ;" > "${BUILD_DIR}/Makefile" || die - echo "install: ;" >> "${BUILD_DIR}/Makefile" || die - echo "smallcheck: ;" > "${BUILD_DIR}/tests/Makefile" || die - return 0 - fi - - local myconf=( - --enable-shared - $(use_enable static-libs static) - $(use_enable "cpu_flags_x86_fma$(usex cpu_flags_x86_fma3 3 4)" fma) - $(use_enable fortran) - $(use_enable zbus mips-zbus-timer) - $(use_enable threads) - $(use_enable openmp) - ) - case "${MULTIBUILD_ID}" in - single-*) - # altivec, sse, single-paired only work for single - myconf+=( - --enable-single - $(use_enable cpu_flags_ppc_altivec altivec) - $(use_enable cpu_flags_x86_avx avx) - $(use_enable cpu_flags_x86_avx2 avx2) - $(use_enable cpu_flags_x86_sse sse) - $(use_enable cpu_flags_x86_sse2 sse2) - $(use_enable neon) - $(use_enable mpi) - ) - ;; - - double-*) - myconf+=( - $(use_enable cpu_flags_x86_avx avx) - $(use_enable cpu_flags_x86_avx2 avx2) - $(use_enable cpu_flags_x86_sse2 sse2) - $(use_enable mpi) - ) - ;; - - longdouble-*) - myconf+=( - --enable-long-double - $(use_enable mpi) - ) - ;; - - quad-*) - # quad does not support mpi - myconf+=( - --enable-quad-precision - ) - ;; - - *) - die "${MULTIBUILD_ID%-*} precision not implemented in this ebuild" - ;; - esac - - ECONF_SOURCE="${S}" econf "${myconf[@]}" MPICC="$(tc-getCC) -lmpi" -} - -src_configure() { - multibuild_foreach_variant multilib-minimal_src_configure -} - -src_compile() { - multibuild_foreach_variant multilib-minimal_src_compile -} - -multilib_src_test() { - emake -C tests smallcheck -} - -src_test() { - # We want this to be a reasonably quick test, but that is still hard... - ewarn "This test series will take 30 minutes on a modern 2.5Ghz machine" - # Do not increase the number of threads, it will not help your performance - # local testbase="perl check.pl --nthreads=1 --estimate" - # ${testbase} -${p}d || die "Failure: $n" - - multibuild_foreach_variant multilib-minimal_src_test -} - -src_install() { - multibuild_foreach_variant multilib-minimal_src_install - dodoc CONVENTIONS - - if use doc; then - dodoc doc/*.pdf - docinto faq - dodoc -r doc/FAQ/fftw-faq.html/. - else - rm -r "${ED%/}"/usr/share/doc/${PF}/html || die - fi - - local x - for x in "${ED%/}"/usr/lib*/pkgconfig/*.pc; do - local u - for u in $(usev mpi) $(usev threads) $(usex openmp omp ""); do - sed -e "s|-lfftw3[flq]\?|&_${u} &|" "$x" > "${x%.pc}_${u}.pc" || die - done - done - - # fftw uses pkg-config to record its private dependencies - find "${D}" -name '*.la' -delete || die -} diff --git a/sci-libs/gerris/Manifest b/sci-libs/gerris/Manifest index f4c1bdeb583f..dc3800c4595a 100644 --- a/sci-libs/gerris/Manifest +++ b/sci-libs/gerris/Manifest @@ -4,5 +4,5 @@ AUX gerris-20130531-use-blas-lapack-system.patch 1466 BLAKE2B a3c451570d97227008 AUX gerris-20131206-DEFAULT_SOURCE-replacement.patch 728 BLAKE2B c2c6e05692d200d308dd7cd51896a06270b32e768b2e84b535858390972344998b1f64ff1c4a752211b97473064999b0737a9d4de03a1ba0ef5536af62ea511d SHA512 b1ca792b4b9ffe88964f58e12a3caff23ec3ba31f8f43136acf9adc106c57d10f75f32d2ec7a6769cdd130324e9de9a1621fc4c90be834eef330690f765159c7 AUX gerris-20131206-lis-api-change.patch 526 BLAKE2B fedac0aa8cf763b37dd68c03f321e8ebe91caf944c51366ab3c8a1f0474eb140095af4207c208c8c9ed99bfb42a025e4437ad42da5e64cdf4986944910c3f1b6 SHA512 bba5cc317e66cbd48e80e2a1ce6cbd1f3688f77e3433c846294c56ba39591a840c2577eaffeed05553f651dc749ceaf751c2451624b71812ea2238014f456b25 DIST gerris-snapshot-131206.tar.gz 2841686 BLAKE2B 63618b2166e632e447f7a47dd17f2bab1820234b9a651c4fcad57250b13bbfdf98645c9525d4cebcae6ab9ef81d111fadbff9800e3144d84bf59f2248e271585 SHA512 b3855d51eea04c496d2e5f662c148560d9ab8d5dfa97e4f7d1c22c70405b9b801b46f30aa0d159b1bd6a8182f171a1649b5f510f0e13feeb55f29cafe57b45dd -EBUILD gerris-20131206-r1.ebuild 1557 BLAKE2B 0797d29c342267983c64f476e9a7572e9d847b1367d1f267511860d6d539ec237828f1a5b346af7242a1c1bbadca746ffb2dd986750c7dc25a26ec0a64926d89 SHA512 9a5a6d041fb41618c13d53fef7b8ad9af3c1753b52d6fd6e0466e9c20c1533dec2d9563d680966adfb01068c533cfebdf1fd18f3befe5361fd1280634b666e09 +EBUILD gerris-20131206-r1.ebuild 1558 BLAKE2B 6eb4b017e887b067f14396f250d14d564da9dd93d3164837f5d7899ebacdd5116c231d22680d9485e9b4b21de7ce42738b258410b5778229b987be70e0763669 SHA512 d05592d019f0cc00bcc7eafca126be972990fa48d33cf19e5becd61948604bbd1bd1fcf05c91ba32afaec59009660541f14485de75b367ca96c7f39b88c08e55 MISC metadata.xml 510 BLAKE2B 24ec4c7f0735f04eb58a6382166c3552d329b7b51b1ac4b3ab4522603583c96197d4ddd5081b056b27c50cf13f5814a20cdb8f0716d7b8af8fb276f17d81916b SHA512 876a9ba57d32d3bcb0071d8644a6d050ef67df1a94b90064bd7f7e45ddf44c3efa220c1c9738279892f2c8327da26043c29f8478cfb5599e3e3eda43d99719e8 diff --git a/sci-libs/gerris/gerris-20131206-r1.ebuild b/sci-libs/gerris/gerris-20131206-r1.ebuild index d17000bbe95f..4ddca5bec04a 100644 --- a/sci-libs/gerris/gerris-20131206-r1.ebuild +++ b/sci-libs/gerris/gerris-20131206-r1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=6 -inherit autotools flag-o-matic toolchain-funcs +inherit autotools flag-o-matic toolchain-funcs xdg MY_P=${P/-20/-snapshot-} diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest index b4e439e4685a..11eb3b918ea9 100644 --- a/sci-libs/hdf5/Manifest +++ b/sci-libs/hdf5/Manifest @@ -2,6 +2,6 @@ AUX hdf5-1.8.13-no-messing-ldpath.patch 1141 BLAKE2B d7d186e4c00acb9fd3d44beb1d8 AUX hdf5-1.8.9-mpicxx.patch 494 BLAKE2B 148d87af064e2ba28c918c8db39ece0782a179803e4c38c5cd5eaba81a673bb8aa3699a48e80a7ae2d4579ac0261cc21d5509e46661ada9a69f444a58eb45ecd SHA512 8b4c39e40591860652547ea8ff205230da7d67488233e911cbcb3416eab561f2529c65bc5e7c9c812bf4298812346f47f9209e5f69f7e8f66ad587306a5b477b AUX hdf5-1.8.9-static_libgfortran.patch 429 BLAKE2B 9e1c544a453c09b3498a7d9d3e8090c928571776934c4dd6b426cbdb2783ed8f47185d6ee0c73ede6b4f14e27459ef5e1412112e9d897daa2dc57f1ad5fb0b24 SHA512 af97c54469a90bf3b0e8ec1218d4ca95822ac0cbc7120114979fc467fe3114743c74f4d4e16f0c10b1cd82d40880ef482f6fd34e1effc7c621b981ad466204f9 DIST hdf5-1.10.5.tar.bz2 8706317 BLAKE2B ac326be8fe4ccc4b0153f15bc7d65aa8f1adc2ae279d3980f57ed46722b754d3f36ecf1d6273c75e80ed1afd4bbf10c6b1c5d9408e1f83a4b2e397e7902a7d3c SHA512 769e43b8672e26fe24ed68da0228c010d3d9bc950ca09f0bc60707911a2f26f2f8415c8abc8ec06e07667148d8cdb3b0c7b3e7860d9b19739629c5dfd5ce73d4 -EBUILD hdf5-1.10.5-r1.ebuild 2808 BLAKE2B 4419ea4fa305c0ea3d1793edc380b4e5912a25492eaab28901133a2e8e4be358d3e076fdbf3921fe490b55d32903f58f1fee2f3b088904947fd25cd9c648cf4f SHA512 04f37efdbbe8e91f5ad1713ce2c272ca910a19f64ae4e7ea762a3a3f0ba476c7966d66f3ad56e9b0b9981724f20b0f7c5ddf3a040c721ba307e78176f22359cd +EBUILD hdf5-1.10.5-r1.ebuild 2807 BLAKE2B 23514104cb522f06a54ebb821895367a6514d47e18d42a8be1e633603da33aa795e5ec6c6a875cc4330ce228a47d28881e5aa077f78c66e0bb770fe844997be4 SHA512 dd59891edb4bab6ce5411a3070f7870fb87fe22f097aebd1fa08f749d36bf788d7b9cc57dec440adc67ad5ae046b891da3fe090efe64574c9bd60bba25b10bbe EBUILD hdf5-1.10.5.ebuild 2712 BLAKE2B ee136d4a3c9a7301d4887f5406b208bad88ea16e60bde7e2dd07f4d24d897afbe8575ebc76c96e054b7371a37d275da6f298620c181c13e53a33be0b59ccde9e SHA512 0183dc5aa3d1ac98dd04ddcf0391a97fa48e0647ed838167b54b807ee751f96a774d9c34fb5e6dd965075db8adcb63c852b786b87a017ce5057264a55fff0dc2 MISC metadata.xml 763 BLAKE2B df2fb5f7f3aaa55b77b51d1e874cc4e58dc81d4c9fcc713f01bcd5d197b33d3ea0e300849432255d068b585b129dd0bc75310ea6ebe6d987688a2c621fd8fa75 SHA512 303724cfdf46efa4864e58bb645398472e801d1a22b083947e52aecbf28c7e5c0e16d5752d12927f02874d24270ea64220c42ec75d04d15c014f396523c2b19d diff --git a/sci-libs/hdf5/hdf5-1.10.5-r1.ebuild b/sci-libs/hdf5/hdf5-1.10.5-r1.ebuild index 47f24fba7d92..c3fa2f27d0ca 100644 --- a/sci-libs/hdf5/hdf5-1.10.5-r1.ebuild +++ b/sci-libs/hdf5/hdf5-1.10.5-r1.ebuild @@ -16,7 +16,7 @@ SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_ LICENSE="NCSA-HDF" SLOT="0/${PV%%_p*}" -KEYWORDS="~alpha amd64 ~arm arm64 ~ia64 ppc ppc64 ~sparc x86 ~amd64-linux ~x86-linux" +KEYWORDS="~alpha amd64 arm arm64 ~ia64 ppc ppc64 ~sparc x86 ~amd64-linux ~x86-linux" IUSE="cxx debug examples fortran +hl mpi szip threads unsupported zlib" REQUIRED_USE=" diff --git a/sci-libs/indilib/Manifest b/sci-libs/indilib/Manifest index baaedcde2f6d..61f5ec7306ab 100644 --- a/sci-libs/indilib/Manifest +++ b/sci-libs/indilib/Manifest @@ -2,6 +2,6 @@ DIST indilib-1.7.5.tar.xz 1380436 BLAKE2B 092f4100894218bf749ee0d7c910c4ee20026c DIST indilib-1.8.3.tar.gz 2062250 BLAKE2B f46b557dfbbe16070605ad638111505577b801ac6abc2cf42df3a322eaec35a25e6f8efe3ea740b5758b3aeadd656efb4b98e284d531621ab34ca00f28e39a2e SHA512 09c23299659efea795ec430566a5b51181878c382c72f1e530ef3abe3b996b670506f6f5f1bca4eb88fbdc756854c3a36d8bd646a2cf13e397e09ace1f1af044 DIST indilib-1.8.6.tar.gz 2166393 BLAKE2B 65998b90a66938f0fa7cf702da83c86a0a5d22cde6ebca6ec2e7ab65fb310ef3f6aa0b8ae0ede48cbcd78788741433a43907ea9d020fcf3362d012a1464d1905 SHA512 c966b92cd9d66dcafd26b5ff7b062c22d035367111496c84777dfed5b22403631107f43dcdc535036198d2e108689aa99e003e9ad047a0af687ad247df155850 EBUILD indilib-1.7.5.ebuild 1120 BLAKE2B 70e19ee186e7b74d01430d4fafd2fb15d3850666b519051fa2ab97612fd01180b39e5c37d697d8d2508166ad769b41422f9d4e7e7f0789c1059641d5ee77e40d SHA512 f33e4268c4837c2df6b64bb79abd11479001e9fd9abde0c5357751a014522b37d48878a8f72628e56915487c72b7805ab7c5dd01f61a21c47407a4cda8a00a27 -EBUILD indilib-1.8.3.ebuild 1180 BLAKE2B 57212e677b51f57427debdaa8b1e0eea4f6fb26fba8368b7e2f1e5f4c8d2165406f5a11c17970bd6706782684da9456a4dfb9edf1fec4c8bcf6fbc48cc010a56 SHA512 0ea6c402a6ff57a589f4f3309746de7e1b69c3180d3a12265ffc20ff361f53638eedb0caedee8cec7b3fabc0aeaa573c2998444bb696eb8bc08862e91768cf3c -EBUILD indilib-1.8.6.ebuild 1182 BLAKE2B 72992e4b51b92d044bb0d95ee05d5e9ee23c8cd5bc375df999b5166e5a6241150545cd6ed1de5281833a6218ed3ece509d9e907b1d439016d4d15f4d68578643 SHA512 a5a3f070a4cb27c38108b7adb2a58652d470e0d1880fd4a4381eca74ea0e4d08f8917604748cc5c7de37fd551a18f7bfec2904b58c6132c90b883678b6090a8d +EBUILD indilib-1.8.3.ebuild 1190 BLAKE2B e09d230117079e62df8baefe1933c8d70e76778a1cb34776b02c13a7635e9bec2819315aa7f22010515b5e787525fd30a8af7525369f4fa5563c251696f84639 SHA512 44395e193f3e918f45362995cae6dbc7ea24c0038a7bd4068b684d5684518be7ffbe7dd1d942b1162b4cd2ea87c6ef1754ba388381738eafb79ed00095e84f4e +EBUILD indilib-1.8.6.ebuild 1192 BLAKE2B 0b7e584d556b356999fa46d863ff115638c7941c8cc6b756b10571070d0892f19937ad5b17d72312682d24f3260b227d781c6bdaa4094e89592fb3c14bc7977a SHA512 d28075334e1b6c1410413e1b191a0f8d0410daffe3f0fd823598280d8572013ecb6d3df5728be9ecaad05432a50ca1dc13a8734aa226a6a63e561b59df5f39be MISC metadata.xml 460 BLAKE2B b6ebdd49fefcbbb015e5856f0ad42682b5eda153b38b3d64f949d2c41274df269f292f25d5eb3be37a7acb039bab2d3d3b7744cfe7959472fe03425b53bd4282 SHA512 ff04501f56765165645695dda25db6bff677a6f676d3fa1d005ec0bc6fae7413e0fdd87d800b321fdd7a98f1d0cc829daa5a3d4d3bff849b6e164a5768c79c84 diff --git a/sci-libs/indilib/indilib-1.8.3.ebuild b/sci-libs/indilib/indilib-1.8.3.ebuild index 883a84595b95..8111266706f8 100644 --- a/sci-libs/indilib/indilib-1.8.3.ebuild +++ b/sci-libs/indilib/indilib-1.8.3.ebuild @@ -43,7 +43,7 @@ src_configure() { local mycmakeargs=( -DINDI_BUILD_QT5_CLIENT=OFF -DINDI_BUILD_UNITTESTS=$(usex test) - -DUDEVRULES_INSTALL_DIR="$(get_udevdir)"/rules.d + -DUDEVRULES_INSTALL_DIR="${EPREFIX}$(get_udevdir)"/rules.d $(cmake_use_find_package ogg OggTheora) -DINDI_BUILD_WEBSOCKET=$(usex websocket) ) diff --git a/sci-libs/indilib/indilib-1.8.6.ebuild b/sci-libs/indilib/indilib-1.8.6.ebuild index c0ffca05006a..dc1c02bc3d9b 100644 --- a/sci-libs/indilib/indilib-1.8.6.ebuild +++ b/sci-libs/indilib/indilib-1.8.6.ebuild @@ -43,7 +43,7 @@ src_configure() { local mycmakeargs=( -DINDI_BUILD_QT5_CLIENT=OFF -DINDI_BUILD_UNITTESTS=$(usex test) - -DUDEVRULES_INSTALL_DIR="$(get_udevdir)"/rules.d + -DUDEVRULES_INSTALL_DIR="${EPREFIX}$(get_udevdir)"/rules.d $(cmake_use_find_package ogg OggTheora) -DINDI_BUILD_WEBSOCKET=$(usex websocket) ) diff --git a/sci-libs/keras-preprocessing/Manifest b/sci-libs/keras-preprocessing/Manifest index 17db55bfd7ad..e92a77d1e59e 100644 --- a/sci-libs/keras-preprocessing/Manifest +++ b/sci-libs/keras-preprocessing/Manifest @@ -1,6 +1,8 @@ +DIST Keras_Preprocessing-1.1.2.tar.gz 163598 BLAKE2B 94d0bac41ac140015a5d46453c99e1180c8c06d8fab4d6707890b1f24466d287f6da54d66b395e5e50c7aac67cc0abc8153fbfbeb4ffb0e79561bca528a6b81b SHA512 aae4d52accdfb9df260070336b1c5a628e57563978f7cb299aa67a6265f26eb44deb803cef795616a5e94cd8bcd2b9aa067570258fff96642b88cc0c701c3cec DIST keras-preprocessing-1.0.9.tar.gz 46476 BLAKE2B af80a6647bb56f8c4dba93120bc2b70db36d2c6a0e36c3be9a4843e5c36c9ffe50db1cd9396eecd47f6c0595c110825d70d2e6b28a29a0a199b5cfcc499e4440 SHA512 93ef9b294638bfeaea82170b323f08b261a2519f5ee8b9aac7d88e5b32c6486646d91075cea71bfbc27780c8af55125319873361f0431d48b451e574d1e7a400 DIST keras-preprocessing-1.1.0.tar.gz 50631 BLAKE2B 235a1a7d296684e5405c6472026a53b1930923e74065529ba6921e91bf8849d35c02378f8eeabc4f532a4e25937e8fd8f712a59067c5b358afe10b88e1531fcb SHA512 68c71e82ea2139d3db4142c86a2c404e4d65a9a881f72b07b4ccf28733b93a9e4837f91534a20c3ca5128600d8b885cc8723181d96c9045d5280ad7f84091cbb EBUILD keras-preprocessing-1.0.9.ebuild 595 BLAKE2B bc5f3052d03249c8210460d2b15a3252b4f4818fe8924f885a0cdad36ee429fd22c2f5e31c93306e6014ef42bc8a0c18cc92c4aed579f0c2791570fef63a4765 SHA512 8cb56546d094f03c846d5cf32fb4c38266cc8029e6caca76005f07b3afc5f2a77a28aa571742f77fb640a06e14aa2909d9b319061484e76f08d9230d3552d821 EBUILD keras-preprocessing-1.1.0-r1.ebuild 597 BLAKE2B 226f15626ef1ffdebcb5bba1235ea3bf514f42eaa0579acd44d98c4a9cb5ce6ed7e4e7adc6fe27ef9085053acfb274804640640bd960b20acd85db8b63aafefd SHA512 d0d663f7697d9a76d0c4ee8bd32736a21da91ed12c13f33719ead1d685f6ffced6bc9042a6ea075ffa47f72552bb475ff9d7652b48b446b9cdd43661a095b35f EBUILD keras-preprocessing-1.1.0.ebuild 595 BLAKE2B bc5f3052d03249c8210460d2b15a3252b4f4818fe8924f885a0cdad36ee429fd22c2f5e31c93306e6014ef42bc8a0c18cc92c4aed579f0c2791570fef63a4765 SHA512 8cb56546d094f03c846d5cf32fb4c38266cc8029e6caca76005f07b3afc5f2a77a28aa571742f77fb640a06e14aa2909d9b319061484e76f08d9230d3552d821 +EBUILD keras-preprocessing-1.1.2.ebuild 673 BLAKE2B 0d0247ab25cc2cbd606f9d2141980aca0d7e5580ac713762c3b6f029d2f3d6eb809c68bd254e869d4a44af30aafef071398e43bd231918149dcbed2abd755607 SHA512 4ddaea181fb81d51cb8e05d5d9b8d7254ebd6e3654161866ad72a16f815d8c8da72ed558ec7e75032f2997263cdf8579c3a2e9918adca71cd2b5e3b4287ea6a8 MISC metadata.xml 585 BLAKE2B a2f92ac4e2b9af055313a13de9bcbaee7ab7ca2efa4790c82027aece4b629bfa7a73c5ed0286b0f24f1853330057527009afe6ab1722f19d9c504a9d0737e827 SHA512 371cc3f5897bd28c62642a8857a22e775e24aa917bc0e58bb4de4e0a2a6580174ba35cfda2e8dd83599e2180fdfb3f11a953e7076c6d87073e1465b145b115e9 diff --git a/sci-libs/keras-preprocessing/keras-preprocessing-1.1.2.ebuild b/sci-libs/keras-preprocessing/keras-preprocessing-1.1.2.ebuild new file mode 100644 index 000000000000..f59272ef1161 --- /dev/null +++ b/sci-libs/keras-preprocessing/keras-preprocessing-1.1.2.ebuild @@ -0,0 +1,24 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python3_{6,7,8} ) +inherit distutils-r1 +MY_PN="Keras_Preprocessing" + +DESCRIPTION="Easy data preprocessing and data augmentation for deep learning models" +HOMEPAGE="https://keras.io/" +SRC_URI="https://files.pythonhosted.org/packages/source/${MY_PN::1}/${MY_PN}/${MY_PN}-${PV}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +S="${WORKDIR}/${MY_PN}-${PV}" + +RDEPEND="dev-python/numpy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}]" +DEPEND="${RDEPEND} + dev-python/setuptools[${PYTHON_USEDEP}]" diff --git a/sci-libs/lapack-reference/Manifest b/sci-libs/lapack-reference/Manifest deleted file mode 100644 index a44996bf100f..000000000000 --- a/sci-libs/lapack-reference/Manifest +++ /dev/null @@ -1,13 +0,0 @@ -AUX eselect.lapack.reference 237 BLAKE2B 3b9fda5e3853ba553a56709c1827c17368b1dc6229c2ca97a35220c05bf428fd94b6e855a8d2dada43dcc153af59b1f7aa1f34923e42cc6b679c3e35993e033d SHA512 cd0b5c771e552d348ce87192583bed2dbf9f2c61cbaf512b006dd9da3b36d3f0c8ad24129e595f644fc0472f5e60e0c3c0964ec86f9ece1c0f00e942d2515936 -AUX eselect.lapack.reference-r1 237 BLAKE2B bb87359115ee06d0062ad1013571a8f4e0c19b87f58e5f830334316e3ef19878fad220f7cf3ba05826fa9d1183a74557ee7da33b0bcd873c1e9c9a8b113c6b52 SHA512 f33b5e14184017192a51e6cf9e6c41a55cf79e60f133e1ef552b80fd2c50ad33f8252d20e379e28b283eab3f33c755172e4244bfe7cfbc633db7f8dd8d5537c3 -AUX lapack-reference-3.2.1-parallel-make.patch 4904 BLAKE2B 5885a1cf316c24f5dccf907e8eb5b4d3d3e8c0322de86230686abbb8120e3b85ba2a2e627076d5daf74213f6868a83803bc2e9ef53fd16e8a0b2c8f910eb3bfb SHA512 2d42f14ddfd78f9f1566e3f31c03b74fe41f6b93a12156554b884b82496f6777781290167597ac220c3fff89edd055952a208c49835a69f745d728fcef605a78 -AUX lapack-reference-3.6.0-fix-build-system.patch 3061 BLAKE2B 22a7be4c561ffd3448810f6fd69ea4e9ae3499432a089ddfb5073038c7f42d2dc05ae15d55a53f341b9016ac77ca4ec8905aee9e8a734c207727fc6081812938 SHA512 db15b9ddde46cb41adf43f060ec46a5cd76a337bc9f3a33bf8ce66c65c7199ecff6e776b53b0ecca5057470a81e7cc470697907d6563462230ff23b1af913d73 -AUX lapack-reference-3.7.0-fix-build-system.patch 1598 BLAKE2B 9128036fc47dae239445162f98d2f7d1d86a5ad6d8c9517879cc4cb58a3d1f0f74b6a70704b2ae5089085cde4acb75bbf82d4aca218b7e7b05cf95f7061e1460 SHA512 3bcd21cc437fa62b1b74ec26908a882e69e413987a2d92832e5c62ed044230b1ac285401c6042c609b2a732320fd660979b812f9279f9eca7bb078ea3fce37b6 -DIST lapack-3.2.1.tgz 4792502 BLAKE2B e9d39c958406db05383ebda7e781ae6c2d0b1f3896d4071a33bec0c7038f9ffca3e254f8ef36aa27118c83a1e5df9110c57ce90ab897e0f8f0ca5750d20cba0e SHA512 a89b88540f8e5b05b7c58e8e301a5068729ceb35fcb2143edfff1644458ff1a375e5185492cf116b50409fe0c17b51c253a2987f4df83e9f9c3968a4b77e5d97 -DIST lapack-3.6.0.tgz 6792324 BLAKE2B 438f3376b63b38ef0fe70f6becac847816f3a11c01f5ab237dc0d941792ceb54dbd2f8dc22d56286f5dab3499289ed94e67521ea951a98973c9640abc294ad6c SHA512 bc50441d415ef8896dd7626d77c6104184b996e758704366288089f03d4c99d068e33153b0d13305310886017e5d2e716130f812a95cfcad36ef37fe20417ab8 -DIST lapack-3.7.0.tgz 7359812 BLAKE2B 20aa42e22d8c920d1360afe41ceec7b36f6cd5fbe43ca9d7848ef7cc45a64a0314cb1321941c1a7c03654f41e28ec805445882ded0ca0ea07674e70b66cba6b5 SHA512 e4f4c7d0ba8a096eeb813160c6dbcdd535647df6b2ad5beac9181908158956b31d1a9554ec9b9836fd44fe7404c1f377b297cbb20d744f20d70e357fd246c91b -DIST lapack-reference-3.2.1-autotools.patch.bz2 13338 BLAKE2B 1be1d2c273b92a106a9c914f17e0350b44fc42b3837ee48b040d7a61802bf5036c30e8800ec613ccf12a082a7801cad6878b6ddcbd4db32e27a06b7462f8ecd2 SHA512 957e8c7646a0d6ade9c0dfdaf2aa665a01f932dfda376ba1db164106fb174793e6504cdbed7daf158f23bb69502937963cb2e2d45ac720980d3832f6fc0fedbd -EBUILD lapack-reference-3.2.1-r4.ebuild 2823 BLAKE2B a086405347206ed704889e793c05fe99488ee0dbefba609ea8a05913473e4c3b8aedafdeddd30261a33a9c98a140c508e3b06b675a80409fe3bf60a660dd174c SHA512 b6d3e0edf17e95b686201c278f0b1ef5bb4e55e1d42edc99edc462e0693c3fac2601e0705b8a2801d1b2267a283a67aa7abbc4867857b917cc338715885cb909 -EBUILD lapack-reference-3.6.0.ebuild 2622 BLAKE2B 1059d64fba18d9c91da283fd82b42baeefd6223bf18f04b3e7b38762b709b9335367a2af13ef1a3bd45cc228fc80b7ed2ccf12b67ee0b1513b92f12ebc14b2c1 SHA512 bdc1587e0e3d035bf5959e564ee3247531f286908dde35f8691c58c538d163895fdd40a9bf0a402aad1c370e5859b7c09c8ad44fc0934b5464a5082f463d0c79 -EBUILD lapack-reference-3.7.0.ebuild 2860 BLAKE2B a2c723501a2468be083de147ab99b7aff66ac02f4cdd72129dbf83df2881f64def8ae58cc5946478ddfde0cbb4a89f668d85301bb7c92c3686c08caabe205738 SHA512 c84d6f6650298f1d3b41cfa689c0b41ebdabecf7e9dddaa67b9069280c92fa0f73f1e115829a095e87ee3785f93fae4b5cf1c277c1251a8ca90ebdfc4496ff76 -MISC metadata.xml 779 BLAKE2B 64433bf79744cecd4ce505c3643ff73d3355620749b344ab27324c80ecb7b3ad9dd02a05dbbf1bd3e8174cac947c236d80f51377c259a1ff3aaa17b9908a8a0e SHA512 a72591749a3ea6ac49ce3a20d6934042c54e0b1639d00d585bdcc88cd9425d31135d8acc4ee33856f3933cc2518e5c7354d6debc20bbcc7b701cd6978f474e6f diff --git a/sci-libs/lapack-reference/files/eselect.lapack.reference b/sci-libs/lapack-reference/files/eselect.lapack.reference deleted file mode 100644 index fe1a777b2dc2..000000000000 --- a/sci-libs/lapack-reference/files/eselect.lapack.reference +++ /dev/null @@ -1,4 +0,0 @@ -lapack/reference/liblapack.so /usr/@LIBDIR@/liblapack.so -lapack/reference/liblapack.so.0 /usr/@LIBDIR@/liblapack.so.0 -lapack/reference/liblapack.a /usr/@LIBDIR@/liblapack.a -../lapack/reference/lapack.pc /usr/@LIBDIR@/pkgconfig/lapack.pc diff --git a/sci-libs/lapack-reference/files/eselect.lapack.reference-r1 b/sci-libs/lapack-reference/files/eselect.lapack.reference-r1 deleted file mode 100644 index b6c4db325593..000000000000 --- a/sci-libs/lapack-reference/files/eselect.lapack.reference-r1 +++ /dev/null @@ -1,4 +0,0 @@ -lapack/reference/liblapack.so /usr/@LIBDIR@/liblapack.so -lapack/reference/liblapack.so.3 /usr/@LIBDIR@/liblapack.so.3 -lapack/reference/liblapack.a /usr/@LIBDIR@/liblapack.a -../lapack/reference/lapack.pc /usr/@LIBDIR@/pkgconfig/lapack.pc diff --git a/sci-libs/lapack-reference/files/lapack-reference-3.2.1-parallel-make.patch b/sci-libs/lapack-reference/files/lapack-reference-3.2.1-parallel-make.patch deleted file mode 100644 index 72bc71ca2d95..000000000000 --- a/sci-libs/lapack-reference/files/lapack-reference-3.2.1-parallel-make.patch +++ /dev/null @@ -1,112 +0,0 @@ -diff -Nauru lapack-3.2.1.old/TESTING/EIG/Makefile lapack-3.2.1/TESTING/EIG/Makefile ---- lapack-3.2.1.old/TESTING/EIG/Makefile 2008-11-17 17:51:24.000000000 -0500 -+++ lapack-3.2.1/TESTING/EIG/Makefile 2009-12-12 11:23:22.000000000 -0500 -@@ -126,25 +126,25 @@ - double: ../xeigtstd - complex16: ../xeigtstz - --../xeigtsts: $(SEIGTST) $(SCIGTST) $(AEIGTST) ; \ -- $(LOADER) $(LOADOPTS) -o xeigtsts \ -- $(SEIGTST) $(SCIGTST) $(AEIGTST) ../../$(TMGLIB) \ -- ../../$(LAPACKLIB) $(BLASLIB) && mv xeigtsts $@ -- --../xeigtstc: $(CEIGTST) $(SCIGTST) $(AEIGTST) ; \ -- $(LOADER) $(LOADOPTS) -o xeigtstc \ -- $(CEIGTST) $(SCIGTST) $(AEIGTST) ../../$(TMGLIB) \ -- ../../$(LAPACKLIB) $(BLASLIB) && mv xeigtstc $@ -- --../xeigtstd: $(DEIGTST) $(DZIGTST) $(AEIGTST) ; \ -- $(LOADER) $(LOADOPTS) -o xeigtstd \ -- $(DEIGTST) $(DZIGTST) $(AEIGTST) ../../$(TMGLIB) \ -- ../../$(LAPACKLIB) $(BLASLIB) && mv xeigtstd $@ -- --../xeigtstz: $(ZEIGTST) $(DZIGTST) $(AEIGTST) ; \ -- $(LOADER) $(LOADOPTS) -o xeigtstz \ -- $(ZEIGTST) $(DZIGTST) $(AEIGTST) ../../$(TMGLIB) \ -- ../../$(LAPACKLIB) $(BLASLIB) && mv xeigtstz $@ -+../xeigtsts: $(SEIGTST) $(SCIGTST) $(AEIGTST) -+ $(LOADER) $(LOADOPTS) \ -+ $(SEIGTST) $(SCIGTST) $(AEIGTST) ../../$(TMGLIB) \ -+ ../../$(LAPACKLIB) $(BLASLIB) -o ../xeigtsts -+ -+../xeigtstc: $(CEIGTST) $(SCIGTST) $(AEIGTST) -+ $(LOADER) $(LOADOPTS) \ -+ $(CEIGTST) $(SCIGTST) $(AEIGTST) ../../$(TMGLIB) \ -+ ../../$(LAPACKLIB) $(BLASLIB) -o ../xeigtstc -+ -+../xeigtstd: $(DEIGTST) $(DZIGTST) $(AEIGTST) -+ $(LOADER) $(LOADOPTS) \ -+ $(DEIGTST) $(DZIGTST) $(AEIGTST) ../../$(TMGLIB) \ -+ ../../$(LAPACKLIB) $(BLASLIB) -o ../xeigtstd -+ -+../xeigtstz: $(ZEIGTST) $(DZIGTST) $(AEIGTST) -+ $(LOADER) $(LOADOPTS) \ -+ $(ZEIGTST) $(DZIGTST) $(AEIGTST) ../../$(TMGLIB) \ -+ ../../$(LAPACKLIB) $(BLASLIB) -o ../xeigtstz - - $(AEIGTST): $(FRC) - $(SCIGTST): $(FRC) -@@ -169,4 +169,5 @@ - zchkee.o: zchkee.f - $(FORTRAN) $(DRVOPTS) -c $< -o $@ - --.f.o : ; $(FORTRAN) $(OPTS) -c $< -o $@ -+.f.o : -+ $(FORTRAN) $(OPTS) -c $< -o $@ -diff -Nauru lapack-3.2.1.old/TESTING/LIN/Makefile lapack-3.2.1/TESTING/LIN/Makefile ---- lapack-3.2.1.old/TESTING/LIN/Makefile 2009-02-10 12:23:05.000000000 -0500 -+++ lapack-3.2.1/TESTING/LIN/Makefile 2009-12-12 07:22:41.000000000 -0500 -@@ -238,43 +238,43 @@ - - ../xlintsts : $(ALINTST) $(SLINTST) $(SCLNTST) - $(LOADER) $(LOADOPTS) $(ALINTST) $(SCLNTST) $(SLINTST) \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o xlintsts && mv xlintsts $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o ../xlintsts - - ../xlintstc : $(ALINTST) $(CLINTST) $(SCLNTST) - $(LOADER) $(LOADOPTS) $(ALINTST) $(SCLNTST) $(CLINTST) \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o xlintstc && mv xlintstc $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o ../xlintstc - - ../xlintstd : $(ALINTST) $(DLINTST) $(DZLNTST) - $(LOADER) $(LOADOPTS) $^ \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o xlintstd && mv xlintstd $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o ../xlintstd - - ../xlintstz : $(ALINTST) $(ZLINTST) $(DZLNTST) - $(LOADER) $(LOADOPTS) $(ALINTST) $(DZLNTST) $(ZLINTST) \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o xlintstz && mv xlintstz $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(XBLASLIB) $(BLASLIB) -o ../xlintstz - - ../xlintstds : $(DSLINTST) - $(LOADER) $(LOADOPTS) $(DSLINTST) \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o xlintstds && mv xlintstds $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o ../xlintstds - - ../xlintstzc : $(ZCLINTST) - $(LOADER) $(LOADOPTS) $(ZCLINTST) \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o xlintstzc && mv xlintstzc $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o ../xlintstzc - - ../xlintstrfs : $(SLINTSTRFP) - $(LOADER) $(LOADOPTS) $(SLINTSTRFP) \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o xlintstrfs && mv xlintstrfs $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o ../xlintstrfs - - ../xlintstrfd : $(DLINTSTRFP) - $(LOADER) $(LOADOPTS) $(DLINTSTRFP) \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o xlintstrfd && mv xlintstrfd $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o ../xlintstrfd - - ../xlintstrfc : $(CLINTSTRFP) - $(LOADER) $(LOADOPTS) $(CLINTSTRFP) \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o xlintstrfc && mv xlintstrfc $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o ../xlintstrfc - - ../xlintstrfz : $(ZLINTSTRFP) - $(LOADER) $(LOADOPTS) $(ZLINTSTRFP) \ -- ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o xlintstrfz && mv xlintstrfz $@ -+ ../../$(TMGLIB) ../../$(LAPACKLIB) $(BLASLIB) -o ../xlintstrfz - - $(ALINTST): $(FRC) - $(SCLNTST): $(FRC) diff --git a/sci-libs/lapack-reference/files/lapack-reference-3.6.0-fix-build-system.patch b/sci-libs/lapack-reference/files/lapack-reference-3.6.0-fix-build-system.patch deleted file mode 100644 index 8661709d369b..000000000000 --- a/sci-libs/lapack-reference/files/lapack-reference-3.6.0-fix-build-system.patch +++ /dev/null @@ -1,92 +0,0 @@ ---- lapack-3.6.0/BLAS/blas.pc.in -+++ lapack-3.6.0/BLAS/blas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: blas - Description: Basic Linear Algebra Subprograms F77 reference implementations ---- lapack-3.6.0/BLAS/CMakeLists.txt -+++ lapack-3.6.0/BLAS/CMakeLists.txt -@@ -2,7 +2,7 @@ - if(BUILD_TESTING) - add_subdirectory(TESTING) - endif(BUILD_TESTING) --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/blas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/blas.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/blas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/blas.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/blas.pc - DESTINATION ${PKG_CONFIG_DIR} ---- lapack-3.6.0/CBLAS/cblas.pc.in -+++ lapack-3.6.0/CBLAS/cblas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: lapacke - Description: C Standard Interface to BLAS Linear Algebra PACKage ---- lapack-3.6.0/CBLAS/CMakeLists.txt -+++ lapack-3.6.0/CBLAS/CMakeLists.txt -@@ -71,7 +71,7 @@ - ${LAPACK_BINARY_DIR}/cblas-config.cmake @ONLY) - - --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cblas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/cblas.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cblas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/cblas.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/cblas.pc - DESTINATION ${PKG_CONFIG_DIR} ---- lapack-3.6.0/CMakeLists.txt -+++ lapack-3.6.0/CMakeLists.txt -@@ -333,7 +333,7 @@ - ${LAPACK_BINARY_DIR}/lapack-config.cmake @ONLY) - - --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapack.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapack.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapack.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapack.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/lapack.pc - DESTINATION ${PKG_CONFIG_DIR} ---- lapack-3.6.0/LAPACKE/CMakeLists.txt -+++ lapack-3.6.0/LAPACKE/CMakeLists.txt -@@ -65,7 +65,7 @@ - endif(BUILD_TESTING) - - --configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapacke.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapacke.pc) -+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/lapacke.pc.in ${CMAKE_CURRENT_BINARY_DIR}/lapacke.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/lapacke.pc - DESTINATION ${PKG_CONFIG_DIR} ---- lapack-3.6.0/LAPACKE/lapacke.pc.in -+++ lapack-3.6.0/LAPACKE/lapacke.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: lapacke - Description: C Standard Interface to LAPACK Linear Algebra PACKage ---- lapack-3.6.0/lapack.pc.in -+++ lapack-3.6.0/lapack.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: lapack - Description: FORTRAN reference implementation of LAPACK Linear Algebra PACKage diff --git a/sci-libs/lapack-reference/files/lapack-reference-3.7.0-fix-build-system.patch b/sci-libs/lapack-reference/files/lapack-reference-3.7.0-fix-build-system.patch deleted file mode 100644 index 70f7cb0ee926..000000000000 --- a/sci-libs/lapack-reference/files/lapack-reference-3.7.0-fix-build-system.patch +++ /dev/null @@ -1,56 +0,0 @@ -diff --git a/BLAS/blas.pc.in b/BLAS/blas.pc.in -index 7fd6f1e..e52f3ad 100644 ---- a/BLAS/blas.pc.in -+++ b/BLAS/blas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: BLAS - Description: FORTRAN reference implementation of BLAS Basic Linear Algebra Subprograms -diff --git a/CBLAS/cblas.pc.in b/CBLAS/cblas.pc.in -index 4a938fe..311aed9 100644 ---- a/CBLAS/cblas.pc.in -+++ b/CBLAS/cblas.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: CBLAS - Description: C Standard Interface to BLAS Basic Linear Algebra Subprograms -diff --git a/LAPACKE/lapacke.pc.in b/LAPACKE/lapacke.pc.in -index 028f8da..dc092b1 100644 ---- a/LAPACKE/lapacke.pc.in -+++ b/LAPACKE/lapacke.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: LAPACKE - Description: C Standard Interface to LAPACK Linear Algebra PACKage -diff --git a/lapack.pc.in b/lapack.pc.in -index 878efc2..2cca4c2 100644 ---- a/lapack.pc.in -+++ b/lapack.pc.in -@@ -1,5 +1,7 @@ --prefix=@prefix@ --libdir=@libdir@ -+prefix=@CMAKE_INSTALL_PREFIX@ -+exec_prefix=${prefix} -+libdir=${exec_prefix}/@CMAKE_INSTALL_LIBDIR@ -+includedir=${prefix}/include - - Name: LAPACK - Description: FORTRAN reference implementation of LAPACK Linear Algebra PACKage diff --git a/sci-libs/lapack-reference/lapack-reference-3.2.1-r4.ebuild b/sci-libs/lapack-reference/lapack-reference-3.2.1-r4.ebuild deleted file mode 100644 index b9ee0e8c6fee..000000000000 --- a/sci-libs/lapack-reference/lapack-reference-3.2.1-r4.ebuild +++ /dev/null @@ -1,100 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit autotools eutils fortran-2 flag-o-matic multilib toolchain-funcs - -MyPN="${PN/-reference/}" -PATCH_V="3.2.1" - -DESCRIPTION="FORTRAN reference implementation of LAPACK Linear Algebra PACKage" -HOMEPAGE="http://www.netlib.org/lapack/index.html" -SRC_URI=" - mirror://gentoo/${MyPN}-${PV}.tgz - mirror://gentoo/${PN}-${PATCH_V}-autotools.patch.bz2" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha amd64 arm arm64 hppa ~ia64 ppc ppc64 s390 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos" -IUSE="doc" - -RDEPEND=" - app-eselect/eselect-lapack - virtual/blas" -DEPEND=" - ${RDEPEND} - virtual/pkgconfig - doc? ( app-doc/lapack-docs )" - -S="${WORKDIR}/${MyPN}-${PV}" - -pkg_setup() { - fortran-2_pkg_setup - if [[ $(tc-getFC) =~ if ]]; then - ewarn "Using Intel Fortran at your own risk" - export LDFLAGS="$(raw-ldflags)" - export NOOPT_FFLAGS=-O - fi - ESELECT_PROF=reference -} - -src_prepare() { - epatch \ - "${WORKDIR}"/${PN}-${PATCH_V}-autotools.patch \ - "${FILESDIR}"/${P}-parallel-make.patch - eautoreconf - - # set up the testing routines - sed \ - -e "s:g77:$(tc-getFC):" \ - -e "s:-funroll-all-loops -O3:${FFLAGS} $($(tc-getPKG_CONFIG) --cflags blas):" \ - -e "s:LOADOPTS =:LOADOPTS = ${LDFLAGS} $($(tc-getPKG_CONFIG) --cflags blas):" \ - -e "s:../../blas\$(PLAT).a:$($(tc-getPKG_CONFIG) --libs blas):" \ - -e "s:lapack\$(PLAT).a:SRC/.libs/liblapack.a:" \ - make.inc.example > make.inc \ - || die "Failed to set up make.inc" - - cp "${FILESDIR}"/eselect.lapack.reference "${T}"/eselect.lapack.reference || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.lapack.reference || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.lapack.reference || die - fi - sed \ - -e '/Libs:/s|: |: -L${libdir} |g' \ - -i lapack.pc.in || die -} - -src_configure() { - econf \ - --libdir="${EPREFIX}/usr/$(get_libdir)/lapack/reference" \ - --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" -} - -src_install() { - default - eselect lapack add $(get_libdir) "${T}"/eselect.lapack.reference ${ESELECT_PROF} -} - -src_test() { - MAKEOPTS+=" -j1" - cd "${S}"/TESTING/MATGEN && emake - cd "${S}"/TESTING && emake -} - -pkg_postinst() { - local p=lapack - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/lapack-reference/lapack-reference-3.6.0.ebuild b/sci-libs/lapack-reference/lapack-reference-3.6.0.ebuild deleted file mode 100644 index a3080330b1ff..000000000000 --- a/sci-libs/lapack-reference/lapack-reference-3.6.0.ebuild +++ /dev/null @@ -1,90 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils fortran-2 cmake-utils multilib flag-o-matic toolchain-funcs - -DESCRIPTION="Reference implementation of LAPACK" -HOMEPAGE="http://www.netlib.org/lapack/" -SRC_URI="http://www.netlib.org/lapack/lapack-${PV}.tgz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~hppa ~ia64 ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos" -IUSE="+deprecated" - -DEPEND="app-eselect/eselect-lapack - >=virtual/blas-3.6 - virtual/pkgconfig" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/lapack-${PV}" -PATCHES=( "${FILESDIR}/${P}-fix-build-system.patch" ) - -src_prepare() { - cmake-utils_src_prepare - - ESELECT_PROF=reference - - # some string does not get passed properly - sed -i \ - -e '/lapack_testing.py/d' \ - CTestCustom.cmake.in || die - # separate ebuild to tmglib - sed -i \ - -e '/lapack_install_library(tmglib)/d' \ - TESTING/MATGEN/CMakeLists.txt || die - - cp "${FILESDIR}"/eselect.lapack.reference-r1 "${T}"/eselect.lapack.reference || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.lapack.reference || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.lapack.reference || die - fi -} - -src_configure() { - local mycmakeargs=( - -Wno-dev - -DUSE_OPTIMIZED_BLAS=ON - -DBLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas)" - -DBUILD_DEPRECATED=$(usex deprecated) - -DCMAKE_Fortran_FLAGS="$($(tc-getPKG_CONFIG) --cflags blas) $(get_abi_CFLAGS) ${FCFLAGS}" - -DBUILD_STATIC_LIBS=ON - -DBUILD_SHARED_LIBS=ON - ) - - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile -} - -src_install() { - cmake-utils_src_install - - mkdir -p "${ED}/usr/$(get_libdir)/lapack/reference" || die - mv "${ED}/usr/$(get_libdir)"/lib* "${ED}/usr/$(get_libdir)/pkgconfig"/* \ - "${ED}/usr/$(get_libdir)/lapack/reference" || die - rmdir "${ED}/usr/$(get_libdir)/pkgconfig" || die - - eselect lapack add $(get_libdir) "${T}"/eselect.lapack.reference ${ESELECT_PROF} -} - -pkg_postinst() { - local p=lapack - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/lapack-reference/lapack-reference-3.7.0.ebuild b/sci-libs/lapack-reference/lapack-reference-3.7.0.ebuild deleted file mode 100644 index 32c1ba6cfd12..000000000000 --- a/sci-libs/lapack-reference/lapack-reference-3.7.0.ebuild +++ /dev/null @@ -1,97 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils fortran-2 cmake-utils multilib flag-o-matic toolchain-funcs - -DESCRIPTION="Reference implementation of LAPACK" -HOMEPAGE="http://www.netlib.org/lapack/" -SRC_URI="http://www.netlib.org/lapack/lapack-${PV}.tgz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos" -IUSE="+deprecated" - -DEPEND="app-eselect/eselect-lapack - >=virtual/blas-3.6 - virtual/pkgconfig" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/lapack-${PV}" -PATCHES=( "${FILESDIR}/${P}-fix-build-system.patch" ) - -src_prepare() { - cmake-utils_src_prepare - - ESELECT_PROF=reference - - # some string does not get passed properly - sed -i \ - -e '/lapack_testing.py/d' \ - CTestCustom.cmake.in || die - # separate ebuild to tmglib - sed -i \ - -e '/lapack_install_library(tmglib)/d' \ - TESTING/MATGEN/CMakeLists.txt || die - - cp "${FILESDIR}"/eselect.lapack.reference-r1 "${T}"/eselect.lapack.reference || die - sed -i -e "s:/usr:${EPREFIX}/usr:" "${T}"/eselect.lapack.reference || die - if [[ ${CHOST} == *-darwin* ]] ; then - sed -i -e 's/\.so\([\.0-9]\+\)\?/\1.dylib/g' \ - "${T}"/eselect.lapack.reference || die - fi -} - -src_configure() { - local mycmakeargs=( - -Wno-dev - -DUSE_OPTIMIZED_BLAS=ON - -DBLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas)" - -DBUILD_DEPRECATED=$(usex deprecated) - -DCMAKE_Fortran_FLAGS="$($(tc-getPKG_CONFIG) --cflags blas) $(get_abi_CFLAGS) ${FCFLAGS}" - -DBUILD_STATIC_LIBS=ON - -DBUILD_SHARED_LIBS=ON - ) - - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile -} - -src_install() { - cmake-utils_src_install - - mkdir -p "${ED}/usr/$(get_libdir)/lapack/reference" || die - mv "${ED}/usr/$(get_libdir)"/lib* "${ED}/usr/$(get_libdir)/pkgconfig"/* \ - "${ED}/usr/$(get_libdir)/lapack/reference" || die - if [[ ${CHOST} == *-darwin* ]] ; then - # modify install_names accordingly, bug #608266 - local lib - for lib in "${ED}"/usr/$(get_libdir)/lapack/reference/*.dylib ; do - install_name_tool -id "${lib#${D%/}}" "${lib}" - done - fi - rmdir "${ED}/usr/$(get_libdir)/pkgconfig" || die - - eselect lapack add $(get_libdir) "${T}"/eselect.lapack.reference ${ESELECT_PROF} -} - -pkg_postinst() { - local p=lapack - local current_lib=$(eselect ${p} show | cut -d' ' -f2) - if [[ ${current_lib} == ${ESELECT_PROF} || -z ${current_lib} ]]; then - # work around eselect bug #189942 - local configfile="${EROOT}"/etc/env.d/${p}/$(get_libdir)/config - [[ -e ${configfile} ]] && rm -f ${configfile} - eselect ${p} set ${ESELECT_PROF} - elog "${p} has been eselected to ${ESELECT_PROF}" - else - elog "Current eselected ${p} is ${current_lib}" - elog "To use ${p} ${ESELECT_PROF} implementation, you have to issue (as root):" - elog "\t eselect ${p} set ${ESELECT_PROF}" - fi -} diff --git a/sci-libs/lapack-reference/metadata.xml b/sci-libs/lapack-reference/metadata.xml deleted file mode 100644 index 9bd49b11cd5c..000000000000 --- a/sci-libs/lapack-reference/metadata.xml +++ /dev/null @@ -1,19 +0,0 @@ - - - - - sci@gentoo.org - Gentoo Science Project - - -LAPACK is a comprehensive library that does linear algebra -operations including matrix inversions, least squared solutions to -linear sets of equations, eigenvector analysis, singular value -decomposition, etc. It is a very comprehensive and reputable package -that has found extensive use in the scientific community. -This package installs the reference FORTRAN 77 implementation from Netlib. - - - Build deprecated routines - - diff --git a/sci-libs/lapack/Manifest b/sci-libs/lapack/Manifest index bd36f953d608..1eac2c0fcc29 100644 --- a/sci-libs/lapack/Manifest +++ b/sci-libs/lapack/Manifest @@ -1,7 +1,7 @@ AUX lapack-3.9.0-build-tests.patch 591 BLAKE2B 3db7dad6b798e5e9a4d050b05ef318aebd564d7fca3b3ac12c44f460eb6653693476f016c8a4d6369e4f4e4aa06aa7bf4a1cea38083758e8257f8cfd36c41d9f SHA512 642073d65ab1d5b7beb06e90cd4777ed89f4a76dcd5ec26025fa254ab243c8c09dcd4ca17b8d406e55cdbd302eab36f34a429dc3963a11827209246ebf2251cd DIST lapack-3.8.0.tar.gz 7426094 BLAKE2B 27cd75eea498250382b2df6f5d7dc95fdee8d37b1a0faba5296ca0145ec40a1165a4ecc727aa1647086be6783b50cf475f79cea0f30f541da789051db99b2f37 SHA512 17786cb7306fccdc9b4a242de7f64fc261ebe6a10b6ec55f519deb4cb673cb137e8742aa5698fd2dc52f1cd56d3bd116af3f593a01dcf6770c4dcc86c50b2a7f DIST lapack-3.9.0.tar.gz 7534567 BLAKE2B 408013a11a72e0262d144adfdf6db28a6efa3bb5446f9ff959bb88fe10459dfa621149ed0144630a55e73e3b5be3c704269a716eb195f6db7b39d345b4db8270 SHA512 424956ad941a60a4b71e0d451ad48db12a692f8a71a90f3ca7f71d6ecc1922f392746ea84df1c47a46577ed2db32e9e47ec44ad248207c5ac7da179becb712ef -EBUILD lapack-3.8.0-r1.ebuild 3011 BLAKE2B a8efb95f7d55e08b16cd1e784fdf25b57f45ce1182fd5b461384bef75ae3abc5efc49066ab9f1e015c2861f0ff1fb5039db079bb48bb18899ce521a6f07798d2 SHA512 d46ec6260889139d1b721a88de7e2b428742238fde74555dc933d02820835fe804394f401ebf6d605b08016da803ac33f726545fea2f567ece89c99d0113cb2e -EBUILD lapack-3.8.0.ebuild 2959 BLAKE2B 415318e59b79d7bca4a4faefcc7f6b080287589eab098cbd32d72d77ad31b28ba9d6536527308340feeb6141cb8439bed73d18fd7f3b4b403cbcb5e3661765f1 SHA512 aed62d7a3b58f0bb4e658ddae720ce3b872aa5416b9aa54b30cca1beb2c4350a8ce0899ba7de1cf7e4782e459baf56b8ba4ac2306b8f9e6fb0ab412d2da88ffb -EBUILD lapack-3.9.0.ebuild 3105 BLAKE2B cf20345444e6a2a9ed6fe8ef7310d4d8903dc288e64e55b9a2e63dcaf3e5af04c2841de5b8245c117f498f64add85ac95c378d12a9e1bc20f234d85bc4b6f809 SHA512 7b8b2f77ef85cf31827e6a4609cc7d091ed998e7b0d3427c7ec380651cf87d4d2241227d15ad46a27e95826defc56bd31616fbd1340891b5029bc79e597a71e4 +EBUILD lapack-3.8.0-r1.ebuild 2901 BLAKE2B d5f74beb2ce42286073f0814de763d0a2766d6164cc79a1e462e0023c43df99187159c9326d0ceda48bb0c2d7f5982acb7d53851d0343d65b787517bb7114e5a SHA512 5f80710f037904ecaa7c8c252f0f0ab71e2a33fad7f70f1a9c86aebf67ab869e229590afac775753d159516f953b6b60228f3262f5e63e7441d727e975b44237 +EBUILD lapack-3.8.0.ebuild 2849 BLAKE2B cf64c5d2a2c49b23821c8f66751fd14886444ba89d6f77b26be33eab76991ed587a1eecdb4d2422c35b184e716af888490ca400a404c50f3de0118e9afa5dd30 SHA512 9dd9b8ed862a6d3961766fc8e550d04991b69d3d4ef1c9d3b5eb1e5df893eb6fd90b29d10cf9078a172cb0210a4f25c179ebf1a11fc470ec9964481dfa8b74bf +EBUILD lapack-3.9.0.ebuild 2988 BLAKE2B 0c9c7694ea6adfe6d4d05a207f82d9da54ad7ee8b05c230589f834117c3995e90a046085d69ef4112518dd21df6506f55c939240d00c2cfeaba5f85899d05155 SHA512 f7447bd24d4526a9dfe1d04ecd58a16a7624d714cd876b9d765186e2e3ffc665ba3d0fc369c55a1cc50c5e4403d4b6964784b6929e3450c4f11f21019cf2666c MISC metadata.xml 1490 BLAKE2B bcb933b7cc3c3ae6f33e7c8ae9ef12475477ecd3351901cfba5dc955430def35df18e5ab41624cb99f2c1551fc38153138195e4e95ab40d3cf92e5685ce68fc5 SHA512 a99af3086d63488e7a2b8cda2f3727ce31eb0e62dd75a9cf64e44a203068866a06c7d6e119665e663c49a1afccb7a70982fd831735d958b73b6dcdf52c8ef5b1 diff --git a/sci-libs/lapack/lapack-3.8.0-r1.ebuild b/sci-libs/lapack/lapack-3.8.0-r1.ebuild index fe759a13f358..47bcb4605cab 100644 --- a/sci-libs/lapack/lapack-3.8.0-r1.ebuild +++ b/sci-libs/lapack/lapack-3.8.0-r1.ebuild @@ -19,10 +19,6 @@ RDEPEND=" eselect-ldso? ( >=app-eselect/eselect-blas-0.2 >=app-eselect/eselect-lapack-0.2 ) !app-eselect/eselect-cblas - !sci-libs/blas-reference - !sci-libs/cblas-reference - !sci-libs/lapack-reference - !sci-libs/lapacke-reference virtual/fortran doc? ( app-doc/blas-docs )" DEPEND="${RDEPEND} diff --git a/sci-libs/lapack/lapack-3.8.0.ebuild b/sci-libs/lapack/lapack-3.8.0.ebuild index 7b7241aeb315..d661b9b9be54 100644 --- a/sci-libs/lapack/lapack-3.8.0.ebuild +++ b/sci-libs/lapack/lapack-3.8.0.ebuild @@ -19,10 +19,6 @@ RDEPEND=" eselect-ldso? ( >=app-eselect/eselect-blas-0.2 >=app-eselect/eselect-lapack-0.2 ) !app-eselect/eselect-cblas - !sci-libs/blas-reference - !sci-libs/cblas-reference - !sci-libs/lapack-reference - !sci-libs/lapacke-reference virtual/fortran doc? ( app-doc/blas-docs )" DEPEND="${RDEPEND} diff --git a/sci-libs/lapack/lapack-3.9.0.ebuild b/sci-libs/lapack/lapack-3.9.0.ebuild index 87c344ba13b5..311a994271d3 100644 --- a/sci-libs/lapack/lapack-3.9.0.ebuild +++ b/sci-libs/lapack/lapack-3.9.0.ebuild @@ -12,7 +12,7 @@ SRC_URI="https://github.com/Reference-LAPACK/lapack/archive/v${PV}.tar.gz -> ${P LICENSE="BSD" SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos" +KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ~mips ppc ppc64 ~s390 sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos" IUSE="lapacke doc eselect-ldso test" # TODO: static-libs 64bit-index RESTRICT="!test? ( test )" @@ -21,10 +21,6 @@ RDEPEND=" eselect-ldso? ( >=app-eselect/eselect-blas-0.2 >=app-eselect/eselect-lapack-0.2 ) !app-eselect/eselect-cblas - !sci-libs/blas-reference - !sci-libs/cblas-reference - !sci-libs/lapack-reference - !sci-libs/lapacke-reference virtual/fortran doc? ( app-doc/blas-docs )" DEPEND="${RDEPEND} diff --git a/sci-libs/libaec/Manifest b/sci-libs/libaec/Manifest index 816054bbb24e..5294cf0587f0 100644 --- a/sci-libs/libaec/Manifest +++ b/sci-libs/libaec/Manifest @@ -1,9 +1,5 @@ -DIST libaec-0.3.2.tar.gz 353185 BLAKE2B 7578b35f25ecf8e3e5172f1f0fcbb84a0354cf5a1cb3bfb8588d63ee6872ea8ad7e220b53ea4989dfc1741417f5f10023e91d3a3db7d2ed9e7bc1f6a4eae3509 SHA512 c3935f7d3e2e289e66f24d5af8f8fe21aab1044adbe883708ed64eb194bf93511fe2a9dd2b1658571ebbcc502123b3a5e6dfaa1bc4a1b85eaeaedc8b43d8085e -DIST libaec-1.0.0.tar.gz 3118578 BLAKE2B f3b8ef52e636cd3a04710f75de6fac6d4ab97bbb9422a7753ec5acf98a9cfedf8dacfd13a610f6a5445312448e3490d43182753c8f82995b112de1ad3dd0f45a SHA512 112ded6151e46a90adfe230d8298452b2e42105e0e9d40ce10ac49f1e0160a13fa7ddec22e22346f0d5defc397bbba7c12f9d58b08e024da19991108e6e8d8ba -DIST libaec-1.0.1.tar.gz 769507 BLAKE2B 7a5f0e3c016f6562a94013a072e33638ba6e4b4af1a607befd508e442dae750d59435b96628bc59e4b86694d5745c302a615fa00603221d642700b86519c4428 SHA512 e3e38298d8d1fdf86332612c4dd62cafb8fa59ec8de00ed96aabee5bfbb46fd2396fcc0ad7fa2e4f89f9a22de538e58be5017d214b42176c0450dcc7c35bfedb DIST libaec-1.0.2.tar.gz 767910 BLAKE2B 4d843839b21d93a7ae0f90627217978d1d7262dff35962bb7fe7a9f62f57b5042c36278ff61ad7d7aa3ad1a7cdd1ceb75a59dcc1ab9b3d1c899c506ffe5819d3 SHA512 28a8839089e4b643b259cb8679b96e602a35098d1129baae6b3923767060e5deabfa33256d628a8bcbf205368cda5f2e6701078de0caccf44e0597d932a67ba2 -EBUILD libaec-0.3.2.ebuild 866 BLAKE2B c76546c4c162be29bc2073d22b0d191a3b64fe2354fc24425e293f2da91652a5e4dba8ab7ea2d6c95884054de4a5f6da018cc442cdd320190b8309caa60f0995 SHA512 c1cbba499700a549b299ee9cba35d3e8e2014ddf1c943eb3f7a6954ecfb0ead97b730796c31590aa27793bfa1e78679fde81d9fd5411a4771eeb84de072f86f3 -EBUILD libaec-1.0.0.ebuild 898 BLAKE2B 947c0edd44b0b1bf17307db40e507b4133a1fb2e837541f28aec7af6cf482ab76d43b12cc8ce215ee983028e1f9a5bd1c7dff24e975ceb21bcf6d63a4e7291dc SHA512 4c5d847fc9c9c22c7b19a65175b878030ca8c0916caebc8223330cb712709df7bdadce824bfda6f44cac6d5b89b50c107da948089a1055519a3572cde4cb30e5 -EBUILD libaec-1.0.1.ebuild 750 BLAKE2B 94023b81dfa7ebe237dfc857b71b835540ad8a6209ab36808db00cb917a8736ca4abd8170eba20517a2f5e9cdd225b8dcb397e043f5d831ec16c445c8915aa48 SHA512 7e506fb0f84d3e18c86cf0bbe1bf657911393c18316398c6bb9fd2787de0ac0142e421241b503148f739944e406eb3a049af3622b993f0d662a0816bcdb5dcf7 +DIST libaec-1.0.4.tar.gz 2775768 BLAKE2B e083c5e268296227b5193c2192f7c52d47f8cef08823de013453ffd2c5f8c115921a79c60286e7582cbfcbb914c5e8ad4c2493e4ec89395df3be2206bc893591 SHA512 74d01208ad3a426d68895dbfa8a830c96618a219f27745ecfd94b248462748e772c266e7fb0d4e4f4c75f8953a97f835fb2ece67317cf9e9a7495360362d22eb EBUILD libaec-1.0.2.ebuild 739 BLAKE2B 57c3fb5b3d94e17960c94ce135226386b16d5fbb481fcafe730e8b8ac836d8f8e9efe1de535dbdfaec57fe8fe8b0748d4a3604b626c4d319ebc4a23ac0c172f4 SHA512 eef3ad4f0b72a5fb168b5cd887dcf27cefa93f46e818ab3efc7198187948baec4f10fcbb61f5c49def4d6d15b816486bb022cca54a5401dcc706faf348088f7b +EBUILD libaec-1.0.4.ebuild 746 BLAKE2B 560dbff99896a9c23906eeb2c8b6cd7ad52ae182d99dd1c92194501c29ea1e62287fdbc78e5ee3aeaa46e10eebb0f272f61b3cfc087129faeb1d2afc16a0bd44 SHA512 046695832d8ce2400d6bbc13648061783182a8e0f88b7f6cd22f7df1210cfb835ceb135384ec8ac771a8cba02ae9dc075ad217a9b6c4e5084bae4be32ef92afc MISC metadata.xml 719 BLAKE2B d8294233ada6c2318c05d70c6062e7b7db0b0bab38410e9bd0c7d6f9834d1515cb138095d555f27f36c829fbbf7c83c141c1ce74213fba849da8704adf63889d SHA512 f0197c0cf374cb0771e4b2e3bfcc80f639d3e660943df1cab79eec68b515a605855f792b0b1627d24409cfb6cc2890ca7e96f4aace01639106ee50e14574ccf6 diff --git a/sci-libs/libaec/libaec-0.3.2.ebuild b/sci-libs/libaec/libaec-0.3.2.ebuild deleted file mode 100644 index a242649f4d19..000000000000 --- a/sci-libs/libaec/libaec-0.3.2.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils ltprune -# number that might change every version -PID=453 - -DESCRIPTION="Adaptive Entropy Coding library" -HOMEPAGE="https://www.dkrz.de/redmine/projects/aec" -SRC_URI="https://www.dkrz.de/redmine/attachments/download/${PID}/${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0/2" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="static-libs +szip" - -DEPEND="" -RDEPEND="szip? ( !sci-libs/szip )" - -src_configure() { - econf $(use_enable static-libs static) -} - -src_install() { - default - # avoid conflict with szip (easier than to patch autotools) - if ! use szip; then - rm "${ED}"/usr/include/szlib.h || die - rm "${ED}"/usr/$(get_libdir)/libsz* || die - rm "${ED}"/usr/share/doc/${PF}/README.SZIP || die - fi - use static-libs || prune_libtool_files --all -} diff --git a/sci-libs/libaec/libaec-1.0.0.ebuild b/sci-libs/libaec/libaec-1.0.0.ebuild deleted file mode 100644 index 12418e922659..000000000000 --- a/sci-libs/libaec/libaec-1.0.0.ebuild +++ /dev/null @@ -1,35 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils ltprune -# number that might change every version -PID="631e85bcf877c2dcaca9b2e6d6526339" - -DESCRIPTION="Adaptive Entropy Coding library" -HOMEPAGE="https://gitlab.dkrz.de/k202009/libaec" -SRC_URI="https://gitlab.dkrz.de/k202009/libaec/uploads/${PID}/${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0/2" -KEYWORDS="~amd64 ~arm64 ~x86 ~amd64-linux ~x86-linux" -IUSE="static-libs +szip" - -DEPEND="" -RDEPEND="szip? ( !sci-libs/szip )" - -src_configure() { - econf $(use_enable static-libs static) -} - -src_install() { - default - # avoid conflict with szip (easier than to patch autotools) - if ! use szip; then - rm "${ED}"/usr/include/szlib.h || die - rm "${ED}"/usr/$(get_libdir)/libsz* || die - rm "${ED}"/usr/share/doc/${PF}/README.SZIP || die - fi - use static-libs || prune_libtool_files --all -} diff --git a/sci-libs/libaec/libaec-1.0.1.ebuild b/sci-libs/libaec/libaec-1.0.1.ebuild deleted file mode 100644 index 09a38b3d5844..000000000000 --- a/sci-libs/libaec/libaec-1.0.1.ebuild +++ /dev/null @@ -1,28 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils vcs-snapshot - -DESCRIPTION="Adaptive Entropy Coding library" -HOMEPAGE="https://gitlab.dkrz.de/k202009/libaec" -SRC_URI="https://gitlab.dkrz.de/k202009/libaec/repository/archive.tar.gz?ref=v${PV} -> ${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0/2" -KEYWORDS="~amd64 ~arm64 ~x86 ~amd64-linux ~x86-linux" -IUSE="+szip" - -DEPEND="" -RDEPEND="szip? ( !sci-libs/szip )" - -src_install() { - cmake-utils_src_install - # avoid conflict with szip (easier than to patch autotools) - if ! use szip; then - rm "${ED}"/usr/include/szlib.h || die - rm "${ED}"/usr/$(get_libdir)/libsz* || die - rm "${ED}"/usr/share/doc/${PF}/README.SZIP || die - fi -} diff --git a/sci-libs/libaec/libaec-1.0.4.ebuild b/sci-libs/libaec/libaec-1.0.4.ebuild new file mode 100644 index 000000000000..c88b8785e98c --- /dev/null +++ b/sci-libs/libaec/libaec-1.0.4.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit cmake + +MY_P="${PN}-v${PV}" +DESCRIPTION="Adaptive Entropy Coding library" +HOMEPAGE="https://gitlab.dkrz.de/k202009/libaec" +SRC_URI="https://gitlab.dkrz.de/k202009/libaec/-/archive/v${PV}/${MY_P}.tar.gz -> ${P}.tar.gz" +S="${WORKDIR}/${MY_P}" + +LICENSE="BSD-2" +SLOT="0/2" +KEYWORDS="amd64 ~arm arm64 x86 ~amd64-linux ~x86-linux" +IUSE="+szip" + +RDEPEND="szip? ( !sci-libs/szip )" + +src_install() { + cmake_src_install + + # avoid conflict with szip (easier than to patch) + if ! use szip; then + rm "${ED}"/usr/include/szlib.h || die + rm "${ED}"/usr/$(get_libdir)/libsz* || die + rm "${ED}"/usr/share/doc/${PF}/README.SZIP || die + fi +} diff --git a/sci-libs/libecpint/Manifest b/sci-libs/libecpint/Manifest new file mode 100644 index 000000000000..289b2fc57399 --- /dev/null +++ b/sci-libs/libecpint/Manifest @@ -0,0 +1,3 @@ +DIST libecpint-1.0.2.tar.gz 1161801 BLAKE2B 98b9264055bc9dab86ad54921f65380bca6cf96a2e6000bc061998367b3eeaffe122fa03ed83c75deb568ee7cce49ff85b97909bd57ae057a189025421dee82e SHA512 adf9394628a39d1e07e4f02bf4fad1c3d19cbfd9a9aa123d6151dddb78c7ef2c2cab07bc7060dba1d5114756c03964c2bd237c82203a1efb38b9facaaa24c74a +EBUILD libecpint-1.0.2.ebuild 614 BLAKE2B cfa9e63c58e931e386cd1fa89252621ae2056ec93a10e8b1dd0ca3c87c14a0973c69707844f26710cf90b5561b858d9ee87abbeb0c6cceee780ec787cb004978 SHA512 aef1b9a6f9ed45d329af61014925b8fc17336bdb12a66b283100856eab619cf4005a2b0974f021452c1f1c59c484d2076439138c1865a1a535f027ed3276b16d +MISC metadata.xml 636 BLAKE2B 4ef2fae4bda3d954677ec576703eb777c947212819c38ef1181c50f4bd7e128c342547d4c35e61ecac57852f21108265410034e2a71f546b8101a587e9428840 SHA512 c74b750861f6bd26d0f6aef880d055cc418216e4e8a17b45bfe51caee453ff0214fe7557b59b38f71dfcf13063ebf0c93ed4c29efdbeb5528172abf087d7e60c diff --git a/sci-libs/libecpint/libecpint-1.0.2.ebuild b/sci-libs/libecpint/libecpint-1.0.2.ebuild new file mode 100644 index 000000000000..40c0946f2990 --- /dev/null +++ b/sci-libs/libecpint/libecpint-1.0.2.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit cmake + +DESCRIPTION="Efficient evaluation of integrals over ab initio effective core potentials" +HOMEPAGE="https://github.com/robashaw/libecpint" +SRC_URI="https://github.com/robashaw/libecpint/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +SLOT="0" +LICENSE="MIT" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="test" +RESTRICT="!test? ( test )" + +DEPEND=" + dev-libs/pugixml + test? ( dev-cpp/gtest )" + +src_configure() { + mycmakeargs=( + -DLIBECPINT_BUILD_TESTS=$(usex test) + ) + cmake_src_configure +} diff --git a/sci-libs/libecpint/metadata.xml b/sci-libs/libecpint/metadata.xml new file mode 100644 index 000000000000..0802ee79be89 --- /dev/null +++ b/sci-libs/libecpint/metadata.xml @@ -0,0 +1,17 @@ + + + + + sci@gentoo.org + Gentoo Science Project + + + Libecpint is a C++ library for the efficient evaluation of integrals over ab + initio effective core potentials, using a mixture of generated, recursive + code and Gauss-Chebyshev quadrature. It is designed to be standalone and + generic. + + + robashaw/libecpint + + diff --git a/sci-libs/libgeodecomp/Manifest b/sci-libs/libgeodecomp/Manifest index 7e3f04987287..9098e3462e23 100644 --- a/sci-libs/libgeodecomp/Manifest +++ b/sci-libs/libgeodecomp/Manifest @@ -1,4 +1,4 @@ -AUX libgeodecomp-0.5.0_pre20200420-mpi.patch 13752 BLAKE2B ed5e2cafc0c8777e30ecf7e3b896aab1226b110c948e984dabf15d0bb85fa931f6991e1c108e55bab4016131c6f142d589500004e4ac76cb840c41eb975f41ea SHA512 b33ddbe1e0293e14b9f6b2a982cf8717d5c6dbceb34c476a5896c2eb3776ecbac9e219f11b9aea6a10a108b1fae3a2b373976e7636ff80b0f381b6bd4e1b0722 -DIST libgeodecomp-0.5.0_pre20200420.tar.gz 1507078 BLAKE2B 64d5c9a138c54175ce049a1a02def90553bca617b22c9ac5fa93cd66aebfd7892f5a458f2d3eb3dd987d3c897cbb338b64cb64af7447f6ae74b41d02a762888e SHA512 0e1caa011641fba5af3c32f165fc95ced578ebeb45cb7ef56f1ede416f2e6aef532569a85339e48b43b0050bbfb60ffa1760604577c07137590445a87e691c70 -EBUILD libgeodecomp-0.5.0_pre20200420.ebuild 1673 BLAKE2B c83553fc11313cad76f3b726cbdfc0326a5c545665d448553302b8309a228ad483c0a924d84322fff514f27e0097e3df3e9ca4f56ba7a371487d647b5bbf6099 SHA512 9046846474befbd1aaa2d8351295d222fed3e1901912e9b683c0236a38f2fcb894b35154d1dec86499b3083baa2d04351261cde288eafe55ed0ca4eb3d51adb7 +AUX libgeodecomp-0.5.0_pre20201009-mpi.patch 13752 BLAKE2B ed5e2cafc0c8777e30ecf7e3b896aab1226b110c948e984dabf15d0bb85fa931f6991e1c108e55bab4016131c6f142d589500004e4ac76cb840c41eb975f41ea SHA512 b33ddbe1e0293e14b9f6b2a982cf8717d5c6dbceb34c476a5896c2eb3776ecbac9e219f11b9aea6a10a108b1fae3a2b373976e7636ff80b0f381b6bd4e1b0722 +DIST libgeodecomp-0.5.0_pre20201009.tar.gz 1510212 BLAKE2B fdddf8ef8dd93d0a4860dbde27d1e59bda039b27ff7526a1ddfb6cfe8103f54edd2a847dad2ffa1cdc0c4454b2d48e0df7e5f941ad2a9df9c848868817413b03 SHA512 42a28fcce6408c610265f8cde9c9d46e83519a8ec4a3e6b1f0e6637597b4b9a702c43655f9c1cf5a159012533f2c2e937de21bda2aed54cdd6acd19ec5b4030a +EBUILD libgeodecomp-0.5.0_pre20201009.ebuild 1673 BLAKE2B b00edfd28376b55f0c5772d6bff2994ea151bd2e29822594059678e262b324925fdd14e4f4e5fa415ed26e08267ef1ac926e942c0dedeab20e142527fdedc178 SHA512 6c9b30a02ad8cf246b0c5fb26c113671875426213320f6f80b33b92a99ad0a8ae7e7930c436fdf4e1af8de9cb0d0787bc9f2b1ee290400862a6a2fab8a76e315 MISC metadata.xml 1345 BLAKE2B d6cb11021ade1a8c9007bf7a57c1e9355e19331498b66f746405bbd52dd5562656e827ab1db290190c37b283f579512609cf730d0ea27f6c31629d7e1fc38266 SHA512 f377ab4249dc9bb3dc2518e7d86ad6c2b44cd1249474480a5a71aa5b944c220ddc1608a8171d1abeaffa3d4628f4f327956cfb412ac14336f75705b7d8fe0fd9 diff --git a/sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20200420-mpi.patch b/sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20200420-mpi.patch deleted file mode 100644 index 1a1164e342be..000000000000 --- a/sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20200420-mpi.patch +++ /dev/null @@ -1,292 +0,0 @@ -From 55356ab9c03cd25efeb5176761f2f5b3744b4371 Mon Sep 17 00:00:00 2001 -From: Kurt Kanzenbach -Date: Fri, 24 Jan 2020 17:59:48 +0100 -Subject: [PATCH] cmake: Disable mpiruns - -The mpiruns will violate the sandboxing. Therefore, disable them including -scotch. - -Signed-off-by: Kurt Kanzenbach ---- - CMakeLists.txt | 14 +- - CMakeModules/FindSCOTCH.cmake | 238 +++++++++++++++++----------------- - 2 files changed, 121 insertions(+), 131 deletions(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index ed5cc607c3ed..fec488002958 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -238,19 +238,9 @@ if (MACHINE_ARCH MATCHES "x86_64") - set(AMD64_LINUX true) - endif() - --# test if mpirun/mpiexec supports the --oversubscribe flag: -+# use the --oversubscribe flag: - if(MPI_FOUND) -- execute_process( -- COMMAND ${MPIEXEC} --oversubscribe ${MPIEXEC_NUMPROC_FLAG} 4 echo ok -- RESULT_VARIABLE MPIEXEC_OVERSUBSCRIBE_RETURN_CODE -- OUTPUT_QUIET -- ERROR_QUIET) -- -- if (MPIEXEC_OVERSUBSCRIBE_RETURN_CODE EQUAL 0) -- set(MPIEXEC_OVERSUBSCRIBE_FLAG "--oversubscribe") -- else() -- set(MPIEXEC_OVERSUBSCRIBE_FLAG "") -- endif() -+ set(MPIEXEC_OVERSUBSCRIBE_FLAG "--oversubscribe") - endif() - - #============= 3. CONFIGURABLE BUILD OPTIONS ========================= -diff --git a/CMakeModules/FindSCOTCH.cmake b/CMakeModules/FindSCOTCH.cmake -index 5c717977dbba..146c2bf8bb60 100644 ---- a/CMakeModules/FindSCOTCH.cmake -+++ b/CMakeModules/FindSCOTCH.cmake -@@ -233,125 +233,125 @@ int main() { - ") - - message(STATUS "Performing test SCOTCH_TEST_RUNS") -- try_run( -- SCOTCH_TEST_LIB_EXITCODE -- SCOTCH_TEST_LIB_COMPILED -- ${CMAKE_CURRENT_BINARY_DIR} -- ${SCOTCH_TEST_LIB_CPP} -- CMAKE_FLAGS -- "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" -- "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" -- COMPILE_OUTPUT_VARIABLE SCOTCH_TEST_LIB_COMPILE_OUTPUT -- RUN_OUTPUT_VARIABLE SCOTCH_TEST_LIB_OUTPUT -- ) -- -- if (SCOTCH_TEST_LIB_COMPILED AND SCOTCH_TEST_LIB_EXITCODE EQUAL 0) -- message(STATUS "Performing test SCOTCH_TEST_RUNS - Success") -- set(SCOTCH_TEST_RUNS TRUE) -- else() -- message(STATUS "Performing test SCOTCH_TEST_RUNS - Failed") -- if (SCOTCH_DEBUG) -- # Output some variables -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_TEST_LIB_COMPILED = ${SCOTCH_TEST_LIB_COMPILED}") -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_TEST_LIB_COMPILE_OUTPUT}") -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") -- endif() -- endif() -- -- # If program does not run, try adding zlib library and test again -- if(NOT SCOTCH_TEST_RUNS) -- if (NOT ZLIB_FOUND) -- find_package(ZLIB) -- endif() -- -- if (ZLIB_INCLUDE_DIRS AND ZLIB_LIBRARIES) -- set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${ZLIB_INCLUDE_DIRS}) -- set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${ZLIB_LIBRARIES}) -- -- message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS") -- try_run( -- SCOTCH_ZLIB_TEST_LIB_EXITCODE -- SCOTCH_ZLIB_TEST_LIB_COMPILED -- ${CMAKE_CURRENT_BINARY_DIR} -- ${SCOTCH_TEST_LIB_CPP} -- CMAKE_FLAGS -- "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" -- "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" -- COMPILE_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT -- RUN_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_OUTPUT -- ) -- -- # Add zlib flags if required and set test run to 'true' -- if (SCOTCH_ZLIB_TEST_LIB_COMPILED AND SCOTCH_ZLIB_TEST_LIB_EXITCODE EQUAL 0) -- message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Success") -- set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${ZLIB_INCLUDE_DIRS}) -- set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${ZLIB_LIBRARIES}) -- set(SCOTCH_TEST_RUNS TRUE) -- else() -- message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Failed") -- if (SCOTCH_DEBUG) -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_ZLIB_TEST_LIB_COMPILED = ${SCOTCH_ZLIB_TEST_LIB_COMPILED}") -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT}") -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") -- endif() -- endif() -- -- endif() -- endif() -- -- if(NOT SCOTCH_TEST_RUNS) -- if (NOT BZIP2_FOUND) -- find_package(BZip2) -- endif() -- -- if (BZIP2_INCLUDE_DIR AND BZIP2_LIBRARIES) -- set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${BZIP2_INCLUDE_DIR}) -- set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${BZIP2_LIBRARIES}) -- -- message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS") -- try_run( -- SCOTCH_BZIP2_TEST_LIB_EXITCODE -- SCOTCH_BZIP2_TEST_LIB_COMPILED -- ${CMAKE_CURRENT_BINARY_DIR} -- ${SCOTCH_TEST_LIB_CPP} -- CMAKE_FLAGS -- "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" -- "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" -- COMPILE_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT -- RUN_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_OUTPUT -- ) -- -- # Add zlib flags if required and set test run to 'true' -- if (SCOTCH_BZIP2_TEST_LIB_COMPILED AND SCOTCH_BZIP2_TEST_LIB_EXITCODE EQUAL 0) -- message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Success") -- set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${BZIP2_INCLUDE_DIR}) -- set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${BZIP2_LIBRARIES}) -- set(SCOTCH_TEST_RUNS TRUE) -- else() -- message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Failed") -- if (SCOTCH_DEBUG) -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_BZIP2_TEST_LIB_COMPILED = ${SCOTCH_BZIP2_TEST_LIB_COMPILED}") -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT}") -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") -- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -- "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") -- endif() -- endif() -- endif() -- endif() -+ # try_run( -+ # SCOTCH_TEST_LIB_EXITCODE -+ # SCOTCH_TEST_LIB_COMPILED -+ # ${CMAKE_CURRENT_BINARY_DIR} -+ # ${SCOTCH_TEST_LIB_CPP} -+ # CMAKE_FLAGS -+ # "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" -+ # "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" -+ # COMPILE_OUTPUT_VARIABLE SCOTCH_TEST_LIB_COMPILE_OUTPUT -+ # RUN_OUTPUT_VARIABLE SCOTCH_TEST_LIB_OUTPUT -+ # ) -+ -+ # if (SCOTCH_TEST_LIB_COMPILED AND SCOTCH_TEST_LIB_EXITCODE EQUAL 0) -+ # message(STATUS "Performing test SCOTCH_TEST_RUNS - Success") -+ # set(SCOTCH_TEST_RUNS TRUE) -+ # else() -+ # message(STATUS "Performing test SCOTCH_TEST_RUNS - Failed") -+ # if (SCOTCH_DEBUG) -+ # # Output some variables -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_TEST_LIB_COMPILED = ${SCOTCH_TEST_LIB_COMPILED}") -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_TEST_LIB_COMPILE_OUTPUT}") -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") -+ # endif() -+ # endif() -+ -+ # # If program does not run, try adding zlib library and test again -+ # if(NOT SCOTCH_TEST_RUNS) -+ # if (NOT ZLIB_FOUND) -+ # find_package(ZLIB) -+ # endif() -+ -+ # if (ZLIB_INCLUDE_DIRS AND ZLIB_LIBRARIES) -+ # set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${ZLIB_INCLUDE_DIRS}) -+ # set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${ZLIB_LIBRARIES}) -+ -+ # message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS") -+ # try_run( -+ # SCOTCH_ZLIB_TEST_LIB_EXITCODE -+ # SCOTCH_ZLIB_TEST_LIB_COMPILED -+ # ${CMAKE_CURRENT_BINARY_DIR} -+ # ${SCOTCH_TEST_LIB_CPP} -+ # CMAKE_FLAGS -+ # "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" -+ # "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" -+ # COMPILE_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT -+ # RUN_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_OUTPUT -+ # ) -+ -+ # # Add zlib flags if required and set test run to 'true' -+ # if (SCOTCH_ZLIB_TEST_LIB_COMPILED AND SCOTCH_ZLIB_TEST_LIB_EXITCODE EQUAL 0) -+ # message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Success") -+ # set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${ZLIB_INCLUDE_DIRS}) -+ # set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${ZLIB_LIBRARIES}) -+ # set(SCOTCH_TEST_RUNS TRUE) -+ # else() -+ # message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Failed") -+ # if (SCOTCH_DEBUG) -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_ZLIB_TEST_LIB_COMPILED = ${SCOTCH_ZLIB_TEST_LIB_COMPILED}") -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT}") -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") -+ # endif() -+ # endif() -+ -+ # endif() -+ # endif() -+ -+ # if(NOT SCOTCH_TEST_RUNS) -+ # if (NOT BZIP2_FOUND) -+ # find_package(BZip2) -+ # endif() -+ -+ # if (BZIP2_INCLUDE_DIR AND BZIP2_LIBRARIES) -+ # set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${BZIP2_INCLUDE_DIR}) -+ # set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${BZIP2_LIBRARIES}) -+ -+ # message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS") -+ # try_run( -+ # SCOTCH_BZIP2_TEST_LIB_EXITCODE -+ # SCOTCH_BZIP2_TEST_LIB_COMPILED -+ # ${CMAKE_CURRENT_BINARY_DIR} -+ # ${SCOTCH_TEST_LIB_CPP} -+ # CMAKE_FLAGS -+ # "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" -+ # "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" -+ # COMPILE_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT -+ # RUN_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_OUTPUT -+ # ) -+ -+ # # Add zlib flags if required and set test run to 'true' -+ # if (SCOTCH_BZIP2_TEST_LIB_COMPILED AND SCOTCH_BZIP2_TEST_LIB_EXITCODE EQUAL 0) -+ # message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Success") -+ # set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${BZIP2_INCLUDE_DIR}) -+ # set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${BZIP2_LIBRARIES}) -+ # set(SCOTCH_TEST_RUNS TRUE) -+ # else() -+ # message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Failed") -+ # if (SCOTCH_DEBUG) -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_BZIP2_TEST_LIB_COMPILED = ${SCOTCH_BZIP2_TEST_LIB_COMPILED}") -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT}") -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") -+ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " -+ # "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") -+ # endif() -+ # endif() -+ # endif() -+ # endif() - - endif() - endif() --- -2.24.1 - diff --git a/sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20201009-mpi.patch b/sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20201009-mpi.patch new file mode 100644 index 000000000000..1a1164e342be --- /dev/null +++ b/sci-libs/libgeodecomp/files/libgeodecomp-0.5.0_pre20201009-mpi.patch @@ -0,0 +1,292 @@ +From 55356ab9c03cd25efeb5176761f2f5b3744b4371 Mon Sep 17 00:00:00 2001 +From: Kurt Kanzenbach +Date: Fri, 24 Jan 2020 17:59:48 +0100 +Subject: [PATCH] cmake: Disable mpiruns + +The mpiruns will violate the sandboxing. Therefore, disable them including +scotch. + +Signed-off-by: Kurt Kanzenbach +--- + CMakeLists.txt | 14 +- + CMakeModules/FindSCOTCH.cmake | 238 +++++++++++++++++----------------- + 2 files changed, 121 insertions(+), 131 deletions(-) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index ed5cc607c3ed..fec488002958 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -238,19 +238,9 @@ if (MACHINE_ARCH MATCHES "x86_64") + set(AMD64_LINUX true) + endif() + +-# test if mpirun/mpiexec supports the --oversubscribe flag: ++# use the --oversubscribe flag: + if(MPI_FOUND) +- execute_process( +- COMMAND ${MPIEXEC} --oversubscribe ${MPIEXEC_NUMPROC_FLAG} 4 echo ok +- RESULT_VARIABLE MPIEXEC_OVERSUBSCRIBE_RETURN_CODE +- OUTPUT_QUIET +- ERROR_QUIET) +- +- if (MPIEXEC_OVERSUBSCRIBE_RETURN_CODE EQUAL 0) +- set(MPIEXEC_OVERSUBSCRIBE_FLAG "--oversubscribe") +- else() +- set(MPIEXEC_OVERSUBSCRIBE_FLAG "") +- endif() ++ set(MPIEXEC_OVERSUBSCRIBE_FLAG "--oversubscribe") + endif() + + #============= 3. CONFIGURABLE BUILD OPTIONS ========================= +diff --git a/CMakeModules/FindSCOTCH.cmake b/CMakeModules/FindSCOTCH.cmake +index 5c717977dbba..146c2bf8bb60 100644 +--- a/CMakeModules/FindSCOTCH.cmake ++++ b/CMakeModules/FindSCOTCH.cmake +@@ -233,125 +233,125 @@ int main() { + ") + + message(STATUS "Performing test SCOTCH_TEST_RUNS") +- try_run( +- SCOTCH_TEST_LIB_EXITCODE +- SCOTCH_TEST_LIB_COMPILED +- ${CMAKE_CURRENT_BINARY_DIR} +- ${SCOTCH_TEST_LIB_CPP} +- CMAKE_FLAGS +- "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" +- "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" +- COMPILE_OUTPUT_VARIABLE SCOTCH_TEST_LIB_COMPILE_OUTPUT +- RUN_OUTPUT_VARIABLE SCOTCH_TEST_LIB_OUTPUT +- ) +- +- if (SCOTCH_TEST_LIB_COMPILED AND SCOTCH_TEST_LIB_EXITCODE EQUAL 0) +- message(STATUS "Performing test SCOTCH_TEST_RUNS - Success") +- set(SCOTCH_TEST_RUNS TRUE) +- else() +- message(STATUS "Performing test SCOTCH_TEST_RUNS - Failed") +- if (SCOTCH_DEBUG) +- # Output some variables +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_COMPILED = ${SCOTCH_TEST_LIB_COMPILED}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_TEST_LIB_COMPILE_OUTPUT}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") +- endif() +- endif() +- +- # If program does not run, try adding zlib library and test again +- if(NOT SCOTCH_TEST_RUNS) +- if (NOT ZLIB_FOUND) +- find_package(ZLIB) +- endif() +- +- if (ZLIB_INCLUDE_DIRS AND ZLIB_LIBRARIES) +- set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${ZLIB_INCLUDE_DIRS}) +- set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${ZLIB_LIBRARIES}) +- +- message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS") +- try_run( +- SCOTCH_ZLIB_TEST_LIB_EXITCODE +- SCOTCH_ZLIB_TEST_LIB_COMPILED +- ${CMAKE_CURRENT_BINARY_DIR} +- ${SCOTCH_TEST_LIB_CPP} +- CMAKE_FLAGS +- "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" +- "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" +- COMPILE_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT +- RUN_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_OUTPUT +- ) +- +- # Add zlib flags if required and set test run to 'true' +- if (SCOTCH_ZLIB_TEST_LIB_COMPILED AND SCOTCH_ZLIB_TEST_LIB_EXITCODE EQUAL 0) +- message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Success") +- set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${ZLIB_INCLUDE_DIRS}) +- set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${ZLIB_LIBRARIES}) +- set(SCOTCH_TEST_RUNS TRUE) +- else() +- message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Failed") +- if (SCOTCH_DEBUG) +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_ZLIB_TEST_LIB_COMPILED = ${SCOTCH_ZLIB_TEST_LIB_COMPILED}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") +- endif() +- endif() +- +- endif() +- endif() +- +- if(NOT SCOTCH_TEST_RUNS) +- if (NOT BZIP2_FOUND) +- find_package(BZip2) +- endif() +- +- if (BZIP2_INCLUDE_DIR AND BZIP2_LIBRARIES) +- set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${BZIP2_INCLUDE_DIR}) +- set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${BZIP2_LIBRARIES}) +- +- message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS") +- try_run( +- SCOTCH_BZIP2_TEST_LIB_EXITCODE +- SCOTCH_BZIP2_TEST_LIB_COMPILED +- ${CMAKE_CURRENT_BINARY_DIR} +- ${SCOTCH_TEST_LIB_CPP} +- CMAKE_FLAGS +- "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" +- "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" +- COMPILE_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT +- RUN_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_OUTPUT +- ) +- +- # Add zlib flags if required and set test run to 'true' +- if (SCOTCH_BZIP2_TEST_LIB_COMPILED AND SCOTCH_BZIP2_TEST_LIB_EXITCODE EQUAL 0) +- message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Success") +- set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${BZIP2_INCLUDE_DIR}) +- set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${BZIP2_LIBRARIES}) +- set(SCOTCH_TEST_RUNS TRUE) +- else() +- message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Failed") +- if (SCOTCH_DEBUG) +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_BZIP2_TEST_LIB_COMPILED = ${SCOTCH_BZIP2_TEST_LIB_COMPILED}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") +- message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " +- "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") +- endif() +- endif() +- endif() +- endif() ++ # try_run( ++ # SCOTCH_TEST_LIB_EXITCODE ++ # SCOTCH_TEST_LIB_COMPILED ++ # ${CMAKE_CURRENT_BINARY_DIR} ++ # ${SCOTCH_TEST_LIB_CPP} ++ # CMAKE_FLAGS ++ # "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" ++ # "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" ++ # COMPILE_OUTPUT_VARIABLE SCOTCH_TEST_LIB_COMPILE_OUTPUT ++ # RUN_OUTPUT_VARIABLE SCOTCH_TEST_LIB_OUTPUT ++ # ) ++ ++ # if (SCOTCH_TEST_LIB_COMPILED AND SCOTCH_TEST_LIB_EXITCODE EQUAL 0) ++ # message(STATUS "Performing test SCOTCH_TEST_RUNS - Success") ++ # set(SCOTCH_TEST_RUNS TRUE) ++ # else() ++ # message(STATUS "Performing test SCOTCH_TEST_RUNS - Failed") ++ # if (SCOTCH_DEBUG) ++ # # Output some variables ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_COMPILED = ${SCOTCH_TEST_LIB_COMPILED}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_TEST_LIB_COMPILE_OUTPUT}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") ++ # endif() ++ # endif() ++ ++ # # If program does not run, try adding zlib library and test again ++ # if(NOT SCOTCH_TEST_RUNS) ++ # if (NOT ZLIB_FOUND) ++ # find_package(ZLIB) ++ # endif() ++ ++ # if (ZLIB_INCLUDE_DIRS AND ZLIB_LIBRARIES) ++ # set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${ZLIB_INCLUDE_DIRS}) ++ # set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${ZLIB_LIBRARIES}) ++ ++ # message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS") ++ # try_run( ++ # SCOTCH_ZLIB_TEST_LIB_EXITCODE ++ # SCOTCH_ZLIB_TEST_LIB_COMPILED ++ # ${CMAKE_CURRENT_BINARY_DIR} ++ # ${SCOTCH_TEST_LIB_CPP} ++ # CMAKE_FLAGS ++ # "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" ++ # "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" ++ # COMPILE_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT ++ # RUN_OUTPUT_VARIABLE SCOTCH_ZLIB_TEST_LIB_OUTPUT ++ # ) ++ ++ # # Add zlib flags if required and set test run to 'true' ++ # if (SCOTCH_ZLIB_TEST_LIB_COMPILED AND SCOTCH_ZLIB_TEST_LIB_EXITCODE EQUAL 0) ++ # message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Success") ++ # set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${ZLIB_INCLUDE_DIRS}) ++ # set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${ZLIB_LIBRARIES}) ++ # set(SCOTCH_TEST_RUNS TRUE) ++ # else() ++ # message(STATUS "Performing test SCOTCH_ZLIB_TEST_RUNS - Failed") ++ # if (SCOTCH_DEBUG) ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_ZLIB_TEST_LIB_COMPILED = ${SCOTCH_ZLIB_TEST_LIB_COMPILED}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_ZLIB_TEST_LIB_COMPILE_OUTPUT}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") ++ # endif() ++ # endif() ++ ++ # endif() ++ # endif() ++ ++ # if(NOT SCOTCH_TEST_RUNS) ++ # if (NOT BZIP2_FOUND) ++ # find_package(BZip2) ++ # endif() ++ ++ # if (BZIP2_INCLUDE_DIR AND BZIP2_LIBRARIES) ++ # set(CMAKE_REQUIRED_INCLUDES ${CMAKE_REQUIRED_INCLUDES} ${BZIP2_INCLUDE_DIR}) ++ # set(CMAKE_REQUIRED_LIBRARIES ${CMAKE_REQUIRED_LIBRARIES} ${BZIP2_LIBRARIES}) ++ ++ # message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS") ++ # try_run( ++ # SCOTCH_BZIP2_TEST_LIB_EXITCODE ++ # SCOTCH_BZIP2_TEST_LIB_COMPILED ++ # ${CMAKE_CURRENT_BINARY_DIR} ++ # ${SCOTCH_TEST_LIB_CPP} ++ # CMAKE_FLAGS ++ # "-DINCLUDE_DIRECTORIES:STRING=${CMAKE_REQUIRED_INCLUDES}" ++ # "-DLINK_LIBRARIES:STRING=${CMAKE_REQUIRED_LIBRARIES}" ++ # COMPILE_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT ++ # RUN_OUTPUT_VARIABLE SCOTCH_BZIP2_TEST_LIB_OUTPUT ++ # ) ++ ++ # # Add zlib flags if required and set test run to 'true' ++ # if (SCOTCH_BZIP2_TEST_LIB_COMPILED AND SCOTCH_BZIP2_TEST_LIB_EXITCODE EQUAL 0) ++ # message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Success") ++ # set(SCOTCH_INCLUDE_DIRS ${SCOTCH_INCLUDE_DIRS} ${BZIP2_INCLUDE_DIR}) ++ # set(SCOTCH_LIBRARIES ${SCOTCH_LIBRARIES} ${BZIP2_LIBRARIES}) ++ # set(SCOTCH_TEST_RUNS TRUE) ++ # else() ++ # message(STATUS "Performing test SCOTCH_BZIP2_TEST_RUNS - Failed") ++ # if (SCOTCH_DEBUG) ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_BZIP2_TEST_LIB_COMPILED = ${SCOTCH_BZIP2_TEST_LIB_COMPILED}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT = ${SCOTCH_BZIP2_TEST_LIB_COMPILE_OUTPUT}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_EXITCODE = ${SCOTCH_TEST_LIB_EXITCODE}") ++ # message(STATUS "[ ${CMAKE_CURRENT_LIST_FILE}:${CMAKE_CURRENT_LIST_LINE} ] " ++ # "SCOTCH_TEST_LIB_OUTPUT = ${SCOTCH_TEST_LIB_OUTPUT}") ++ # endif() ++ # endif() ++ # endif() ++ # endif() + + endif() + endif() +-- +2.24.1 + diff --git a/sci-libs/libgeodecomp/libgeodecomp-0.5.0_pre20200420.ebuild b/sci-libs/libgeodecomp/libgeodecomp-0.5.0_pre20200420.ebuild deleted file mode 100644 index d269428d5cd1..000000000000 --- a/sci-libs/libgeodecomp/libgeodecomp-0.5.0_pre20200420.ebuild +++ /dev/null @@ -1,82 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit cmake cuda virtualx - -MY_COMMIT="69c5573ac7b2b654d649e8902fad73b05bf33644" - -DESCRIPTION="An auto-parallelizing library to speed up computer simulations" -HOMEPAGE=" - http://www.libgeodecomp.org - https://github.com/STEllAR-GROUP/libgeodecomp" -SRC_URI="https://github.com/STEllAR-GROUP/libgeodecomp/archive/${MY_COMMIT}.tar.gz -> ${P}.tar.gz" - -SLOT="0" -LICENSE="Boost-1.0" -KEYWORDS="~amd64 ~ppc ~x86" -IUSE="cuda doc hpx mpi opencl opencv qt5 silo" - -BDEPEND=" - doc? ( - app-doc/doxygen - app-text/texlive - media-gfx/graphviz - )" -RDEPEND="dev-libs/boost" -DEPEND="${RDEPEND} - ~dev-libs/libflatarray-0.4.0_pre20200314 - cuda? ( dev-util/nvidia-cuda-toolkit ) - hpx? ( sys-cluster/hpx ) - mpi? ( virtual/mpi ) - opencl? ( virtual/opencl ) - opencv? ( media-libs/opencv ) - qt5? ( - dev-qt/qtcore:5 - dev-qt/qtgui:5 - dev-qt/qtopengl:5 - dev-qt/qtwidgets:5 - ) - silo? ( sci-libs/silo )" - -S="${WORKDIR}/libgeodecomp-${MY_COMMIT}" - -PATCHES=( "${FILESDIR}/${P}-mpi.patch" ) - -DOCS=( README ) - -src_prepare() { - cmake_src_prepare - use cuda && cuda_src_prepare -} - -src_configure() { - local mycmakeargs=( - -DWITH_CUDA=$(usex cuda) - -DWITH_HPX=$(usex hpx) - -DWITH_MPI=$(usex mpi) - -DWITH_OPENCL=$(usex opencl) - -DWITH_OPENCV=$(usex opencv) - -DWITH_QT5=$(usex qt5) - -DWITH_SCOTCH=false - -DWITH_SILO=$(usex silo) - -DWITH_TYPEMAPS=false - -DWITH_VISIT=false - ) - cmake_src_configure -} - -src_compile() { - cmake_src_compile - use doc && cmake_build doc -} - -src_install() { - use doc && local HTML_DOCS=( doc/html/* ) - cmake_src_install -} - -src_test() { - virtx cmake_build check -} diff --git a/sci-libs/libgeodecomp/libgeodecomp-0.5.0_pre20201009.ebuild b/sci-libs/libgeodecomp/libgeodecomp-0.5.0_pre20201009.ebuild new file mode 100644 index 000000000000..70aa22852709 --- /dev/null +++ b/sci-libs/libgeodecomp/libgeodecomp-0.5.0_pre20201009.ebuild @@ -0,0 +1,82 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit cmake cuda virtualx + +MY_COMMIT="6848b3a17b359e03585e56dd1f37dc7c71136114" + +DESCRIPTION="An auto-parallelizing library to speed up computer simulations" +HOMEPAGE=" + http://www.libgeodecomp.org + https://github.com/STEllAR-GROUP/libgeodecomp" +SRC_URI="https://github.com/STEllAR-GROUP/libgeodecomp/archive/${MY_COMMIT}.tar.gz -> ${P}.tar.gz" + +SLOT="0" +LICENSE="Boost-1.0" +KEYWORDS="~amd64 ~ppc ~x86" +IUSE="cuda doc hpx mpi opencl opencv qt5 silo" + +BDEPEND=" + doc? ( + app-doc/doxygen + app-text/texlive + media-gfx/graphviz + )" +RDEPEND="dev-libs/boost" +DEPEND="${RDEPEND} + ~dev-libs/libflatarray-0.4.0_pre20201009 + cuda? ( dev-util/nvidia-cuda-toolkit ) + hpx? ( sys-cluster/hpx ) + mpi? ( virtual/mpi ) + opencl? ( virtual/opencl ) + opencv? ( media-libs/opencv ) + qt5? ( + dev-qt/qtcore:5 + dev-qt/qtgui:5 + dev-qt/qtopengl:5 + dev-qt/qtwidgets:5 + ) + silo? ( sci-libs/silo )" + +S="${WORKDIR}/libgeodecomp-${MY_COMMIT}" + +PATCHES=( "${FILESDIR}/${P}-mpi.patch" ) + +DOCS=( README ) + +src_prepare() { + cmake_src_prepare + use cuda && cuda_src_prepare +} + +src_configure() { + local mycmakeargs=( + -DWITH_CUDA=$(usex cuda) + -DWITH_HPX=$(usex hpx) + -DWITH_MPI=$(usex mpi) + -DWITH_OPENCL=$(usex opencl) + -DWITH_OPENCV=$(usex opencv) + -DWITH_QT5=$(usex qt5) + -DWITH_SCOTCH=false + -DWITH_SILO=$(usex silo) + -DWITH_TYPEMAPS=false + -DWITH_VISIT=false + ) + cmake_src_configure +} + +src_compile() { + cmake_src_compile + use doc && cmake_build doc +} + +src_install() { + use doc && local HTML_DOCS=( doc/html/* ) + cmake_src_install +} + +src_test() { + virtx cmake_build check +} diff --git a/sci-libs/libint/Manifest b/sci-libs/libint/Manifest index d70bf14f8006..9d0c99be91f0 100644 --- a/sci-libs/libint/Manifest +++ b/sci-libs/libint/Manifest @@ -2,5 +2,6 @@ AUX libint-1.1.6-as-needed.patch 2733 BLAKE2B 9ffec6e80030c1226387f51fb3e0409d22 DIST libint-1.1.6.tar.gz 256404 BLAKE2B c754e25f0c3bc6c52eb434beafd2cb794a2e715003ee9409d76e8ae06e0ce19a42a9331ad4db9be2745d6820e7248210d10b4c004146e99192fd16fd2c31966d SHA512 cb39d73e89431c324e32d4a71593fe913c7ae2132677d4600e63ce1ed99e8e431758f0aa3d130991da841e98a1064fa931eb0e82dbe80af4c0ece10ee3a4f2d7 DIST libint-2.6.0.tar.gz 24743255 BLAKE2B 3ab7baba012828485c6c8425bce100e1ab50d2a3c8443ea2ef5cf173d58d8aa211a07e837b10a7f89d7e57f2e15b9384060bbf7b9885f32e9426525e65e15960 SHA512 56343c64b0dfb829702f4bb2fe14a04ad063acd7cb8b5a21cd1a45a830944c1ee98c888c9a28d6746b1bc17459aefcfb0aafe6ef310bfe554056212ad19e43ef EBUILD libint-1.1.6.ebuild 955 BLAKE2B 3b9e1a5074e9d8ff91ad97b7682a0cd658abe256c331c9b270056148aba64fd0e0eb9a0f93388b25d880c9ef017408e768888fe5463900e8264f85e0c843645a SHA512 53f1b0ffc316cb021f05ca6432c24ea8c316bcb87f02149a7a0f8b6401c845d13a5f20b4fa954eee0c25c32b5325bc1f01de8ac183492c9b6f36994c7fddc491 -EBUILD libint-2.6.0.ebuild 1142 BLAKE2B dbcf21cb24b82b024aaf58ccdfc50db19fb942b72cdfca95be9feba3b549ba84749cc6d948afbb0687335c710c4cc0ca275fb65ed0e30d7bdc028cc6e8c18883 SHA512 f48c2a64fcf9bdda80d98d71c750df875ff0b9c031c7407e39985c83b06a151d184d5ce5831786e3b403ece06e2abb206b507f3b506e685cadf50e543c95928c +EBUILD libint-2.6.0-r2.ebuild 1410 BLAKE2B c7711ab08a0479791d75e93906b328d469fcaedbc34f53a9fa6e92f4bfaf0cef9dc84c5f61407ac73ace663cf1d586da8380be268ff3632421f9154d9096b7ed SHA512 d65fc01982c69a7a291f1481e3c2e2aedda5f0401a54949748011288acac9478d68a48027714390072ba34fdc22eb741df69addf3c52431db45f2576ee93c94d +EBUILD libint-2.6.0.ebuild 1141 BLAKE2B a2c257f44c010d68f80b14e32b7f260d0019daa9b30f0bdffd691e51875dcf74b076d8f9d5700aa666588944b210429b9e3598f3494a3b33f23dda30e65279a4 SHA512 96e8d062ac2237fc357a6d93161ac364491c0be9a91da5ca11ef66f65492667658cef1c82d98185b4d93554e91bf11d3c51fbf18be5cf04e4ed2847a0f071b08 MISC metadata.xml 612 BLAKE2B bc2b11edd30d0db99860d1d005c56c428c75be96224fa3285fd3cde6f35af0f142b445254214af00308a29ee8965505a8dfe14ffb2e80b57ca42ef20c91bf100 SHA512 db9172c0e887d45f42914159eae83c0f11b40fbafac31395c782ff959cdccad8a62a8d468cec66d6e362cd8ea09aa3b05057d19fff8a1f94b9bd472be97d04b0 diff --git a/sci-libs/libint/libint-2.6.0-r2.ebuild b/sci-libs/libint/libint-2.6.0-r2.ebuild new file mode 100644 index 000000000000..0297d5bfea81 --- /dev/null +++ b/sci-libs/libint/libint-2.6.0-r2.ebuild @@ -0,0 +1,62 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools eutils fortran-2 toolchain-funcs + +DESCRIPTION="Matrix elements (integrals) evaluation over Cartesian Gaussian functions" +HOMEPAGE="https://github.com/evaleev/libint" +SRC_URI="https://github.com/evaleev/libint/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +SLOT="2" +LICENSE="GPL-2" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="static-libs doc" + +DEPEND=" + dev-libs/boost + dev-libs/gmp[cxx] + doc? ( + dev-texlive/texlive-latex + dev-tex/latex2html + )" + +src_prepare() { + default + eautoreconf +} + +src_configure() { + econf \ + --with-cxx=$(tc-getCXX) \ + --with-cxx-optflags="${CXXFLAGS}" \ + --with-cxxgen-optflags="${CXXFLAGS}" \ + --with-cxxdepend=$(tc-getCXX) \ + --with-ranlib=$(tc-getRANLIB) \ + --with-ar=$(tc-getAR) \ + --with-ld=$(tc-getLD) \ + --enable-eri=2 --enable-eri3=2 --enable-eri2=2 \ + --with-eri-max-am=7,5,4 --with-eri-opt-am=3 \ + --with-eri3-max-am=7 --with-eri2-max-am=7 \ + --with-g12-max-am=5 --with-g12-opt-am=3 \ + --with-g12dkh-max-am=5 --with-g12dkh-opt-am=3 \ + --enable-contracted-ints \ + $(use_enable static-libs static) +} + +src_compile() { + emake LDFLAGS="${LDFLAGS}" + + use doc && emake html pdf +} + +src_install() { + default + + if use doc; then + DOCS=( doc/progman/progman.pdf ) + HTML_DOCS=( doc/progman/progman/*.{html,png,css} ) + einstalldocs + fi +} diff --git a/sci-libs/libint/libint-2.6.0.ebuild b/sci-libs/libint/libint-2.6.0.ebuild index a81caff037d7..774bdc758b4a 100644 --- a/sci-libs/libint/libint-2.6.0.ebuild +++ b/sci-libs/libint/libint-2.6.0.ebuild @@ -11,7 +11,7 @@ SRC_URI="https://github.com/evaleev/libint/archive/v${PV}.tar.gz -> ${P}.tar.gz" SLOT="2" LICENSE="GPL-2" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="static-libs doc" DEPEND=" diff --git a/sci-libs/libsigrok/Manifest b/sci-libs/libsigrok/Manifest index 4b7fe34341e4..9bda25565b22 100644 --- a/sci-libs/libsigrok/Manifest +++ b/sci-libs/libsigrok/Manifest @@ -1,6 +1,8 @@ +AUX libsigrok-0.5.2-check-0.15.patch 917 BLAKE2B 39d042e99dc5a71fa79def033f7a30621967294ed8198b00ca9e7a21caf7ee77f07e3f6d1e27c3a4d2629539835ec1b4e7bc3fdfe2ce1e98d7e97b4a897131ce SHA512 1729653f153ebdec08c0b987a0cf15a50ed6ce8948805b2a9ddf122ba591426e830329bfb47527ef253c19f9b8e98693ab0258e9ac19906473d3605d61c8983d AUX libsigrok-0.5.2-ruby-swig-docs.patch 3085 BLAKE2B 865f38a8230762f58620c06b91dda8bfda405057c6733ef8dc27dbc7094817709ce03a3db1904e4c4ce3ecbdc82da6d16c5719a3f93410a84f07cd4c4018a9ea SHA512 aa3fd492f736c0fe7af1c2ba4e41307731589cef78c480426113dcbae8abbf0ecc07bdc5e1b251103d5aa813f120c5ff7f76dd6d5e577ca8f2b9f29eac008025 AUX libsigrok-0.5.2-swig-4.patch 1484 BLAKE2B 94c9bbde14f3175252677dedd50a7f3ff17bcc734382d93fbe3c65c71989dc72d0568535343bcb7764053075a2bac9c9f2d4e480d582a5371ac0d4a12bcab4a2 SHA512 34e568351624aeada4c3894be8a60cc0111be7c20ebe8e5395a1f81b2fc453a6a8228f575b95faad5140162a9d4fc5fc570546f42673f7275cb3910c73ffc8de DIST libsigrok-0.5.2.tar.gz 1779465 BLAKE2B fc6fdde1054e9ac50bc42249c34b3dbfff1e89d77f0db5a8762e52fcf2ea5ea69b2defcf1cde4ed7b1edd1e21770002ed661a470c8d666904daa48a84a2bbfc5 SHA512 cf673dad6280302d69050c29490621f66c6d6a73932d019a53ec3501316d3f2e23e7667a04f866dbe6ed73f86a63de73d2173e2b6cea563631d705e06f887092 -EBUILD libsigrok-0.5.2.ebuild 3878 BLAKE2B 469ae6df2e16a1d6d26f65631f8ed4c4587533c72f0b9f4c4846f04ecb7c094680aeb62e3ef4412f5dbb34d6d4ccc81e53deb0a21bd1765a9359918e79115dca SHA512 bd48c7fb6f8e6b49e86886153add093039adc1c939ee0dd0666973b0c2caa8417c2a775b88946b3e7915faf1df0f22c9e2ba878c90a2ff687eef7782f815f333 -EBUILD libsigrok-9999.ebuild 3679 BLAKE2B 7c80f57e327ebac43dbda70a5f07147d49db55bc6640f7f22a82709bc0527cc76a8744ca314b79952ee6fc291462b988668d6ca7ad297246932a4f92c720c0dd SHA512 0182a0ba019d158e2c1c66889e8d97c0857f946357fa2704946b024bece3e43d4410b8d147cbd71c82506264f7b3d38f98a165558e3a515522724f1575ff41fb +EBUILD libsigrok-0.5.2-r1.ebuild 3912 BLAKE2B 5cdb953cf07fdad970a080610e0670cf056c1507916a9e9c9e19b880c5d12c4ef495330d43f0024e89388e3580a1373149a5a26a01ca465c9e641ef8b45ec0a1 SHA512 84ff50dd1ba7db844f2472ebd1230fc210f34f9446cabeb10d56267e8f018a3bae0b56870a0789c4017ebceb61577240e8d1ae009cf9fb47d6064a532a178ac1 +EBUILD libsigrok-0.5.2.ebuild 3908 BLAKE2B 568c46ba1494ff09b3fc463b71903b89dd6a90e8369eec74ae552d525c0ac4d12e405b9fbc795babf85f81cc798cae937c4ebea0221d89162801992da3563561 SHA512 e9bfc5c369c5600edaa3ca3f7e769bb1a12f00c0228c551dc91fb7c051193b5c9f419d57d4f3de01c9f77c2d5ba76c48155ab997071b90f42d8f3b7269b32b00 +EBUILD libsigrok-9999.ebuild 3674 BLAKE2B 80c07d9da658ca2ae9237230c20bebd8b1bac782fca990cfa4f530a04b4e9bffeeace9bc202bbfa2ea99c73d15da965101f4481fbd47f26ac09abc1ed99d6664 SHA512 00b450ee4a3090c93cab7799e4e269e62d8da66af57794ca9624536740fc0286c950935bb18954015f645e8b87d6de8842d54e517d3172760544a2a4c12a6582 MISC metadata.xml 701 BLAKE2B 8ae40f35611af8244dd9a0849077c4e823c126ee5d5d20087c6e7b0170b06718da3d4152940b51508586f47493c7c0435a678da278e8570a2e7f0d77ad803fa1 SHA512 66db0a2f5de48ec701c30e5c95562ec8508703fecb30a781d05ab74fc5db1e7ea6ff828b43eb68dda16f56833744a55f3f7c7911d889866b098bdcafe5a62f1b diff --git a/sci-libs/libsigrok/files/libsigrok-0.5.2-check-0.15.patch b/sci-libs/libsigrok/files/libsigrok-0.5.2-check-0.15.patch new file mode 100644 index 000000000000..8099dcc6c49d --- /dev/null +++ b/sci-libs/libsigrok/files/libsigrok-0.5.2-check-0.15.patch @@ -0,0 +1,26 @@ +From 505a55f7899ee2eb41418e753a1290252202ecd3 Mon Sep 17 00:00:00 2001 +From: Jiri Slaby +Date: Tue, 15 Sep 2020 08:50:48 +0200 +Subject: [PATCH] tests: strutil, use ck_assert + +We pass no message, so use ck_assert instead of ck_assert_msg. This +results in an error with check 0.15: +tests/strutil.c:157:2: error: too few arguments to function '_ck_assert_failed' + 157 | ck_assert_msg(saved_locale != NULL); +--- + tests/strutil.c | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/tests/strutil.c b/tests/strutil.c +index fca70eaae..ec2233329 100644 +--- a/tests/strutil.c ++++ b/tests/strutil.c +@@ -154,7 +154,7 @@ START_TEST(test_locale) + fprintf(stderr, "Old locale = %s\n", old_locale); + /* Copy the name so it won’t be clobbered by setlocale. */ + saved_locale = g_strdup(old_locale); +- ck_assert_msg(saved_locale != NULL); ++ ck_assert(saved_locale != NULL); + + #ifdef _WIN32 + /* diff --git a/sci-libs/libsigrok/libsigrok-0.5.2-r1.ebuild b/sci-libs/libsigrok/libsigrok-0.5.2-r1.ebuild new file mode 100644 index 000000000000..9387c14e6ca7 --- /dev/null +++ b/sci-libs/libsigrok/libsigrok-0.5.2-r1.ebuild @@ -0,0 +1,178 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI="7" + +PYTHON_COMPAT=( python3_{6,7,8,9} ) +USE_RUBY="ruby26 ruby25" +RUBY_OPTIONAL="yes" + +inherit python-r1 java-pkg-opt-2 ruby-ng udev xdg-utils + +if [[ ${PV} == *9999* ]]; then + EGIT_REPO_URI="git://sigrok.org/${PN}" + inherit git-r3 autotools +else + SRC_URI="https://sigrok.org/download/source/${PN}/${P}.tar.gz" + KEYWORDS="~amd64 ~x86" +fi + +DESCRIPTION="Basic hardware drivers for logic analyzers and input/output file format support" +HOMEPAGE="https://sigrok.org/wiki/Libsigrok" + +LICENSE="GPL-3" +SLOT="0/4" +IUSE="+cxx ftdi java parport python ruby serial static-libs test +udev usb" +REQUIRED_USE="java? ( cxx ) + python? ( cxx ${PYTHON_REQUIRED_USE} ) + ruby? ( cxx || ( $(ruby_get_use_targets) ) )" + +RESTRICT="!test? ( test )" + +# We also support librevisa, but that isn't in the tree ... +LIB_DEPEND=" + >=dev-libs/glib-2.32.0[static-libs(+)] + >=dev-libs/libzip-0.8:=[static-libs(+)] + cxx? ( dev-cpp/glibmm:2[static-libs(+)] ) + ftdi? ( dev-embedded/libftdi:1[static-libs(+)] ) + parport? ( sys-libs/libieee1284[static-libs(+)] ) + python? ( + ${PYTHON_DEPS} + >=dev-python/pygobject-3.0.0[${PYTHON_USEDEP}] + ) + ruby? ( $(ruby_implementations_depend) ) + serial? ( >=dev-libs/libserialport-0.1.1[static-libs(+)] ) + usb? ( virtual/libusb:1[static-libs(+)] ) +" +RDEPEND=" + java? ( >=virtual/jre-1.4 ) + !static-libs? ( ${LIB_DEPEND//\[static-libs(+)]} ) + static-libs? ( ${LIB_DEPEND} ) +" +DEPEND="${LIB_DEPEND//\[static-libs(+)]} + cxx? ( app-doc/doxygen ) + java? ( + >=dev-lang/swig-3.0.6 + >=virtual/jdk-1.4 + ) + python? ( + >=dev-lang/swig-3.0.6 + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + ) + ruby? ( >=dev-lang/swig-3.0.8 ) + test? ( >=dev-libs/check-0.9.4 ) + virtual/pkgconfig +" + +S="${WORKDIR}"/${P} + +PATCHES=( + # https://sigrok.org/bugzilla/show_bug.cgi?id=1527 + "${FILESDIR}/${P}-swig-4.patch" + # https://sigrok.org/bugzilla/show_bug.cgi?id=1526 + "${FILESDIR}/${P}-ruby-swig-docs.patch" # bug 705074 + "${FILESDIR}/${P}-check-0.15.patch" +) + +pkg_setup() { + use python && python_setup + use ruby && ruby-ng_pkg_setup + java-pkg-opt-2_pkg_setup +} + +src_unpack() { + [[ ${PV} == *9999* ]] && git-r3_src_unpack || default +} + +sigrok_src_prepare() { + [[ ${PV} == *9999* ]] && eautoreconf +} + +each_ruby_prepare() { + sigrok_src_prepare +} + +src_prepare() { + if use ruby; then + cp -rl "${S}" "${WORKDIR}"/all || die + ruby-ng_src_prepare + fi + default + sigrok_src_prepare + use python && python_copy_sources +} + +sigrok_src_configure() { + econf \ + $(use_with ftdi libftdi) \ + $(use_with parport libieee1284) \ + $(use_with serial libserialport) \ + $(use_with usb libusb) \ + $(use_enable cxx) \ + $(use_enable java) \ + $(use_enable static-libs static) \ + "${@}" +} + +each_ruby_configure() { + RUBY="${RUBY}" sigrok_src_configure --enable-ruby --disable-python +} + +each_python_configure() { + cd "${BUILD_DIR}" + sigrok_src_configure --disable-ruby --enable-python +} + +src_configure() { + sigrok_src_configure --disable-ruby --disable-python + use ruby && ruby-ng_src_configure + use python && python_foreach_impl each_python_configure +} + +each_ruby_compile() { + emake ruby-build +} + +each_python_compile() { + cd "${BUILD_DIR}" + emake python-build +} + +src_compile() { + default + use ruby && ruby-ng_src_compile + use python && python_foreach_impl each_python_compile +} + +src_test() { + emake check +} + +each_ruby_install() { + emake ruby-install DESTDIR="${D}" +} + +each_python_install() { + cd "${BUILD_DIR}" + emake python-install DESTDIR="${D}" + python_optimize +} + +src_install() { + default + use python && python_foreach_impl each_python_install + use ruby && ruby-ng_src_install + use udev && udev_dorules contrib/*.rules + find "${D}" -name '*.la' -type f -delete || die +} + +pkg_postinst() { + xdg_icon_cache_update + xdg_mimeinfo_database_update +} + +pkg_postrm() { + xdg_icon_cache_update + xdg_mimeinfo_database_update +} diff --git a/sci-libs/libsigrok/libsigrok-0.5.2.ebuild b/sci-libs/libsigrok/libsigrok-0.5.2.ebuild index 6f9692c6488b..17fe88bad8fc 100644 --- a/sci-libs/libsigrok/libsigrok-0.5.2.ebuild +++ b/sci-libs/libsigrok/libsigrok-0.5.2.ebuild @@ -34,7 +34,7 @@ LIB_DEPEND=" >=dev-libs/glib-2.32.0[static-libs(+)] >=dev-libs/libzip-0.8:=[static-libs(+)] cxx? ( dev-cpp/glibmm:2[static-libs(+)] ) - ftdi? ( >=dev-embedded/libftdi-0.16:=[static-libs(+)] ) + ftdi? ( dev-embedded/libftdi:1[static-libs(+)] ) parport? ( sys-libs/libieee1284[static-libs(+)] ) python? ( ${PYTHON_DEPS} @@ -72,6 +72,7 @@ PATCHES=( "${FILESDIR}/${P}-swig-4.patch" # https://sigrok.org/bugzilla/show_bug.cgi?id=1526 "${FILESDIR}/${P}-ruby-swig-docs.patch" # bug 705074 + "${FILESDIR}/${P}-check-0.15.patch" ) pkg_setup() { diff --git a/sci-libs/libsigrok/libsigrok-9999.ebuild b/sci-libs/libsigrok/libsigrok-9999.ebuild index 1449357471e6..7cbb58b0daf2 100644 --- a/sci-libs/libsigrok/libsigrok-9999.ebuild +++ b/sci-libs/libsigrok/libsigrok-9999.ebuild @@ -1,9 +1,9 @@ # Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI="6" +EAPI="7" -PYTHON_COMPAT=( python3_{6,7,8} ) +PYTHON_COMPAT=( python3_{6,7,8,9} ) USE_RUBY="ruby26 ruby25" RUBY_OPTIONAL="yes" @@ -34,7 +34,7 @@ LIB_DEPEND=" >=dev-libs/glib-2.32.0[static-libs(+)] >=dev-libs/libzip-0.8:=[static-libs(+)] cxx? ( dev-cpp/glibmm:2[static-libs(+)] ) - ftdi? ( >=dev-embedded/libftdi-0.16:=[static-libs(+)] ) + ftdi? ( dev-embedded/libftdi:1[static-libs(+)] ) parport? ( sys-libs/libieee1284[static-libs(+)] ) python? ( ${PYTHON_DEPS} diff --git a/sci-libs/magma/Manifest b/sci-libs/magma/Manifest deleted file mode 100644 index aca2161aee6a..000000000000 --- a/sci-libs/magma/Manifest +++ /dev/null @@ -1,5 +0,0 @@ -DIST magma-1.4.0.tar.gz 3557459 BLAKE2B 610658835e09772f8a54cd851ca23f0123c45133faf7f7db0a9e62c690a0908f6769b7bf16ba955599503416d7ff1b979c7c9b7fa09b57f693a4da709bb483c6 SHA512 9857ac544cc1657ab7d2f6e8c9700facb7fa38278dbfbfeecc3656434de4bd5b96c268f1a98c9ffa823775aa64c315bd63e577b4d475e104311e09d3e5c3ca15 -DIST magma-1.4.1.tar.gz 3765589 BLAKE2B 9f382942e36492efb7a64d62bd62f704e54589aafcdc6d99d33cac1e49612014a139e01766539948f005d86b611c1bb772421635ccd66dd678549a662a410efa SHA512 d283b59b75ca35c8206c07eff97caf28f07ab598955c84a90d795d46905d879d0f1d7e6a2cb080dad74710255b28999e5ce9708e4f0f53a4adba50724fc5ef71 -EBUILD magma-1.4.0.ebuild 3185 BLAKE2B f06d5f99a094a5148d0ded4690b70e94a4970b0e9ba87bbf4c4a9e21ff0b50a8bbc4e49a45c57ec2a793992f0d392aa6146ec3af0b635c2c549312ee9d5a2541 SHA512 4c0124e7e899d3951a0d33cc586830dcd3e5a6a4682e52d5bdaeb096e92c3efc4299e3645b883724e3590f6733861150bfcaa6357651735fa1c725005b71d52f -EBUILD magma-1.4.1.ebuild 3185 BLAKE2B f06d5f99a094a5148d0ded4690b70e94a4970b0e9ba87bbf4c4a9e21ff0b50a8bbc4e49a45c57ec2a793992f0d392aa6146ec3af0b635c2c549312ee9d5a2541 SHA512 4c0124e7e899d3951a0d33cc586830dcd3e5a6a4682e52d5bdaeb096e92c3efc4299e3645b883724e3590f6733861150bfcaa6357651735fa1c725005b71d52f -MISC metadata.xml 712 BLAKE2B 0766b74c5103797646ab6b05d13e03e0ed807c110a3cced8ae099d87bb3c58c161db732cd564e83238f20d0302d86c727b4860818a40f578658997d1ad03c258 SHA512 27a54732753e5a772d40323c4571cbe43b3a9aec5243063e2e37fc9939a0fcf4810e8f91364145ab8982a385bbcdebcb468abbab917a074416fd8818943b5ec0 diff --git a/sci-libs/magma/magma-1.4.0.ebuild b/sci-libs/magma/magma-1.4.0.ebuild deleted file mode 100644 index c50eea5b55ac..000000000000 --- a/sci-libs/magma/magma-1.4.0.ebuild +++ /dev/null @@ -1,124 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -FORTRAN_STANDARD="77 90" - -inherit cuda eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator python-any-r1 - -DESCRIPTION="Matrix Algebra on GPU and Multicore Architectures" -HOMEPAGE="http://icl.cs.utk.edu/magma/" -SRC_URI="http://icl.cs.utk.edu/projectsfiles/${PN}/downloads/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~amd64-linux" -IUSE="fermi kepler static-libs test" - -REQUIRED_USE="?? ( fermi kepler )" - -RDEPEND=" - dev-util/nvidia-cuda-toolkit - virtual/cblas - virtual/lapack" -DEPEND="${RDEPEND} - virtual/pkgconfig - test? ( ${PYTHON_DEPS} )" - -# We have to have write acccess /dev/nvidia0 and /dev/nvidiactl and the portage -# user is (usually) not in the video group -RESTRICT="userpriv !test? ( test )" - -pkg_setup() { - fortran-2_pkg_setup - use test && python-any-r1_pkg_setup -} - -src_prepare() { - # distributed pc file not so useful so replace it - cat <<-EOF > ${PN}.pc - prefix=${EPREFIX}/usr - libdir=\${prefix}/$(get_libdir) - includedir=\${prefix}/include/${PN} - Name: ${PN} - Description: ${DESCRIPTION} - Version: ${PV} - URL: ${HOMEPAGE} - Libs: -L\${libdir} -lmagma - Libs.private: -lm -lpthread -ldl -lcublas -lcudart - Cflags: -I\${includedir} - Requires: cblas lapack - EOF - - if [[ $(tc-getCC) =~ gcc ]]; then - local eopenmp=-fopenmp - elif [[ $(tc-getCC) =~ icc ]]; then - local eopenmp=-openmp - else - elog "Cannot detect compiler type so not setting openmp support" - fi - append-flags -fPIC ${eopenmp} - append-ldflags -Wl,-soname,lib${PN}.so.1.4 ${eopenmp} - - cuda_src_prepare -} - -src_configure() { - cat <<-EOF > make.inc - ARCH = $(tc-getAR) - ARCHFLAGS = cr - RANLIB = $(tc-getRANLIB) - NVCC = nvcc - CC = $(tc-getCXX) - FORT = $(tc-getFC) - INC = -I"${EPREFIX}/opt/cuda/include" -DADD_ -DCUBLAS_GFORTRAN - OPTS = ${CFLAGS} -fPIC - FOPTS = ${FFLAGS} -fPIC -x f95-cpp-input - F77OPTS = ${FFLAGS} -fPIC - NVOPTS = -DADD_ -DUNIX ${NVCCFLAGS} - LDOPTS = ${LDFLAGS} - LOADER = $(tc-getFC) - LIBBLAS = $($(tc-getPKG_CONFIG) --libs cblas) - LIBLAPACK = $($(tc-getPKG_CONFIG) --libs lapack) - CUDADIR = ${EPREFIX}/opt/cuda - LIBCUDA = -L\$(CUDADIR)/$(get_libdir) -lcublas -lcudart - LIB = -pthread -lm -ldl \$(LIBCUDA) \$(LIBBLAS) \$(LIBLAPACK) -lstdc++ - EOF - if use kepler; then - echo >> make.inc "GPU_TARGET = Kepler" - elif use fermi; then - echo >> make.inc "GPU_TARGET = Fermi" - else # See http://icl.cs.utk.edu/magma/forum/viewtopic.php?f=2&t=227 - echo >> make.inc "GPU_TARGET = Tesla" - fi -} - -src_compile() { - emake lib - emake shared - mv lib/lib${PN}.so{,.1.4} || die - ln -sf lib${PN}.so.1.4 lib/lib${PN}.so.1 || die - ln -sf lib${PN}.so.1.4 lib/lib${PN}.so || die -} - -src_test() { - emake test lapacktest - cd testing/lin || die - # we need to access this while running the tests - addwrite /dev/nvidiactl - addwrite /dev/nvidia0 - LD_LIBRARY_PATH="${S}"/lib ${EPYTHON} lapack_testing.py || die -} - -src_install() { - dolib.so lib/lib*$(get_libname)* - use static-libs && dolib.a lib/lib*.a - insinto /usr/include/${PN} - doins include/*.h - insinto /usr/$(get_libdir)/pkgconfig - doins ${PN}.pc - dodoc README ReleaseNotes -} diff --git a/sci-libs/magma/magma-1.4.1.ebuild b/sci-libs/magma/magma-1.4.1.ebuild deleted file mode 100644 index c50eea5b55ac..000000000000 --- a/sci-libs/magma/magma-1.4.1.ebuild +++ /dev/null @@ -1,124 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -FORTRAN_STANDARD="77 90" - -inherit cuda eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator python-any-r1 - -DESCRIPTION="Matrix Algebra on GPU and Multicore Architectures" -HOMEPAGE="http://icl.cs.utk.edu/magma/" -SRC_URI="http://icl.cs.utk.edu/projectsfiles/${PN}/downloads/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~amd64-linux" -IUSE="fermi kepler static-libs test" - -REQUIRED_USE="?? ( fermi kepler )" - -RDEPEND=" - dev-util/nvidia-cuda-toolkit - virtual/cblas - virtual/lapack" -DEPEND="${RDEPEND} - virtual/pkgconfig - test? ( ${PYTHON_DEPS} )" - -# We have to have write acccess /dev/nvidia0 and /dev/nvidiactl and the portage -# user is (usually) not in the video group -RESTRICT="userpriv !test? ( test )" - -pkg_setup() { - fortran-2_pkg_setup - use test && python-any-r1_pkg_setup -} - -src_prepare() { - # distributed pc file not so useful so replace it - cat <<-EOF > ${PN}.pc - prefix=${EPREFIX}/usr - libdir=\${prefix}/$(get_libdir) - includedir=\${prefix}/include/${PN} - Name: ${PN} - Description: ${DESCRIPTION} - Version: ${PV} - URL: ${HOMEPAGE} - Libs: -L\${libdir} -lmagma - Libs.private: -lm -lpthread -ldl -lcublas -lcudart - Cflags: -I\${includedir} - Requires: cblas lapack - EOF - - if [[ $(tc-getCC) =~ gcc ]]; then - local eopenmp=-fopenmp - elif [[ $(tc-getCC) =~ icc ]]; then - local eopenmp=-openmp - else - elog "Cannot detect compiler type so not setting openmp support" - fi - append-flags -fPIC ${eopenmp} - append-ldflags -Wl,-soname,lib${PN}.so.1.4 ${eopenmp} - - cuda_src_prepare -} - -src_configure() { - cat <<-EOF > make.inc - ARCH = $(tc-getAR) - ARCHFLAGS = cr - RANLIB = $(tc-getRANLIB) - NVCC = nvcc - CC = $(tc-getCXX) - FORT = $(tc-getFC) - INC = -I"${EPREFIX}/opt/cuda/include" -DADD_ -DCUBLAS_GFORTRAN - OPTS = ${CFLAGS} -fPIC - FOPTS = ${FFLAGS} -fPIC -x f95-cpp-input - F77OPTS = ${FFLAGS} -fPIC - NVOPTS = -DADD_ -DUNIX ${NVCCFLAGS} - LDOPTS = ${LDFLAGS} - LOADER = $(tc-getFC) - LIBBLAS = $($(tc-getPKG_CONFIG) --libs cblas) - LIBLAPACK = $($(tc-getPKG_CONFIG) --libs lapack) - CUDADIR = ${EPREFIX}/opt/cuda - LIBCUDA = -L\$(CUDADIR)/$(get_libdir) -lcublas -lcudart - LIB = -pthread -lm -ldl \$(LIBCUDA) \$(LIBBLAS) \$(LIBLAPACK) -lstdc++ - EOF - if use kepler; then - echo >> make.inc "GPU_TARGET = Kepler" - elif use fermi; then - echo >> make.inc "GPU_TARGET = Fermi" - else # See http://icl.cs.utk.edu/magma/forum/viewtopic.php?f=2&t=227 - echo >> make.inc "GPU_TARGET = Tesla" - fi -} - -src_compile() { - emake lib - emake shared - mv lib/lib${PN}.so{,.1.4} || die - ln -sf lib${PN}.so.1.4 lib/lib${PN}.so.1 || die - ln -sf lib${PN}.so.1.4 lib/lib${PN}.so || die -} - -src_test() { - emake test lapacktest - cd testing/lin || die - # we need to access this while running the tests - addwrite /dev/nvidiactl - addwrite /dev/nvidia0 - LD_LIBRARY_PATH="${S}"/lib ${EPYTHON} lapack_testing.py || die -} - -src_install() { - dolib.so lib/lib*$(get_libname)* - use static-libs && dolib.a lib/lib*.a - insinto /usr/include/${PN} - doins include/*.h - insinto /usr/$(get_libdir)/pkgconfig - doins ${PN}.pc - dodoc README ReleaseNotes -} diff --git a/sci-libs/magma/metadata.xml b/sci-libs/magma/metadata.xml deleted file mode 100644 index 63989ce9caba..000000000000 --- a/sci-libs/magma/metadata.xml +++ /dev/null @@ -1,18 +0,0 @@ - - - - - sci@gentoo.org - Gentoo Science Project - - - The Matrix Algebra on GPU and Multicore Architectures - project aims to develop a dense linear algebra library - similar to LAPACK but for heterogeneous/hybrid architectures, starting - with current "Multicore+GPU" systems. - - - Compile for GPU NVIDIA Fermi family (2.x cards) - Compile for GPU NVIDIA Kepler family (GF 6xx cards) - - diff --git a/sci-libs/metis/Manifest b/sci-libs/metis/Manifest index 442ebc5ed2ad..b5b7cb018d1e 100644 --- a/sci-libs/metis/Manifest +++ b/sci-libs/metis/Manifest @@ -7,5 +7,5 @@ DIST metis-4.0.3.tar.gz 522624 BLAKE2B a09d15de35deb0a41bc7f54254effc68d977349e0 DIST metis-5.1.0.tar.gz 4984968 BLAKE2B c5f8ff552fce7e7cc02740e6197c9deb5e05e8bc2e2e56cad0cba85705eec6990b511182930c8758fd16a18015f54c8a4827038039bc3c58ee41df468ea175bc SHA512 deea47749d13bd06fbeaf98a53c6c0b61603ddc17a43dae81d72c8015576f6495fd83c11b0ef68d024879ed5415c14ebdbd87ce49c181bdac680573bea8bdb25 EBUILD metis-4.0.3-r1.ebuild 843 BLAKE2B d20fe57aeaecc542db25429495efff913b9c33719d08626686bdaddeac1e54d84cd0cabe2ebb2837b283a823bd54e7f0c513e7863a208199afdd918723db422a SHA512 b61f5b756ac0c31e509c825cb52464ea43e71764cb4431c36aed09a180ee36523c5b00e78cedd532459231674d7456947999f97f0d7433cf01bb61ba4c959dc0 EBUILD metis-4.0.3-r2.ebuild 868 BLAKE2B 6120a07d9c342b296c2e6e6c7df8862982ff732afd6dd96cee3b190b80f18c4077507e1059ff1be3f573cd1b7469aaa2fdc822f2c3fbf2b035796860b463c2af SHA512 987f89de9887e7a5e0aeb29de9f2fcd9d057785becf7e9f7ed31a238ba39aff3f6db6b6699c0428d9d88361c4b4e2655e39e850dd8dd402057873813ec16784c -EBUILD metis-5.1.0-r4.ebuild 1479 BLAKE2B 40880ea6432947d892720bb1b31f29d38d59d8a41a420f4b443299e663fac7e6ef9658673267008d872bc37d503b5e6782eb4907a173ebb0c2b3afb84b7bae5f SHA512 6df2841404d1d80901319ce9d932b4b44f118ff05bd63cd4759e85f315d959b0182ed58fc4657a2a2d9dbe20bdec8fb33c1bdcdf4816e7d94dd7009f5dcbd636 +EBUILD metis-5.1.0-r4.ebuild 1478 BLAKE2B de2c08a22218ddaca73624764bf9ee1d13598588ecf27e46a59afce16df57b5f5a1836e98d820702c6dc24412ce459dcda8cc65ae72ac73e12176ea988f9d204 SHA512 bd41163f6c7d425125d3a2901eab1a3425d0f476d0268d03d91098d949533a865dbb11729ddb722e47b638ff92416d0cd7bc71219dd44e5804f93660aef08e9a MISC metadata.xml 618 BLAKE2B 862f647c5562ab3d781bd3cb6a4ec1470cd45941043bbf1b9d09d41c5ad528546e338663400d322d8b1cb6b57e33910a9520b818a81c376451af0da6c037aa34 SHA512 7f46d28a97805eddd9d547ba66263cd395be46b495f4a9651312cfb421714b614d2c7415142c929c99386d32799fe78ea10110471b702487be4072b981ca17ee diff --git a/sci-libs/metis/metis-5.1.0-r4.ebuild b/sci-libs/metis/metis-5.1.0-r4.ebuild index 73cb6ab6964c..1e704d508cc9 100644 --- a/sci-libs/metis/metis-5.1.0-r4.ebuild +++ b/sci-libs/metis/metis-5.1.0-r4.ebuild @@ -11,7 +11,7 @@ SRC_URI="http://glaros.dtc.umn.edu/gkhome/fetch/sw/${PN}/${P}.tar.gz" LICENSE="Apache-2.0" SLOT="0" -KEYWORDS="amd64 ~arm arm64 ~hppa ~ia64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux" +KEYWORDS="amd64 arm arm64 ~hppa ~ia64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux" IUSE="doc openmp" RDEPEND="!sci-libs/parmetis" diff --git a/sci-libs/mkl/Manifest b/sci-libs/mkl/Manifest index 96cd5d09d210..b9b1f335034a 100644 --- a/sci-libs/mkl/Manifest +++ b/sci-libs/mkl/Manifest @@ -1,4 +1,13 @@ -AUX 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29b75f9f3ac32363d1cfe349028e12633f9bb3fdc1d20f13a0269c2dadc0e672349cf9eac99d2980af8e4407b2b254d12d92a18d24c8540b12e7bf0cfd86fc46 SHA512 626cabd6a497e7b53d8f118b1bec44236d5887a6e8a759cd36bfd0b0967fc18249d4a65d95aabfb52b802c73837ac491c9a536b7bb4d474e9b4d754df43f326d +MISC metadata.xml 716 BLAKE2B 2f80a154c168cfde53f9da85cbde7ae08b991a19958ae1f103c482379a579ccea7d2b1472c3ac8007532d3feddb7d1be1c52378d367b199877492eff66fbd660 SHA512 303b063b9bad6ff610fee4913115828d13cb7ab3f645eabaca9d349310d9a2830fafb99e9cac22f3640f38c85649870d2b6b6b2c793a101352d01f37ae334be3 diff --git a/sci-libs/mkl/files/mkl-10.0.2.018-openmpi.patch b/sci-libs/mkl/files/mkl-10.0.2.018-openmpi.patch deleted file mode 100644 index 0519b5fdebdb..000000000000 --- a/sci-libs/mkl/files/mkl-10.0.2.018-openmpi.patch +++ /dev/null @@ -1,18 +0,0 @@ ---- a/interfaces/fftw2x_cdft/makefile 2008-03-11 23:26:26.287984332 +0000 -+++ b/interfaces/fftw2x_cdft/makefile 2008-03-13 10:56:44.755095617 +0000 -@@ -172,6 +172,15 @@ - endif - - -+ifeq ($(mpi),openmpi) -+CS = mpicc -+ifdef mpidir -+_CS = $(mpidir)/bin/$(CS) -+else -+_CS = $(CS) -+endif -+endif -+ - vpath %.c wrappers - - $(WRP): %.o: %.c diff --git a/sci-libs/mkl/files/mkl-dynamic-ilp64-iomp.pc b/sci-libs/mkl/files/mkl-dynamic-ilp64-iomp.pc new file mode 100644 index 000000000000..c68c025daa23 --- /dev/null +++ b/sci-libs/mkl/files/mkl-dynamic-ilp64-iomp.pc @@ -0,0 +1,10 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include/mkl + +Name: mkl-dynamic-ilp64-iomp +Description: Intel(R) Math Kernel Library +Version: Gentoo +URL: https://software.intel.com/en-us/mkl +Libs: -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl +Cflags: -I${includedir} diff --git a/sci-libs/mkl/files/mkl-dynamic-ilp64-seq.pc b/sci-libs/mkl/files/mkl-dynamic-ilp64-seq.pc new file mode 100644 index 000000000000..0494c50f9da3 --- /dev/null +++ b/sci-libs/mkl/files/mkl-dynamic-ilp64-seq.pc @@ -0,0 +1,10 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include/mkl + +Name: mkl-dynamic-ilp64-seq +Description: Intel(R) Math Kernel Library +Version: Gentoo +URL: https://software.intel.com/en-us/mkl +Libs: -lmkl_intel_ilp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl +Cflags: -I${includedir} diff --git a/sci-libs/mkl/files/mkl-dynamic-lp64-iomp.pc b/sci-libs/mkl/files/mkl-dynamic-lp64-iomp.pc new file mode 100644 index 000000000000..4e8bb50bb9ca --- /dev/null +++ b/sci-libs/mkl/files/mkl-dynamic-lp64-iomp.pc @@ -0,0 +1,10 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include/mkl + +Name: mkl-dynamic-lp64-iomp +Description: Intel(R) Math Kernel Library +Version: Gentoo +URL: https://software.intel.com/en-us/mkl +Libs: -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl +Cflags: -I${includedir} diff --git a/sci-libs/mkl/files/mkl-dynamic-lp64-seq.pc b/sci-libs/mkl/files/mkl-dynamic-lp64-seq.pc new file mode 100644 index 000000000000..e0386e29fa33 --- /dev/null +++ b/sci-libs/mkl/files/mkl-dynamic-lp64-seq.pc @@ -0,0 +1,10 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include + +Name: mkl-dynamic-lp64-seq +Description: Intel(R) Math Kernel Library +Version: Gentoo +URL: https://software.intel.com/en-us/mkl +Libs: -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm -ldl +Cflags: -I${includedir} diff --git a/sci-libs/mkl/files/mkl-sdl-ilp64.pc b/sci-libs/mkl/files/mkl-sdl-ilp64.pc new file mode 100644 index 000000000000..e1648f7f934a --- /dev/null +++ b/sci-libs/mkl/files/mkl-sdl-ilp64.pc @@ -0,0 +1,9 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include/mkl + +Name: mkl-sdl-ilp64 +Version: Gentoo +Description: Intel(R) Math Kernel Library +Libs: -lmkl_rt -lpthread -lm -ldl +Cflags: -I${includedir} -DMKL_ILP64 -m64 diff --git a/sci-libs/mkl/files/mkl-sdl-lp64.pc b/sci-libs/mkl/files/mkl-sdl-lp64.pc new file mode 100644 index 000000000000..506851e43fed --- /dev/null +++ b/sci-libs/mkl/files/mkl-sdl-lp64.pc @@ -0,0 +1,9 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include/mkl + +Name: mkl-sdl-ilp64 +Version: Gentoo +Description: Intel(R) Math Kernel Library +Libs: -lmkl_rt -lpthread -lm -ldl +Cflags: -I${includedir} -m64 diff --git a/sci-libs/mkl/files/mkl-static-ilp64-iomp.pc b/sci-libs/mkl/files/mkl-static-ilp64-iomp.pc new file mode 100644 index 000000000000..911c9d498938 --- /dev/null +++ b/sci-libs/mkl/files/mkl-static-ilp64-iomp.pc @@ -0,0 +1,10 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include + +Name: mkl-static-ilp64-iomp +Description: Intel(R) Math Kernel Library +Version: Gentoo +URL: https://software.intel.com/en-us/mkl +Libs: -Wl,--start-group libmkl_intel_ilp64.a libmkl_intel_thread.a libmkl_core.a -Wl,--end-group -liomp5 -lpthread -lm -ldl +Cflags: -I${includedir} diff --git a/sci-libs/mkl/files/mkl-static-ilp64-seq.pc b/sci-libs/mkl/files/mkl-static-ilp64-seq.pc new file mode 100644 index 000000000000..aff2ff30ff8c --- /dev/null +++ b/sci-libs/mkl/files/mkl-static-ilp64-seq.pc @@ -0,0 +1,10 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include + +Name: mkl-static-ilp64-seq +Description: Intel(R) Math Kernel Library +Version: Gentoo +URL: https://software.intel.com/en-us/mkl +Libs: -Wl,--start-group libmkl_intel_ilp64.a libmkl_sequential.a libmkl_core.a -Wl,--end-group -lpthread -lm -ldl +Cflags: -I${includedir} diff --git a/sci-libs/mkl/files/mkl-static-lp64-iomp.pc b/sci-libs/mkl/files/mkl-static-lp64-iomp.pc new file mode 100644 index 000000000000..ba799d399f9d --- /dev/null +++ b/sci-libs/mkl/files/mkl-static-lp64-iomp.pc @@ -0,0 +1,10 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include + +Name: mkl-static-lp64-iomp +Description: Intel(R) Math Kernel Library +Version: Gentoo +URL: https://software.intel.com/en-us/mkl +Libs: -Wl,--start-group libmkl_intel_lp64.a libmkl_intel_thread.a libmkl_core.a -Wl,--end-group -liomp5 -lpthread -lm -ldl +Cflags: -I${includedir} diff --git a/sci-libs/mkl/files/mkl-static-lp64-seq.pc b/sci-libs/mkl/files/mkl-static-lp64-seq.pc new file mode 100644 index 000000000000..1c96e5483d5f --- /dev/null +++ b/sci-libs/mkl/files/mkl-static-lp64-seq.pc @@ -0,0 +1,10 @@ +prefix=@PREFIX@ +exec_prefix=${prefix} +includedir=${prefix}/include + +Name: mkl-static-lp64-seq +Description: Intel(R) Math Kernel Library +Version: Gentoo +URL: https://software.intel.com/en-us/mkl +Libs: -Wl,--start-group libmkl_intel_lp64.a libmkl_sequential.a libmkl_core.a -Wl,--end-group -lpthread -lm -ldl +Cflags: -I${includedir} diff --git a/sci-libs/mkl/metadata.xml b/sci-libs/mkl/metadata.xml index 446435794d0d..59fd7e51f0f7 100644 --- a/sci-libs/mkl/metadata.xml +++ b/sci-libs/mkl/metadata.xml @@ -13,8 +13,4 @@ capacities. The package is installed as binary and has a restrictive license. Please see license terms and home page for proper use. - - Installs the BLAS/LAPACK FORTRAN95 static libraries - Installs the 64 bits integer libraries - diff --git a/sci-libs/mkl/mkl-10.0.5.025-r1.ebuild b/sci-libs/mkl/mkl-10.0.5.025-r1.ebuild deleted file mode 100644 index bd88e59f5c51..000000000000 --- a/sci-libs/mkl/mkl-10.0.5.025-r1.ebuild +++ /dev/null @@ -1,366 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit check-reqs fortran-2 toolchain-funcs - -PID=1232 -PB=${PN} -P_ARCHIVE=l_${PN}_p_${PV} - -DESCRIPTION="Intel(R) Math Kernel Library: linear algebra, fft, math functions" -HOMEPAGE="https://software.intel.com/en-us/mkl" -SRC_URI="http://registrationcenter-download.intel.com/irc_nas/${PID}/${P_ARCHIVE}.tgz" - -SLOT="0" -LICENSE="Intel-SDP" -KEYWORDS="-* ~amd64 ~ia64 ~x86" -IUSE="doc fftw fortran95 int64 mpi" - -RESTRICT="bindist strip mirror" - -DEPEND=" - app-eselect/eselect-blas - app-eselect/eselect-cblas - app-eselect/eselect-lapack" -RDEPEND="${DEPEND} - doc? ( app-doc/blas-docs app-doc/lapack-docs ) - mpi? ( virtual/mpi )" - -PATCHES=( - "${FILESDIR}"/${PN}-10.0.2.018-openmpi.patch # allow openmpi to work -) - -MKL_DIR=/opt/intel/${PN}/${PV} -INTEL_LIC_DIR=/opt/intel/licenses - -CHECKREQS_DISK_BUILD=3500M - -QA_PREBUILT="opt/intel/${PN}/${PV}/*" - -get_fcomp() { - case $(tc-getFC) in - *gfortran* ) - FCOMP="gfortran" ;; - ifort ) - FCOMP="ifc" ;; - * ) - FCOMP=$(tc-getFC) ;; - esac -} - -pkg_setup() { - check-reqs_pkg_setup - fortran-2_pkg_setup - # Check the license - if [[ -z ${MKL_LICENSE} ]]; then - MKL_LICENSE="$(grep -ls MKern ${ROOT}${INTEL_LIC_DIR}/* | tail -n 1)" - MKL_LICENSE=${MKL_LICENSE/${ROOT}/} - fi - if [[ -z ${MKL_LICENSE} ]]; then - eerror "Did not find any valid mkl license." - eerror "Register at ${HOMEPAGE} to receive a license" - eerror "and place it in ${INTEL_LIC_DIR} or run:" - eerror "export MKL_LICENSE=/my/license/file emerge mkl" - die "license setup failed" - fi - - # Check if we have enough free diskspace to install - CHECKREQS_DISK_BUILD="1100M" - check-reqs_pkg_setup - - # Check and setup fortran - if use fortran95; then - # blas95 and lapack95 don't compile with gfortran < 4.2 - [[ $(tc-getFC) =~ (gfortran|g77) ]] && [[ $(gcc-major-version)$(gcc-minor-version) -lt 42 ]] && - die "blas95 and lapack95 don't compile with gfortran < 4.2" - fi - MKL_FC="gnu" - [[ $(tc-getFC) =~ if ]] && MKL_FC="intel" - - # build profiles according to what compiler is installed - MKL_CC="gnu" - [[ $(tc-getCC) == icc ]] && MKL_CC="intel" - - if has_version sys-cluster/mpich; then - MKL_MPI=mpich - elif has_version sys-cluster/mpich2; then - MKL_MPI=mpich2 - elif has_version sys-cluster/openmpi; then - MKL_MPI=openmpi - else - MKL_MPI=intelmpi - fi - get_fcomp -} - -src_unpack() { - default - cd "${WORKDIR}/${P_ARCHIVE}"/install || die - - cp ${MKL_LICENSE} "${WORKDIR}"/ || die - MKL_LIC="$(basename ${MKL_LICENSE})" - - # binary blob extractor installs rpm leftovers in /opt/intel - addwrite /opt/intel - # undocumented features: INSTALLMODE_mkl=NONRPM - - # We need to install mkl non-interactively. - # If things change between versions, first do it interactively: - # tar xf l_*; ./install.sh --duplicate mkl.ini; - # The file will be instman/mkl.ini - # Then check it and modify the ebuild-created one below - # --norpm is required to be able to install 10.x - cat > mkl.ini <<-EOF || die - [MKL] - EULA_ACCEPT_REJECT=ACCEPT - FLEXLM_LICENSE_LOCATION=${WORKDIR}/${MKL_LIC} - INSTALLMODE_mkl=NONRPM - INSTALL_DESTINATION=${S} - EOF - einfo "Extracting ..." - ./install \ - --silent ./mkl.ini \ - --installpath "${S}" \ - --log log.txt &> /dev/null \ - || die - - if [[ -z $(find "${S}" -name libmkl.so) ]]; then - eerror "Could not find extracted files" - eerror "See ${PWD}/log.txt to see why" - die "extracting failed" - fi -} - -src_prepare() { - default - - # remove left over - rm -f /opt/intel/.*mkl*.log /opt/intel/intel_sdp_products.db || die - - # remove unused stuff and set up intel names - rm -rf "${WORKDIR}"/l_* || die - - case ${ARCH} in - x86) MKL_ARCH=32 - MKL_KERN=ia32 - rm -rf lib*/{em64t,64} || die - ;; - - amd64) MKL_ARCH=em64t - MKL_KERN=em64t - rm -rf lib*/{32,64} || die - ;; - - ia64) MKL_ARCH=64 - MKL_KERN=ipf - rm -rf lib*/{32,em64t} || die - ;; - esac - MKL_LIBDIR=${MKL_DIR}/lib/${MKL_ARCH} - # fix env scripts - sed -i \ - -e "s:${S}:${MKL_DIR}:g" \ - tools/environment/*sh || die "sed support file failed" -} - -src_compile() { - cd "${S}"/interfaces || die - if use fortran95; then - einfo "Compiling fortan95 static lib wrappers" - local myconf="lib${MKL_ARCH}" - [[ $(tc-getFC) =~ gfortran ]] && \ - myconf="${myconf} FC=gfortran" - if use int64; then - myconf="${myconf} interface=ilp64" - [[ $(tc-getFC) =~ gfortran ]] && \ - myconf="${myconf} FOPTS=-fdefault-integer-8" - fi - local x - for x in blas95 lapack95; do - emake -C ${x} ${myconf} - done - fi - - if use fftw; then - local fftwdirs="fftw2xc fftw2xf fftw3xc fftw3xf" - local myconf="lib${MKL_ARCH} compiler=${MKL_CC}" - if use mpi; then - fftwdirs="${fftwdirs} fftw2x_cdft" - myconf="${myconf} mpi=${MKL_MPI}" - fi - einfo "Compiling fftw static lib wrappers" - local x - for x in ${fftwdirs}; do - emake -C ${x} ${myconf} - done - fi -} - -src_test() { - cd "${S}"/tests - local myconf - local testdirs="blas cblas" - local x - use int64 && myconf="${myconf} interface=ilp64" - # buggy with g77 and gfortran - #if use mpi; then - # testdirs="${testdirs} scalapack" - # myconf="${myconf} mpi=${MKL_MPI}" - #fi - for x in ${testdirs}; do - einfo "Testing ${x}" - emake -C ${x} \ - compiler=${MKL_FC} \ - ${myconf} \ - so${MKL_ARCH} - done -} - -mkl_make_generic_profile() { - cd "${S}" || die - # produce eselect files - # don't make them in FILESDIR, it changes every major version - cat > eselect.blas <<-EOF || die - ${MKL_LIBDIR}/libmkl_${MKL_KERN}.a /usr/@LIBDIR@/libblas.a - ${MKL_LIBDIR}/libmkl.so /usr/@LIBDIR@/libblas.so - ${MKL_LIBDIR}/libmkl.so /usr/@LIBDIR@/libblas.so.0 - EOF - cat > eselect.cblas <<-EOF || die - ${MKL_LIBDIR}/libmkl_${MKL_KERN}.a /usr/@LIBDIR@/libcblas.a - ${MKL_LIBDIR}/libmkl.so /usr/@LIBDIR@/libcblas.so - ${MKL_LIBDIR}/libmkl.so /usr/@LIBDIR@/libcblas.so.0 - ${MKL_DIR}/include/mkl_cblas.h /usr/include/cblas.h - EOF - cat > eselect.lapack <<-EOF || die - ${MKL_LIBDIR}/libmkl_lapack.a /usr/@LIBDIR@/liblapack.a - ${MKL_LIBDIR}/libmkl_lapack.so /usr/@LIBDIR@/liblapack.so - ${MKL_LIBDIR}/libmkl_lapack.so /usr/@LIBDIR@/liblapack.so.0 - EOF -} - -# usage: mkl_add_profile -mkl_add_profile() { - cd "${S}" || die - local prof=${1} - local x - for x in blas cblas lapack; do - cat > ${x}-${prof}.pc <<-EOF || die - prefix=${MKL_DIR} - libdir=${MKL_LIBDIR} - includedir=\${prefix}/include - Name: ${x} - Description: Intel(R) Math Kernel Library implementation of ${x} - Version: ${PV} - URL: ${HOMEPAGE} - EOF - done - cat >> blas-${prof}.pc <<-EOF || die - Libs: -Wl,--no-as-needed -L\${libdir} ${2} ${3} -lmkl_core ${4} -lpthread - EOF - cat >> cblas-${prof}.pc <<-EOF || die - Requires: blas - Libs: -Wl,--no-as-needed -L\${libdir} ${2} ${3} -lmkl_core ${4} -lpthread - Cflags: -I\${includedir} - EOF - cat >> lapack-${prof}.pc <<-EOF || die - Requires: blas - Libs: -Wl,--no-as-needed -L\${libdir} ${2} ${3} -lmkl_core -lmkl_lapack ${4} -lpthread - EOF - insinto ${MKL_LIBDIR} - for x in blas cblas lapack; do - doins ${x}-${prof}.pc - cp eselect.${x} eselect.${x}.${prof} || die - echo "${MKL_LIBDIR}/${x}-${prof}.pc /usr/@LIBDIR@/pkgconfig/${x}.pc" \ - >> eselect.${x}.${prof} || die - eselect ${x} add $(get_libdir) eselect.${x}.${prof} ${prof} - done -} - -mkl_make_profiles() { - local clib="gf" - has_version 'dev-lang/ifc' && clib+=" intel" - local slib="-lmkl_sequential" - local rlib="-liomp5" - local pbase=${PN} - local c - for c in ${clib}; do - local ilib="-lmkl_${c}_lp64" - use x86 && ilib="-lmkl_${c}" - local tlib="-lmkl_${c/gf/gnu}_thread" - local comp="${c/gf/gfortran}" - comp="${comp/intel/ifort}" - mkl_add_profile ${pbase}-${comp} ${ilib} ${slib} - mkl_add_profile ${pbase}-${comp}-threads ${ilib} ${tlib} ${rlib} - if use int64; then - ilib="-lmkl_${c}_ilp64" - mkl_add_profile ${pbase}-${comp}-int64 ${ilib} ${slib} - mkl_add_profile ${pbase}-${comp}-threads-int64 ${ilib} ${tlib} ${rlib} - fi - done -} - -src_install() { - dodir ${MKL_DIR} - - # install license - if [[ ! -f ${INTEL_LIC_DIR}/${MKL_LIC} ]]; then - insinto ${INTEL_LIC_DIR} - doins "${WORKDIR}"/${MKL_LIC} - fi - - # install main stuff: cp faster than doins - einfo "Installing files..." - local cpdirs="benchmarks doc examples include interfaces lib man tests" - local doinsdirs="tools" - cp -pPR ${cpdirs} "${D}"${MKL_DIR} \ - || die "installing mkl failed" - insinto ${MKL_DIR} - doins -r ${doinsdirs} - dosym mkl_cblas.h ${MKL_DIR}/include/cblas.h - - # install blas/lapack profiles - mkl_make_generic_profile - mkl_make_profiles - - # install env variables - cat > 35mkl <<-EOF || die - MKLROOT=${MKL_DIR} - LDPATH=${MKL_LIBDIR} - MANPATH=${MKL_DIR}/man - EOF - doenvd 35mkl -} - -pkg_postinst() { - # if blas profile is mkl, set lapack and cblas profiles as mkl - local blas_prof=$(eselect blas show | cut -d' ' -f2) - local def_prof="mkl-gfortran-threads" - local x - has_version 'dev-lang/ifc' && def_prof="mkl-ifort-threads" - use int64 && def_prof="${def_prof}-int64" - for x in blas cblas lapack; do - local cur_prof=$(eselect ${x} show | cut -d' ' -f2) - if [[ -z ${cur_prof} || ${cur_prof} == ${def_prof} ]]; then - # work around eselect bug #189942 - local configfile="${ROOT}"/etc/env.d/${x}/$(get_libdir)/config - rm -f ${configfile} || die - eselect ${x} set ${def_prof} - elog "${x} has been eselected to ${def_prof}" - else - elog "Current eselected ${x} is ${current_lib}" - elog "To use one of mkl profiles, issue (as root):" - elog "\t eselect ${x} set " - fi - if [[ ${blas_prof} == mkl* && ${cur_prof} != ${blas_prof} ]]; then - eselect blas set ${def_prof} - elog "${x} is now set to ${def_prof} for consistency" - fi - done - if [[ $(gcc-major-version)$(gcc-minor-version) -lt 42 ]]; then - elog "Multi-threading OpenMP for GNU compilers only available" - elog "with gcc >= 4.2. Make sure you have a compatible version" - elog "and select it with gcc-config before selecting gnu profiles" - fi -} diff --git a/sci-libs/mkl/mkl-2020.4.304.ebuild b/sci-libs/mkl/mkl-2020.4.304.ebuild new file mode 100644 index 000000000000..e90f9cb25172 --- /dev/null +++ b/sci-libs/mkl/mkl-2020.4.304.ebuild @@ -0,0 +1,231 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +MULTILIB_COMPAT=( abi_x86_{32,64} ) +inherit multilib-build rpm + +MAGIC=16917 # from registration center +MY_P=${P/-/_} # mkl_2020.4.304 +MY_PV=$(ver_rs 2 '-') # 2020.4-304 + +DESCRIPTION="Intel Math Kernel Library" +HOMEPAGE="https://software.intel.com/en-us/intel-mkl" +SRC_URI="http://registrationcenter-download.intel.com/akdlm/irc_nas/tec/${MAGIC}/l_${MY_P}.tgz -> ${P}.tar.gz" +S="${WORKDIR}"/l_${MY_P} + +LICENSE="ISSL" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="static-libs" +RESTRICT="strip" + +# MKL uses Intel/LLVM OpenMP by default. +# One can change the threadding layer to "gnu" or "tbb" +# through the MKL_THREADING_LAYER env var. +RDEPEND=" + app-eselect/eselect-blas + app-eselect/eselect-lapack + sys-libs/libomp[${MULTILIB_USEDEP}] +" + +QA_PREBUILT="*" +QA_TEXTRELS="*" +QA_SONAME="*" +QA_MULTILIB_PATHS="/usr/lib.*/libmkl_tbb_thread.so" + +# first unpack all rpms +# find folders containing header like, static and dynamic lib files +# these are the only folders we care about +# find "${S}"/rpm -type f \( -name "*.a" -o -name "*.so" -o -wholename "*mkl/include*" \) \ +# | tr '/' ' ' | awk '{ print $2 }' | sort | uniq + +# ignore all conda-* rpms +# ignore all empty rpms +# information about rest: +# +# mkl-core-ps-32bit-2020.3-279-2020.3-279.x86_64.rpm | some prebuilt benchmark executables +# psxe-common-2020.3-111-2020.3-111.noarch.rpm +# comp-l-all-vars-19.1.2-279-19.1.2-279.noarch.rpm +# comp-nomcu-vars-19.1.2-279-19.1.2-279.noarch.rpm +# mkl-cluster-c-2020.3-279-2020.3-279.noarch.rpm +# mkl-cluster-f-2020.3-279-2020.3-279.noarch.rpm +# mkl-doc-2020-2020.3-279.noarch.rpm +# mkl-common-ps-2020.3-279-2020.3-279.noarch.rpm | only contains benchmarks +# compxe-pset-2020.3-111-2020.3-111.noarch.rpm | only contains benchmarks +# mkl-doc-ps-2020-2020.3-279.noarch.rpm +# mkl-common-2020.3-279-2020.3-279.noarch.rpm | setting up environment vars (might be needed for parallel studio) +# mkl-installer-license-2020.3-279-2020.3-279.noarch.rpm | already have license +# mkl-psxe-2020.3-111-2020.3-111.noarch.rpm | useless files +# mkl-common-c-ps-2020.3-279-2020.3-279.noarch.rpm | contained in common-c + +INTEL_DIST_X86_RPMS=( + mkl-core-32bit + mkl-core-rt-32bit + mkl-f95-32bit + mkl-gnu-32bit + mkl-gnu-f-32bit + mkl-gnu-f-rt-32bit + mkl-gnu-rt-32bit + mkl-tbb-32bit + mkl-tbb-rt + intel-openmp-32bit-19.1.3-304-19.1.3-304.x86_64.rpm +) +INTEL_DIST_AMD64_RPMS=( + mkl-cluster + mkl-cluster-rt + mkl-core + mkl-core-ps + mkl-core-rt + mkl-f95 + mkl-gnu + mkl-gnu-f + mkl-gnu-rt + mkl-gnu-f-rt + mkl-pgi + mkl-pgi-rt + mkl-tbb + mkl-tbb-rt + intel-openmp-19.1.3-304-19.1.3-304.x86_64.rpm +) +INTEL_DIST_DAT_RPMS=( + mkl-common-c + mkl-common-f + mkl-f95-common +) + +rpm_dirname() { + local rpm="${1}" suffix="x86_64" + if [[ $# -eq 2 ]]; then + suffix="$2" + fi + if [[ ! ${rpm} =~ "rpm" ]] ; then + rpm="intel-${rpm}-${MY_PV}-${MY_PV}.${suffix}" + fi + printf '%s\n' "${rpm%%.rpm}" +} + +rpm_unpack() { + local rpm="$1" suffix="x86_64" + if [[ $# -eq 2 ]]; then + suffix="$2" + fi + rpm="$(rpm_dirname $rpm $suffix)" + elog "Unpacking - ${rpm}.rpm" + rpmunpack "${rpm}.rpm" || die +} + +src_unpack() { + default + cd "${S}"/rpm + local rpm + for rpm in ${INTEL_DIST_DAT_RPMS[@]}; do + rpm_unpack ${rpm} noarch + done + if use abi_x86_64 ; then + for rpm in ${INTEL_DIST_AMD64_RPMS[@]}; do + rpm_unpack ${rpm} + done + fi + if use abi_x86_32 ; then + for rpm in ${INTEL_DIST_X86_RPMS[@]}; do + rpm_unpack ${rpm} + done + fi +} + +multilib_src_install() { + cd "${S}"/rpm + elog "current variant - ${MULTIBUILD_VARIANT}" + local rpm rpm_list libdir=$(get_libdir) + if [[ ${MULTIBUILD_VARIANT} =~ 'amd64' ]] ; then + rpm_list="${INTEL_DIST_AMD64_RPMS[@]}" + else + rpm_list="${INTEL_DIST_X86_RPMS[@]}" + fi + for rpm in ${rpm_list} ; do + rpm=$(rpm_dirname ${rpm}) + elog "installing libs from - ${rpm}" + local libso liba + for libso in $(find "${S}"/rpm/${rpm} -name "*.so") ; do + dolib.so "${libso}" + done + use static-libs && \ + for liba in $(find "${S}"/rpm/${rpm} -name "*.a") ; do + dolib.a "${liba}" + done + done + + dodir /usr/$(get_libdir)/blas/mkl + dosym ../../libmkl_rt.so usr/$(get_libdir)/blas/mkl/libblas.so + dosym ../../libmkl_rt.so usr/$(get_libdir)/blas/mkl/libblas.so.3 + dosym ../../libmkl_rt.so usr/$(get_libdir)/blas/mkl/libcblas.so + dosym ../../libmkl_rt.so usr/$(get_libdir)/blas/mkl/libcblas.so.3 + dodir /usr/$(get_libdir)/lapack/mkl + dosym ../../libmkl_rt.so usr/$(get_libdir)/lapack/mkl/liblapack.so + dosym ../../libmkl_rt.so usr/$(get_libdir)/lapack/mkl/liblapack.so.3 + dosym ../../libmkl_rt.so usr/$(get_libdir)/lapack/mkl/liblapacke.so + dosym ../../libmkl_rt.so usr/$(get_libdir)/lapack/mkl/liblapacke.so.3 + + # for some reason pkgconfig files are only for amd64 + [[ ${MULTIBUILD_VARIANT} =~ 'amd64' ]] || return + local pc_files=( "${FILESDIR}"/*.pc ) + insinto /usr/$(get_libdir)/pkgconfig + for pc in "${pc_files[@]}" ; do + doins "${pc}" + sed -e "s:@PREFIX@:${EPREFIX}/usr:" \ + -i "${ED}"/usr/$(get_libdir)/pkgconfig/${pc##*/} || die + done +} + +src_install() { + # install bunch of header like files + dodir /usr/include/mkl + for idir in $(find "${S}"/rpm -type d -wholename "*mkl/include"); do + cp -a "${idir}"/. "${ED}"/usr/include/mkl || die + done + + multilib_foreach_abi multilib_src_install +} + +library-provider_pkg_postinst() { + local libdir=$(get_libdir) me="mkl" + + # check blas + eselect blas add ${libdir} "${EROOT}"/usr/${libdir}/blas/${me} ${me} + local current_blas=$(eselect blas show ${libdir} | cut -d' ' -f2) + if [[ ${current_blas} == "${me}" || -z ${current_blas} ]]; then + eselect blas set ${libdir} ${me} + elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." + else + elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." + elog "To use blas [${me}] implementation, you have to issue (as root):" + elog "\t eselect blas set ${libdir} ${me}" + fi + + # check lapack + eselect lapack add ${libdir} "${EROOT}"/usr/${libdir}/lapack/${me} ${me} + local current_lapack=$(eselect lapack show ${libdir} | cut -d' ' -f2) + if [[ ${current_lapack} == "${me}" || -z ${current_lapack} ]]; then + eselect lapack set ${libdir} ${me} + elog "Current eselect: LAPACK ($libdir) -> [${current_blas}]." + else + elog "Current eselect: LAPACK ($libdir) -> [${current_blas}]." + elog "To use lapack [${me}] implementation, you have to issue (as root):" + elog "\t eselect lapack set ${libdir} ${me}" + fi +} + +pkg_postinst() { + multilib_foreach_abi library-provider_pkg_postinst +} + +library-provider_pkg_postrm() { + eselect blas validate + eselect lapack validate +} + +pkg_postrm() { + multilib_foreach_abi library-provider_pkg_postrm +} diff --git a/sci-libs/mpfi/Manifest b/sci-libs/mpfi/Manifest index 7e83527dfe12..e4127d198a5f 100644 --- a/sci-libs/mpfi/Manifest +++ b/sci-libs/mpfi/Manifest @@ -1,3 +1,5 @@ DIST mpfi-1.5.3.tar.bz2 447256 BLAKE2B 67bb9af362ec96c015571cbdaba09befc2241e0113b6177dd76eec97b619bbf9c924ba4d16583df664cafdb1a78c8700712e30633e91e5ae6f1d5e084c3ede5c SHA512 9c3cdf665fccff8b383c96827f4acb7aa62efdf7854cff271455273f00f8e7ecf84fbe191b02e5f51fe067aaae564fd2a0add062070ff5c1f542d61a021f967d +DIST mpfi-1.5.4.tgz 261696 BLAKE2B 264453870fbf18afc0876eef72a3fc9690e9eee1da5179831a24409159abe75b88dc373e2d20b8171c846e870ded876715b2c9034ab4f0d0f0ff10e34abd099d SHA512 72ba7d8c950f4d4e2c7a3da8570cdcec08f75b73580cdf64c4cc3b24f8add23c46ccf78a6de2158e81bd77e6efabceebbae418988d536e7484356b8102e10ce1 EBUILD mpfi-1.5.3.ebuild 647 BLAKE2B 9788b4f8d72e957544908117e0e8409530dd6c772ba4e8c1b730afe165e2cd88c945c3c709368372c4f7046d188c6419e0a360a437de9512bfea5d0be04012d2 SHA512 4e4a192a512b263522eca48b5fab60414bc5bfa6286c29d62cbe64f21560e57c7ba8aebec3d0686fe32e38e27c9bf0cb2485a878475daf2df2ccecffd5052efe +EBUILD mpfi-1.5.4.ebuild 645 BLAKE2B e7873908407165f12cdfac8108e4282d2f638a6b18df72c09e893fe947aa44153faae4d21f277990f56e52fab0f6a00656316d0948fa72240a87c23e6b2577e9 SHA512 6cc97b8965d2f8d4dd2f71e9c5553f11331491d89c51a0cec661d74ec25c488fb28e5c004fce30a5f819b43a1fe7f7dc20b4507d945cf8cc0d6783763f7b38d3 MISC metadata.xml 1029 BLAKE2B 51b40066219be20a21939a82e93c095573e3cadaf288430db3c0a46c83a6045dccb3b940505b6ee189d426a0e1e57b9135df202a6185848546a9f5a1e8316d7b SHA512 870810149f2a547a0db4df6c7997fadfeaee91d0a8a1d456fafba76c7c48e0e59e8a0415a10b46b89bf4930e1880b94d3b6d3f28443dda2bb7ea45a62fa3c8b4 diff --git a/sci-libs/mpfi/mpfi-1.5.4.ebuild b/sci-libs/mpfi/mpfi-1.5.4.ebuild new file mode 100644 index 000000000000..7c513767c675 --- /dev/null +++ b/sci-libs/mpfi/mpfi-1.5.4.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools + +DESCRIPTION="Multiple precision interval arithmetic library based on MPFR" +HOMEPAGE="http://perso.ens-lyon.fr/nathalie.revol/software.html" +SRC_URI="https://gforge.inria.fr/frs/download.php/file/38111/${P}.tgz" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~arm64 ~x86 ~amd64-linux ~x86-linux" + +DEPEND=" + dev-libs/gmp:0= + dev-libs/mpfr:0=" +RDEPEND="${DEPEND}" + +src_prepare() { + default + eautoreconf +} + +src_configure() { + econf --disable-static +} + +src_install() { + default + find "${ED}" -name '*.la' -delete || die +} diff --git a/sci-libs/openblas/Manifest b/sci-libs/openblas/Manifest index 69a615fb3c80..fa959779eeae 100644 --- a/sci-libs/openblas/Manifest +++ b/sci-libs/openblas/Manifest @@ -1,8 +1,11 @@ AUX dont-clobber-fflags.patch 1251 BLAKE2B 7451d67e8676be33c2070b9eea767d24d961eff708eec3f6544b68228963166138f844f51dde8d48f723412ce0fcb6d0da427d298c652156da56d34073a1c82c SHA512 d06cd469749c88c69e2bdab01b5c0c67105a756a6d4c3704842335261ad57f6e898ceb73943487396178ae99ccf2ee3e551ae5881996af54e36fb951c6be43dc AUX openblas-0.3.10-dont-clobber-fflags.patch 1209 BLAKE2B 8759226f8a2b9371a89434f14e5db6e10b079dec5b260b438811f476ceeded67bcf2a596c7f4892ec2b3388a3437c9cd276592bb01ebb84af69977002e0bbe88 SHA512 6b239e750a6c5baf6dfca58dc8036a1de34efd917839558d2b2ff1d6fab00067dfe953bfb0837d8f19e1f52cf5ab7f92f9e3f65f3963fd3ae9052c0a00d6065d +AUX openblas-0.3.12-shared-blas-lapack.patch 2008 BLAKE2B 2d3a4a90d8144cbf149b7711b67364176a94287f26448930b5a4fd29fe761fb250e9007c580fb1ffa8148c477e2f4057f9cd8d7aa07efeb85caa842802d358fd SHA512 3f0d4b480549565c838eba6371e0990c162f56a226f9d26e1639e012ae3f39809f8c6badcf8fdfbb1258f45367dbaff9c4c611b8b44bac27d341aea954f0133e AUX shared-blas-lapack.patch 5557 BLAKE2B 1e41b18e5a9c12eec9283c835e9b09e4ca89c6512f47a2f158f29c8a8a822d0365ad350177e379bec13f7c7574d8debd55a2f612027ff661c67ac7b226bb2370 SHA512 baa23f0c2bc8b7bc3384d7b8fa20eb5e095f20e1d8859badb55e680ccd435a851da6099b20aa203e46d62096ac93663ea130bea04dabf19432522e53139d393b DIST openblas-0.3.10.tar.gz 12246979 BLAKE2B 507aa3f058b841f477720cff98480afda5c3e236b688fb1a12ff45ce20c42c6e84c786d62a5db7e6de6d133d40286e58777fcb51d6542b7030629d55ba12086f SHA512 64a5f983b2f6e02cdb6e0f14433498cc5daa1ccfb49246f7a2dcd38f9982fa608f2abea069fe0e35012af8c1441c43d1f6418eaccd40795f5002fed1c36ce05d +DIST openblas-0.3.12.tar.gz 12325103 BLAKE2B 3d6706e59e83f87dd58b287753bf697de99e83c8a4484453f120d8f8c9c69ea5b481a143db04342a1dcb1779ce548a49618cf4941d08d636e12ed481305e8fb5 SHA512 1ff5a065c41f7e460857f8428fc77900b189f051fa8129eea9ae93237f234d387cc1c6e627c2c95636164f512d4d721d4229729f04a04e8d5f655abbf5463d98 DIST openblas-0.3.9.tar.gz 12189745 BLAKE2B 3cc4c6a403d6a52845cf4ff8cef254f57587e17e3d09bfb6ed7c02ad06a6002e50b340177c73a944c2a621c12b7f494c516025751c194d019662c0b4db17f4dc SHA512 c6b8ee465f1cf53b37f21ec3ff9a28d5cafe20fec59d8c1bff5923a9e1989dfa5ae8c032a5d43988fe7722ed08c64c7957a3d30e6ae917e2e7aa2977a91e67a3 -EBUILD openblas-0.3.10.ebuild 4100 BLAKE2B 4c5ea233e1d6efa39f0095aa346ca4ca4fcfd7456a862bf299ad2e161e3e5a5946ba20e5495168e9452cea26031418ea78b17bf82a09cad6b7aedda775fe4722 SHA512 d6a6096a691890f9e96c53d6dc41bbca5d4e33ff4fb988cb8dfb2b2fa18bdee38f2b4d777ca9c745ff99fc81660536df0b334eae667ac9fd92fda4c1ac47ec08 +EBUILD openblas-0.3.10.ebuild 4111 BLAKE2B 872a4bcffb2d76a03189131b7e742ba7d72f1b9d93d19ca9e00c0f688568c2e7a3ab00b598f3d3066b85d161a44cdc83562710200d61dc2b5ce5c095b3462fa8 SHA512 958088ad8866d3218b4d6be4820a1b6bcc512b6960abc21a654bc78b561b65e235a66281a1867d8ec217a4b96cfd178c894b0ef263a9f317241949368d4526f1 +EBUILD openblas-0.3.12-r1.ebuild 5746 BLAKE2B d68962c2c993f87836564febcc37311b93f4c17e49e9b9050923e9170f984d7cb8b74616f9bf1f5bd0e7fab3a06e6b053c9ac2f7c8988095715f9216437e845c SHA512 608cd1c978f76285de494bec53eea2647f0e7910a5fa7e70a59687cf27985da49b2548adfff51fd9a8323ee243a1f768acf4c38cee6fdcdd56b892951619785d EBUILD openblas-0.3.9-r1.ebuild 4075 BLAKE2B fe030c9249e08b2695cdacc10042ba128a184e2f21193d21a602bff4ec6d307fadae33937b721cb7aec7151e31e4427df95e08f639698492cd4154a43e04261d SHA512 dd96938cb36e36989e600955d4171241f66d2eb8725ba3e193cc08c7222fc6f0fea977358679eb6890d8dac6699aff1a601160ef425defd991c86381b35efd2c -MISC metadata.xml 1460 BLAKE2B 22d1770bd4a58a0be80b7b1b04a7a6909d6bc7ff166a242c46294a1d39f5adf928c9e6f00835b79ef1c2df1747efa3b04d9b380a964581eeb963ea17e453ec9b SHA512 da3e981cab096d3bc18077ac210ccb1b91350418969549467c22f286196b18fb080eeb8a6183247b47de65cbd0a7fb67a16f2e46911aac6c5e9e9f01c193764f +MISC metadata.xml 1546 BLAKE2B 3e6379f0e8624978c09272d6440f8234379ebc886e1f72d05f89ffd9914da46cd66d94f5d408f11bb585ac28bde6d222b89e2b9608de550d94fdcbae25e2d910 SHA512 a4680cd8f28c4028acfb9621281ee0a08916f62c99cec883e953390ac9d55d47fa3c667c4fabb54121f7010f67d1e180c1c1faa5eceffe6a89d379ef4419cca7 diff --git a/sci-libs/openblas/files/openblas-0.3.12-shared-blas-lapack.patch b/sci-libs/openblas/files/openblas-0.3.12-shared-blas-lapack.patch new file mode 100644 index 000000000000..55fb7d7c66ca --- /dev/null +++ b/sci-libs/openblas/files/openblas-0.3.12-shared-blas-lapack.patch @@ -0,0 +1,36 @@ +diff --git a/interface/Makefile b/interface/Makefile +index 6b247b4..1297c73 100644 +--- a/interface/Makefile ++++ b/interface/Makefile +@@ -330,7 +330,7 @@ CCBLAS3OBJS = \ + cblas_chemm.$(SUFFIX) cblas_cherk.$(SUFFIX) cblas_cher2k.$(SUFFIX) \ + cblas_comatcopy.$(SUFFIX) cblas_cimatcopy.$(SUFFIX)\ + cblas_cgeadd.$(SUFFIX) +- ++ + CXERBLAOBJ = \ + cblas_xerbla.$(SUFFIX) + +@@ -2310,3 +2310,22 @@ cblas_zgeadd.$(SUFFIX) cblas_zgeadd.$(PSUFFIX) : zgeadd.c + cblas_xerbla.$(SUFFIX) cblas_xerbla.$(PSUFFIX) : xerbla.c + $(CC) -c $(CFLAGS) -DCBLAS $< -o $(@F) + ++##### ++shared-blas-lapack: libblas.so.3 libcblas.so.3 liblapack.so.3 liblapacke.so.3 ++ ++# The list of prerequisite is created by comparing with NETLIB BLAS public API. ++libblas.so.3: $(SBLAS1OBJS) $(SBLAS2OBJS) $(SBLAS3OBJS) $(DBLAS1OBJS) $(DBLAS2OBJS) $(DBLAS3OBJS) $(CBLAS1OBJS) $(CBLAS2OBJS) $(CBLAS3OBJS) $(ZBLAS1OBJS) $(ZBLAS2OBJS) $(ZBLAS3OBJS) ../kernel/lsame.o ../kernel/scabs1.o ../kernel/dcabs1.o ../driver/others/xerbla.o ++ $(CC) $(LDFLAGS) -shared -o $@ $^ -Wl,-soname,libblas.so.3 -L.. -lopenblas $(EXTRALIB) ++ ++libcblas.so.3: $(CSBLAS1OBJS) $(CSBLAS2OBJS) $(CSBLAS3OBJS) $(CDBLAS1OBJS) $(CDBLAS2OBJS) $(CDBLAS3OBJS) $(CCBLAS1OBJS) $(CCBLAS2OBJS) $(CCBLAS3OBJS) $(CZBLAS1OBJS) $(CZBLAS2OBJS) $(CZBLAS3OBJS) ../kernel/lsame.o ../kernel/scabs1.o ../kernel/dcabs1.o ../driver/others/xerbla.o ++ $(CC) $(LDFLAGS) -shared -o $@ $^ -Wl,-soname,libcblas.so.3 -L.. -lopenblas $(EXTRALIB) ++ ++# The prerequisites must match the symbols deleted in target delete-duplicate-lapack-objects ++liblapack.so.3: $(SLAPACKOBJS) $(DLAPACKOBJS) $(CLAPACKOBJS) $(ZLAPACKOBJS) ../kernel/lsame.o ../driver/others/xerbla.o ++ $(CC) $(LDFLAGS) -shared -o $@ $^ ../lapack-netlib/SRC/*.o -Wl,-soname,liblapack.so.3 -L.. -lopenblas $(EXTRALIB) ++ ++liblapacke.so.3: liblapack.so.3 ++ $(CC) $(LDFLAGS) -shared -o $@ `find ../lapack-netlib/LAPACKE -name "*.o"` -Wl,-soname,liblapacke.so.3 -L.. -lopenblas $(EXTRALIB) ++ ++clean:: ++ rm -f libblas.so.3 libcblas.so.3 liblapack.so.3 diff --git a/sci-libs/openblas/metadata.xml b/sci-libs/openblas/metadata.xml index 0661dad2eee9..0f6a98c1f26e 100644 --- a/sci-libs/openblas/metadata.xml +++ b/sci-libs/openblas/metadata.xml @@ -33,6 +33,9 @@ Build with pthread threading model + + Build the ReLAPACK extension to OpenBLAS + xianyi/OpenBLAS diff --git a/sci-libs/openblas/openblas-0.3.10.ebuild b/sci-libs/openblas/openblas-0.3.10.ebuild index 9d96c6fa9fd0..fad54321378c 100644 --- a/sci-libs/openblas/openblas-0.3.10.ebuild +++ b/sci-libs/openblas/openblas-0.3.10.ebuild @@ -11,7 +11,7 @@ SRC_URI="https://github.com/xianyi/OpenBLAS/archive/v${PV}.tar.gz -> ${P}.tar.gz LICENSE="BSD" SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" +KEYWORDS="~amd64 ~arm ~arm64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" IUSE="dynamic eselect-ldso index-64bit openmp pthread test" REQUIRED_USE="?? ( openmp pthread )" RESTRICT="!test? ( test )" @@ -84,7 +84,7 @@ src_test() { } src_install() { - emake install DESTDIR="${ED}" OPENBLAS_INCLUDE_DIR='$(PREFIX)'/include/${PN} \ + emake install DESTDIR="${D}" OPENBLAS_INCLUDE_DIR='$(PREFIX)'/include/${PN} \ OPENBLAS_LIBRARY_DIR='$(PREFIX)'/$(get_libdir) dodoc GotoBLAS_*.txt *.md Changelog.txt diff --git a/sci-libs/openblas/openblas-0.3.12-r1.ebuild b/sci-libs/openblas/openblas-0.3.12-r1.ebuild new file mode 100644 index 000000000000..ef165228c141 --- /dev/null +++ b/sci-libs/openblas/openblas-0.3.12-r1.ebuild @@ -0,0 +1,198 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit flag-o-matic fortran-2 toolchain-funcs + +DESCRIPTION="Optimized BLAS library based on GotoBLAS2" +HOMEPAGE="http://xianyi.github.com/OpenBLAS/" +SRC_URI="https://github.com/xianyi/OpenBLAS/archive/v${PV}.tar.gz -> ${P}.tar.gz" +S="${WORKDIR}"/OpenBLAS-${PV} + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~arm ~arm64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" +IUSE="dynamic eselect-ldso index-64bit openmp pthread +relapack test" +REQUIRED_USE="?? ( openmp pthread )" +RESTRICT="!test? ( test )" + +RDEPEND=" + eselect-ldso? ( + >=app-eselect/eselect-blas-0.2 + >=app-eselect/eselect-lapack-0.2 + ) +" +BDEPEND="virtual/pkgconfig" + +PATCHES=( + "${FILESDIR}/${PN}-0.3.12-shared-blas-lapack.patch" + "${FILESDIR}/${PN}-0.3.10-dont-clobber-fflags.patch" +) + +pkg_pretend() { + elog "This software has a massive number of options that" + elog "are configurable and it is *impossible* for all of" + elog "those to fit inside any manageable ebuild." + elog "The Gentoo provided package has enough to build" + elog "a fully optimized library for your targeted CPU." + elog "You can set the CPU target using the environment" + elog "variable - OPENBLAS_TARGET or it will be detected" + elog "automatically from the target toolchain (supports" + elog "cross compilation toolchains)." + elog "You can control the maximum number of threads" + elog "using OPENBLAS_NTHREAD, default=64 and number of " + elog "parallel calls to allow before further calls wait" + elog "using OPENBLAS_NPARALLEL, default=8." +} + +pkg_setup() { + fortran-2_pkg_setup + + # List of most configurable options - Makefile.rule + + # https://github.com/xianyi/OpenBLAS/pull/2663 + tc-export CC FC LD AR AS RANLIB + + # HOSTCC is used for scripting + export HOSTCC=$(tc-getBUILD_CC) + + # threading options + use openmp && tc-check-openmp + USE_THREAD=0 + if use openmp; then + USE_THREAD=1; USE_OPENMP=1; + elif use pthread; then + USE_THREAD=1; USE_OPENMP=0; + fi + export USE_THREAD USE_OPENMP + + # We need to filter these while building the library, and not just + # while building the test suite. Will hopefully get fixed upstream: + # https://github.com/xianyi/OpenBLAS/issues/2657 + use test && filter-flags "-fbounds-check" "-fcheck=bounds" "-fcheck=all" + + # disable submake with -j and default optimization flags + # in Makefile.system + # Makefile.rule says to not modify COMMON_OPT/FCOMMON_OPT... + export MAKE_NB_JOBS=-1 \ + COMMON_OPT=" " \ + FCOMMON_OPT=" " + + # Target CPU ARCH options + # generally detected automatically from cross toolchain + use dynamic && \ + export DYNAMIC_ARCH=1 \ + NO_AFFINITY=1 \ + TARGET=GENERIC + + export NUM_PARALLEL=${OPENBLAS_NPARALLEL:-8} \ + NUM_THREADS=${OPENBLAS_NTHREAD:-64} + + # setting OPENBLAS_TARGET to override auto detection + # in case the toolchain is not enough to detect + # https://github.com/xianyi/OpenBLAS/blob/develop/TargetList.txt + if ! use dynamic && [[ ! -z "${OPENBLAS_TARGET}" ]] ; then + export TARGET="${OPENBLAS_TARGET}" + fi + + export NO_STATIC=1 + + BUILD_RELAPACK=1 + if ! use relapack; then + BUILD_RELAPACK=0 + fi + + export PREFIX="${EPREFIX}/usr" BUILD_RELAPACK +} + +src_prepare() { + default + + # Disable tests by default + sed -e "/^all ::/s/tests //" -i Makefile || die + + # if 64bit-index is needed, create second library + # with LIBPREFIX=libopenblas64 + if use index-64bit; then + cp -aL "${S}" "${S}-index-64bit" || die + fi +} + +src_compile() { + default + cd interface || die + emake shared-blas-lapack + + if use index-64bit; then + emake -C"${S}-index-64bit" \ + INTERFACE64=1 \ + LIBPREFIX=libopenblas64 + fi +} + +src_test() { + emake tests +} + +src_install() { + emake install DESTDIR="${D}" \ + OPENBLAS_INCLUDE_DIR='$(PREFIX)'/include/${PN} \ + OPENBLAS_LIBRARY_DIR='$(PREFIX)'/$(get_libdir) + + dodoc GotoBLAS_*.txt *.md Changelog.txt + + if use index-64bit; then + dolib.so "${S}-index-64bit"/libopenblas64*.so* + fi + + if use eselect-ldso; then + insinto /usr/$(get_libdir)/blas/openblas/ + doins interface/libblas.so.3 + dosym libblas.so.3 usr/$(get_libdir)/blas/openblas/libblas.so + doins interface/libcblas.so.3 + dosym libcblas.so.3 usr/$(get_libdir)/blas/openblas/libcblas.so + + insinto /usr/$(get_libdir)/lapack/openblas/ + doins interface/liblapack.so.3 + dosym liblapack.so.3 usr/$(get_libdir)/lapack/openblas/liblapack.so + doins interface/liblapacke.so.3 + dosym liblapacke.so.3 usr/$(get_libdir)/lapack/openblas/liblapacke.so + fi +} + +pkg_postinst() { + use eselect-ldso || return + local libdir=$(get_libdir) me="openblas" + + # check blas + eselect blas add ${libdir} "${EROOT}"/usr/${libdir}/blas/${me} ${me} + local current_blas=$(eselect blas show ${libdir} | cut -d' ' -f2) + if [[ ${current_blas} == "${me}" || -z ${current_blas} ]]; then + eselect blas set ${libdir} ${me} + elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." + else + elog "Current eselect: BLAS/CBLAS ($libdir) -> [${current_blas}]." + elog "To use blas [${me}] implementation, you have to issue (as root):" + elog "\t eselect blas set ${libdir} ${me}" + fi + + # check lapack + eselect lapack add ${libdir} "${EROOT}"/usr/${libdir}/lapack/${me} ${me} + local current_lapack=$(eselect lapack show ${libdir} | cut -d' ' -f2) + if [[ ${current_lapack} == "${me}" || -z ${current_lapack} ]]; then + eselect lapack set ${libdir} ${me} + elog "Current eselect: LAPACK ($libdir) -> [${current_lapack}]." + else + elog "Current eselect: LAPACK ($libdir) -> [${current_lapack}]." + elog "To use lapack [${me}] implementation, you have to issue (as root):" + elog "\t eselect lapack set ${libdir} ${me}" + fi +} + +pkg_postrm() { + if use eselect-ldso; then + eselect blas validate + eselect lapack validate + fi +} diff --git a/sci-libs/opencascade/Manifest b/sci-libs/opencascade/Manifest index 55f332f70562..ce51f04edf85 100644 --- a/sci-libs/opencascade/Manifest +++ b/sci-libs/opencascade/Manifest @@ -2,5 +2,5 @@ AUX opencascade-7.4.0-find-qt.patch 3349 BLAKE2B 6520b3242927c86c4958f81f8a94e89 AUX opencascade-7.4.0-fix-install.patch 7870 BLAKE2B 4842ad5123a06a53b81ca80e4152434ee6d78a9eb5436a7a9f899651fcdb45a6f403f31bd6e4225611c1085fb91eb7a5640e5bb3fd49b71295ad0868b8e018dd SHA512 5315e82bd03a8782df8c72bbfb334d9cf739dd53f3aa22649f087c1b8b7fa5f88f7a80850c1f2e0c9dffd80a77dd99fd36e9674463535cbf48b896596c24f38e AUX opencascade-7.4.0.env.in 4611 BLAKE2B 3593cd4e05d33e466a975cf4641c56cd8e686310a148cc684591d3e08f8c4efd86e4df13500f11845e425b056b9c2c42f0f27a2a4d8cea524dc8fbb1c7dad703 SHA512 25f65e2b1e91fa78313334dab7d19b115bb7ff97ccefe7d18c45ab1817e12e10fdbe36babcb22e2a0d52bf7a0fbbdd2937523b773ddbb37635c1dd0d14de6253 DIST opencascade-7.4.0.tar.gz 49210449 BLAKE2B c92afe7551e9a066ad0940dcf49278b556a726f0534131706b3a11cb0986ba32818e162df3982283f6815eb9d67d7e91f909485d78f2b8d638da1934ffbc2f7f SHA512 eb0d47848d48f42a159ae5d7a4144483ba1f59f634844bd2053e48e04af30a30ba7056112cd38a1730d193a8d736b898f9608dd574cbe6829dbe7257a002772a -EBUILD opencascade-7.4.0-r2.ebuild 3778 BLAKE2B a672398e2cfcfdf64d597d0ff8f6c5cc737cf92baa49dc2d8bfe91f69291244c1ad116ba2cf09121676d6f37a8ae202acad7a87181425435a004635792882c27 SHA512 506d962f3393526f73f19631c9c5416968a84e717da5d949e906b42b200b91acbe3c18a810adcf94ed335c41733243a92ea5e4dcfd8010c6a7608ede7b172e68 +EBUILD opencascade-7.4.0-r3.ebuild 3874 BLAKE2B 08c690ed3ebef44cb620757cf3357d05a322696424d6038198ed9792d8fc647f7285d4a45e70981165a1f81961c02cd9c5fee6f0a17bfb6b88eea5ea4c4bdfe0 SHA512 d8e3d70a0b1affe0e2947470e1325d94d17d5ab678c83dff2c331339b39abe5607a90d236897766642c45efc59c302c6d448ac4869fc49e29c6b29755e2dc3ea MISC metadata.xml 887 BLAKE2B 1b9179667b3bb44f0b2c761f8dfed80f804c7313900087a2e61ce7a43ad140b7cb5a15ac0428d3ca0a7ba1087ac0f9014f0fa12d591a34b44a14edb90bfa57f5 SHA512 0d13482fbba741097d384878c333fbf4ed68bafbf4901dd296d1381953eee14112e03ec4bdeb817bdbba9ec5b0b2356d9eccc65cdebba4a47832446c263988f9 diff --git a/sci-libs/opencascade/opencascade-7.4.0-r2.ebuild b/sci-libs/opencascade/opencascade-7.4.0-r2.ebuild deleted file mode 100644 index 5abfadcc3ce5..000000000000 --- a/sci-libs/opencascade/opencascade-7.4.0-r2.ebuild +++ /dev/null @@ -1,145 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -# TODO: -# check the src files referenced in 51opencascade, i.e. resources and the like -# check where cmake gets it's '-s' linker flag to avoid pre-stripping (QA) - -EAPI=7 - -inherit check-reqs cmake flag-o-matic java-pkg-opt-2 - -DESCRIPTION="Development platform for CAD/CAE, 3D surface/solid modeling and data exchange" -HOMEPAGE="https://www.opencascade.com" -MY_PV="$(ver_rs 1- '_')" -SRC_URI="https://git.dev.opencascade.org/gitweb/?p=occt.git;a=snapshot;h=refs/tags/V${MY_PV};sf=tgz -> ${P}.tar.gz" - -LICENSE="|| ( Open-CASCADE-LGPL-2.1-Exception-1.0 LGPL-2.1 )" -SLOT="${PV}" -KEYWORDS="~amd64 ~x86" -# gl2ps -IUSE="debug doc examples ffmpeg freeimage gles2 inspector java optimize qt5 tbb +vtk" - -REQUIRED_USE=" - inspector? ( qt5 ) - ?? ( optimize tbb ) -" - -# gl2ps? ( x11-libs/gl2ps ) -RDEPEND=" - app-eselect/eselect-opencascade - dev-cpp/eigen - dev-lang/tcl:0= - dev-lang/tk:0= - dev-tcltk/itcl - dev-tcltk/itk - dev-tcltk/tix - media-libs/freetype:2 - media-libs/ftgl - virtual/glu - virtual/opengl - x11-libs/libXmu - ffmpeg? ( media-video/ffmpeg ) - freeimage? ( media-libs/freeimage ) - java? ( virtual/jdk:1.8 ) - qt5? ( - dev-qt/qtcore:5 - dev-qt/qtgui:5 - dev-qt/qtquickcontrols2:5 - dev-qt/qtwidgets:5 - dev-qt/qtxml:5 - ) - tbb? ( dev-cpp/tbb ) - vtk? ( >=sci-libs/vtk-8.1.0[rendering] ) -" -DEPEND="${RDEPEND}" -BDEPEND=" - doc? ( - app-doc/doxygen - qt5? ( dev-qt/linguist-tools:5 ) - ) -" - -# There's no easy way to test. Testing needs a rather big environment -# properly set up. -RESTRICT="test" - -CHECKREQS_MEMORY="256M" -CHECKREQS_DISK_BUILD="3584M" - -CMAKE_BUILD_TYPE=Release - -S="${WORKDIR}/occt-V${MY_PV}" - -PATCHES=( - "${FILESDIR}/${P}-find-qt.patch" - "${FILESDIR}/${P}-fix-install.patch" -) - -pkg_setup() { - check-reqs_pkg_setup - use java && java-pkg-opt-2_pkg_setup -} - -src_prepare() { - cmake_src_prepare - use java && java-pkg-opt-2_src_prepare -} - -src_configure() { - local mycmakeargs=( - -DBUILD_DOC_Overview=$(usex doc) - -DBUILD_Inspector=$(usex inspector) - -DBUILD_WITH_DEBUG=$(usex debug) - -DCMAKE_CONFIGURATION_TYPES="Gentoo" - -DCMAKE_INSTALL_PREFIX="/usr/$(get_libdir)/${P}/ros" - -DINSTALL_DIR_DOC="/usr/share/doc/${PF}" - -DINSTALL_DIR_CMAKE="/usr/$(get_libdir)/cmake" -# -DINSTALL_DOC_Overview=$(usex doc) - -DINSTALL_SAMPLES=$(usex examples) - -DINSTALL_TEST_CASES=NO - -DUSE_D3D=no - -DUSE_FFMPEG=$(usex ffmpeg) - -DUSE_FREEIMAGE=$(usex freeimage) -# -DUSE_GL2PS=$(usex gl2ps) - -DUSE_GLES2=$(usex gles2) - -DUSE_TBB=$(usex tbb) - -DUSE_VTK=$(usex vtk) - ) - - use examples && mycmakeargs+=( -DBUILD_SAMPLES_QT=$(usex qt5) ) - - cmake_src_configure - - # prepare /etc/env.d file - sed -e 's|VAR_CASROOT|'${EROOT%}'/usr/'$(get_libdir)'/'${P}'/ros|g' < "${FILESDIR}/${P}.env.in" >> "${T}/${PV}" || die - sed -i -e 's|ros/lib|ros/'$(get_libdir)'|' "${T}/${PV}" || die - - # use TBB for memory allocation optimizations? - use tbb && (sed -i -e 's|^#MMGT_OPT=0$|MMGT_OPT=2|' "${T}/${PV}" || die) - - if use optimize ; then - # use internal optimized memory manager? - sed -i -e 's|^#MMGT_OPT=0$|MMGT_OPT=1|' "${T}/${PV}" || die - # don't clear memory ? - sed -i -e 's|^#MMGT_CLEAR=1$|MMGT_CLEAR=0|' "${T}/${PV}" || die - fi -} - -src_install() { - cmake_src_install - - # respect slotting - insinto "/etc/env.d/${PN}" - doins "${T}/${PV}" - - # remove examples - use examples || (rm -rf "${ED}/usr/$(get_libdir)/${P}/ros/share/${PN}/samples" || die) - use java || (rm -rf "${ED}/usr/$(get_libdir)/${P}/ros/share/${PN}/samples/java" || die) - use qt5 || (rm -rf "${ED}/usr/$(get_libdir)/${P}/ros/share/${PN}/samples/qt" || die) -} - -pkg_postinst() { - eselect ${PN} set ${PV} || die "failed to switch to updated implementation" - einfo "You can switch between available ${PN} implementations using eselect ${PN}" -} diff --git a/sci-libs/opencascade/opencascade-7.4.0-r3.ebuild b/sci-libs/opencascade/opencascade-7.4.0-r3.ebuild new file mode 100644 index 000000000000..a6957289df15 --- /dev/null +++ b/sci-libs/opencascade/opencascade-7.4.0-r3.ebuild @@ -0,0 +1,147 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +# TODO: +# check the src files referenced in 51opencascade, i.e. resources and the like +# check where cmake gets it's '-s' linker flag to avoid pre-stripping (QA) + +EAPI=7 + +inherit check-reqs cmake flag-o-matic java-pkg-opt-2 + +DESCRIPTION="Development platform for CAD/CAE, 3D surface/solid modeling and data exchange" +HOMEPAGE="https://www.opencascade.com" +MY_PV="$(ver_rs 1- '_')" +SRC_URI="https://git.dev.opencascade.org/gitweb/?p=occt.git;a=snapshot;h=refs/tags/V${MY_PV};sf=tgz -> ${P}.tar.gz" + +LICENSE="|| ( Open-CASCADE-LGPL-2.1-Exception-1.0 LGPL-2.1 )" +SLOT="${PV}" +KEYWORDS="~amd64 ~x86" +# gl2ps +IUSE="debug doc examples ffmpeg freeimage gles2 inspector java optimize qt5 tbb +vtk" + +REQUIRED_USE=" + inspector? ( qt5 ) + ?? ( optimize tbb ) +" + +# gl2ps? ( x11-libs/gl2ps ) +RDEPEND=" + app-eselect/eselect-opencascade + dev-cpp/eigen + dev-lang/tcl:0= + dev-lang/tk:0= + dev-tcltk/itcl + dev-tcltk/itk + dev-tcltk/tix + media-libs/freetype:2 + media-libs/ftgl + virtual/glu + virtual/opengl + x11-libs/libXmu + ffmpeg? ( media-video/ffmpeg ) + freeimage? ( media-libs/freeimage ) + java? ( virtual/jdk:1.8 ) + qt5? ( + dev-qt/qtcore:5 + dev-qt/qtgui:5 + dev-qt/qtquickcontrols2:5 + dev-qt/qtwidgets:5 + dev-qt/qtxml:5 + ) + tbb? ( dev-cpp/tbb ) + vtk? ( >=sci-libs/vtk-8.1.0[rendering] ) +" +DEPEND="${RDEPEND}" +BDEPEND=" + doc? ( + app-doc/doxygen + qt5? ( dev-qt/linguist-tools:5 ) + ) +" + +# There's no easy way to test. Testing needs a rather big environment +# properly set up. +RESTRICT="test" + +CHECKREQS_MEMORY="256M" +CHECKREQS_DISK_BUILD="3584M" + +CMAKE_BUILD_TYPE=Release + +S="${WORKDIR}/occt-V${MY_PV}" + +PATCHES=( + "${FILESDIR}/${P}-find-qt.patch" + "${FILESDIR}/${P}-fix-install.patch" +) + +pkg_setup() { + check-reqs_pkg_setup + use java && java-pkg-opt-2_pkg_setup +} + +src_prepare() { + cmake_src_prepare + use java && java-pkg-opt-2_src_prepare + sed -e 's/\/lib\$/\/'$(get_libdir)'\$/' \ + -i adm/templates/OpenCASCADEConfig.cmake.in || die +} + +src_configure() { + local mycmakeargs=( + -DBUILD_DOC_Overview=$(usex doc) + -DBUILD_Inspector=$(usex inspector) + -DBUILD_WITH_DEBUG=$(usex debug) + -DCMAKE_CONFIGURATION_TYPES="Gentoo" + -DCMAKE_INSTALL_PREFIX="/usr/$(get_libdir)/${P}/ros" + -DINSTALL_DIR_DOC="/usr/share/doc/${PF}" + -DINSTALL_DIR_CMAKE="/usr/$(get_libdir)/cmake" +# -DINSTALL_DOC_Overview=$(usex doc) + -DINSTALL_SAMPLES=$(usex examples) + -DINSTALL_TEST_CASES=NO + -DUSE_D3D=no + -DUSE_FFMPEG=$(usex ffmpeg) + -DUSE_FREEIMAGE=$(usex freeimage) +# -DUSE_GL2PS=$(usex gl2ps) + -DUSE_GLES2=$(usex gles2) + -DUSE_TBB=$(usex tbb) + -DUSE_VTK=$(usex vtk) + ) + + use examples && mycmakeargs+=( -DBUILD_SAMPLES_QT=$(usex qt5) ) + + cmake_src_configure + + # prepare /etc/env.d file + sed -e 's|VAR_CASROOT|'${EROOT%}'/usr/'$(get_libdir)'/'${P}'/ros|g' < "${FILESDIR}/${P}.env.in" >> "${T}/${PV}" || die + sed -i -e 's|ros/lib|ros/'$(get_libdir)'|' "${T}/${PV}" || die + + # use TBB for memory allocation optimizations? + use tbb && (sed -i -e 's|^#MMGT_OPT=0$|MMGT_OPT=2|' "${T}/${PV}" || die) + + if use optimize ; then + # use internal optimized memory manager? + sed -i -e 's|^#MMGT_OPT=0$|MMGT_OPT=1|' "${T}/${PV}" || die + # don't clear memory ? + sed -i -e 's|^#MMGT_CLEAR=1$|MMGT_CLEAR=0|' "${T}/${PV}" || die + fi +} + +src_install() { + cmake_src_install + + # respect slotting + insinto "/etc/env.d/${PN}" + doins "${T}/${PV}" + + # remove examples + use examples || (rm -rf "${ED}/usr/$(get_libdir)/${P}/ros/share/${PN}/samples" || die) + use java || (rm -rf "${ED}/usr/$(get_libdir)/${P}/ros/share/${PN}/samples/java" || die) + use qt5 || (rm -rf "${ED}/usr/$(get_libdir)/${P}/ros/share/${PN}/samples/qt" || die) +} + +pkg_postinst() { + eselect ${PN} set ${PV} || die "failed to switch to updated implementation" + einfo "You can switch between available ${PN} implementations using eselect ${PN}" +} diff --git a/sci-libs/openlibm/Manifest b/sci-libs/openlibm/Manifest index 04ddb614ac99..8f611b5162d6 100644 --- a/sci-libs/openlibm/Manifest +++ b/sci-libs/openlibm/Manifest @@ -1,5 +1,6 @@ -DIST openlibm-0.5.4.tar.gz 353072 BLAKE2B 2427d207f3b45a5b2a80c3405a6a749c8d62409eea0adb31f26eda6a5dc370f242f5874a6783ada79972ac22183bb55448de683290f4c052967e2e598367f011 SHA512 ca74936b9eb7a52566cc509ffb98dd9e1672cd4029ba0193162505e53fe671b8903c37ef4036c15d0872ca246079a792d1630f3a93024010ff0c232f78295192 +AUX openlibm-0.7.2-make_inc.patch 1593 BLAKE2B 192e3c50401fe9c6a063c3cd80f8a13c9d4c1adc01d6ae4e6175787e1facf79e53d8d576cf7739690b737bfc7e6ede9e73deb60dc448c3d86d7dbf9e8c27c1c8 SHA512 f9529ab9439cf1010b8ec417476a1267a1317b7334271ac83bbaee3895a4ac577851de2a84c2778d9128b0d9d48c5867836f7a4f205da98af6b131fe78210fd4 DIST openlibm-0.7.0.tar.gz 366359 BLAKE2B 9dc545e3effedaadefda31ae75759ac8e5afb74250e8a7d9016b1406c235a298a375641207d3561365d750ec442e5ecdbfb1ce8b179a17bdaa48a5e2d5e5af25 SHA512 e52245ea93513fb1d9eade348f7c4ad4f1b500944024f7d52d71d43af908059e581ea77df6fc879414ff17c860263debec3aaf6ac86eea03ee1fe23d180487ed -EBUILD openlibm-0.5.4.ebuild 710 BLAKE2B f4d3155d69697bd7303cb4d92e455590c767fdc91f7e6b848dd8e5f7e62215b9acc1196c585524317a7aa51f37fca26c775c5ef6849db62c8308905c06b5e17d SHA512 b3a4226d579f610bfb28ad9c46d5fcd11870afdca0e1d6133f7e891530615b3dd974bd8cd9452e98cf6d9847c106b53e2b629a3c682ef318431cf4d046a25458 +DIST openlibm-0.7.2.tar.gz 366285 BLAKE2B 0086d026e53c337e20dc895dad38157308b16392f590c8a2c2f7699f2bb8bd5bd0d1931672c2d31a320af0a5ad1cc2e10f2eeb953f30382cfcae5aaac0adc478 SHA512 25e5c28ef898d905ff589d24efb87a99f3772d59596ad5660afc7cafbcd709bca167e863aadc84b90b930add036d285db1332faa9adf1b73562abf1185b9ee5c EBUILD openlibm-0.7.0.ebuild 711 BLAKE2B ea950f0d7ac74e99dd4decf0b7b27b2ad1e67fe31c7e159b8226a6eedd3821655aad2db71e0695ce4bccb2e0b3c4f033590f9a94d9606c3ab3497e4e2bfc8f1a SHA512 092836047064e721859e8a8197bfa8fea07533f11b9ac1429bb15c0ccb6832bb1341f547d7b04f3dec10de70dcbf0d42ad95f29f927b38900001483ab7bbf223 +EBUILD openlibm-0.7.2.ebuild 877 BLAKE2B a888b30dc5a5686ce38de477d76a60b9ca57604bb7758f7e807c6a1c6f4d765fb692856a0591325e7bd133ce6f9e49080f44ddc4c7b3bf6b0fe94041b157e58c SHA512 e9bbacc7a896e2c142e02a46025809b2abb1913938ea8602be8cc299a489775c8db8d173e78fc7d463e29e835f035d65b6708e2a7f05e6762b269619943f25ce MISC metadata.xml 770 BLAKE2B a75ed3c2d1a22ecb086b22d9ffad8c6d4ab002b7bb63acc60867a88a3126ad3feb1b1ea75ded8e798cd59d128236ab776a53131c6428aa422e1ffa31ee66e5d7 SHA512 c95d57f8ffc872aa8e0b4433d7b51bdb2c06f57c7ba00a66f7ecce06310db0343ff91081249154e2c1e32c9a90ed510704603c337530c1ee1acf36ce808b7b70 diff --git a/sci-libs/openlibm/files/openlibm-0.7.2-make_inc.patch b/sci-libs/openlibm/files/openlibm-0.7.2-make_inc.patch new file mode 100644 index 000000000000..dc42a98c68d5 --- /dev/null +++ b/sci-libs/openlibm/files/openlibm-0.7.2-make_inc.patch @@ -0,0 +1,81 @@ +diff --git a/Make.inc b/Make.inc +index adeb33d..36520f0 100644 +--- a/Make.inc ++++ b/Make.inc +@@ -10,41 +10,41 @@ VERSION = 0.7.0 + SOMAJOR = 3 + SOMINOR = 0 + DESTDIR = +-prefix = /usr/local +-bindir = $(prefix)/bin +-libdir = $(prefix)/lib +-includedir = $(prefix)/include ++prefix ?= /usr/local ++bindir ?= $(prefix)/bin ++libdir ?= $(prefix)/lib ++includedir ?= $(prefix)/include + + ifeq ($(OS), FreeBSD) +-pkgconfigdir = $(prefix)/libdata/pkgconfig ++pkgconfigdir ?= $(prefix)/libdata/pkgconfig + else +-pkgconfigdir = $(libdir)/pkgconfig ++pkgconfigdir ?= $(libdir)/pkgconfig + endif + +-USEGCC = 1 +-USECLANG = 0 ++USEGCC ?= 1 ++USECLANG ?= 0 + + ifneq (,$(findstring $(OS),Darwin FreeBSD OpenBSD)) +-USEGCC = 0 +-USECLANG = 1 ++USEGCC ?= 0 ++USECLANG ?= 1 + endif + + AR = $(TOOLPREFIX)ar + + ifeq ($(ARCH),wasm32) +-CC = clang-8 +-USEGCC = 0 ++CC ?= clang-8 ++USEGCC ?= 0 + CFLAGS_add += -fno-builtin -fno-strict-aliasing + endif + + ifeq ($(USECLANG),1) +-USEGCC = 0 +-CC = clang ++USEGCC ?= 0 ++CC ?= clang + CFLAGS_add += -fno-builtin -fno-strict-aliasing + endif + + ifeq ($(USEGCC),1) +-CC = $(TOOLPREFIX)gcc ++CC ?= $(TOOLPREFIX)gcc + CFLAGS_add += -fno-gnu89-inline -fno-builtin + endif + +@@ -84,9 +84,6 @@ override ARCH := mips + endif + + # If CFLAGS does not contain a -O optimization flag, default to -O3 +-ifeq ($(findstring -O,$(CFLAGS)),) +-CFLAGS_add += -O3 +-endif + + ifneq (,$(findstring MINGW,$(OS))) + override OS=WINNT +@@ -111,9 +111,6 @@ shlibdir = $(libdir) + endif + + # Add `-march` to our CFLAGS if it's defined +-ifneq ($(MARCH),) +-CFLAGS_arch += -march=$(MARCH) +-endif + + ifeq ($(ARCH),i387) + CFLAGS_arch += -m32 diff --git a/sci-libs/openlibm/openlibm-0.5.4.ebuild b/sci-libs/openlibm/openlibm-0.5.4.ebuild deleted file mode 100644 index 7dbbc695f242..000000000000 --- a/sci-libs/openlibm/openlibm-0.5.4.ebuild +++ /dev/null @@ -1,23 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit eutils toolchain-funcs fortran-2 - -DESCRIPTION="High quality system independent, open source libm" -HOMEPAGE="https://github.com/JuliaLang/openlibm" -SRC_URI="https://github.com/JuliaLang/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="public-domain MIT ISC BSD-2 LGPL-2.1+" -SLOT="0/${PV}.0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" - -IUSE="static-libs" - -src_install() { - emake DESTDIR="${D}" prefix="${EPREFIX}/usr" \ - libdir="${EPREFIX}/usr/$(get_libdir)" install - use static-libs || rm "${D}/${EPREFIX}/usr/$(get_libdir)/libopenlibm.a" || die "rm failed" - dodoc README.md -} diff --git a/sci-libs/openlibm/openlibm-0.7.2.ebuild b/sci-libs/openlibm/openlibm-0.7.2.ebuild new file mode 100644 index 000000000000..83cb64621d13 --- /dev/null +++ b/sci-libs/openlibm/openlibm-0.7.2.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs + +DESCRIPTION="High quality system independent, open source libm" +HOMEPAGE="https://github.com/JuliaLang/openlibm" +SRC_URI="https://github.com/JuliaMath/openlibm/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="public-domain MIT ISC BSD-2 LGPL-2.1+" +# See https://abi-laboratory.pro/index.php?view=timeline&l=openlibm +SLOT="0/3" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +PATCHES=( "${FILESDIR}"/${PN}-0.7.2-make_inc.patch ) + +src_prepare() { + default + sed -e "/^OLM_LIBS :=/s/^/#/" \ + -e "/install: /s/install-static//" \ + -i Makefile || die +} + +src_configure() { + tc-export CC CXX FC AR LD + default +} + +src_install() { + emake DESTDIR="${D}" prefix="${EPREFIX}/usr" \ + libdir="${EPREFIX}/usr/$(get_libdir)" install + dodoc README.md +} diff --git a/sci-libs/pastix/Manifest b/sci-libs/pastix/Manifest index 789370f68806..c6db3ae2a12d 100644 --- a/sci-libs/pastix/Manifest +++ b/sci-libs/pastix/Manifest @@ -2,6 +2,6 @@ AUX pastix-5.2.2.22-isnan-floating-point-cast.patch 1901 BLAKE2B 3bb02c4898367e0 AUX pastix-5.2.2.22-nosmp-undefined-variable.patch 494 BLAKE2B 06a9e3933d0a181f535ad2922c3b39375d50b81abc572a1363e5e1130e3647083940ffc929e40cf93d35e364eb7e36d84d57a53bd9fe247ff8f7fefde93a08f7 SHA512 c12719176b352b396cc58d7a4474955df0cb01459edce1b2f220c6352d99bf608d39c3b4d6b54b0ae8b4643879ed79b7a5fbd03b746dba0bf4cc265d81d6d38e DIST pastix_5.2.2.22.tar.bz2 2664470 BLAKE2B b1fbd12bf2c882aa8fd2c4891a6890df4bdc4488cedca2a7861e676ec5678063927f2e4a4edc47aa7ca0422b283f8f012aa1032af7212fe39f4c55e7f0f7adc4 SHA512 15ecdb10b5229e40f744c1ad54be7cac6560cb92e90df1937c90ca7da290df6bdb6f24a1e1c54197731b9df3e0dcc0b9fa39750479fcf03a0c08c304c5b9df70 DIST pastix_5.2.3.tar.bz2 2246903 BLAKE2B b13cb31bbc2aeb122e932b2a934598ec975a55f327483bf1383280976584858426c56982f6980b52f32f04e05c6e6c8de1cf35e378e61a7be9dddb705b1c033a SHA512 69acffac1be8c756886783c2a6307269ab4d14abfc4a77268b3d14995e53b16084c298446812484233d9d52c317490d6ad67788166adf367075e6c8442147b95 -EBUILD pastix-5.2.2.22-r1.ebuild 3654 BLAKE2B 011dc06c539590029f38e2f95555fb7a406660355cfbd17dbbeb98562b00491f6a094b35d04c1c0b2bcaaf20d488bb2734acaf4c0bde0f85ffb45c1bf725fe58 SHA512 0d9e03c2cc8cd5724607b70eac6e3ea687c1ef55a2a8f67e3ad894e379775b704051af7a8e0596e74d56a0b54852dcdedb66976535bb8c3e050beda1a7d81e96 +EBUILD pastix-5.2.2.22-r1.ebuild 3653 BLAKE2B 2fde445d7fa06f9c7f38fd61d23550df25a3c5b414eb309c7b2a5ebaac6ff844052e8cf612ba5d6e308c970e6d2d5d317b52a62365bec4fecd2e70614595fbf5 SHA512 884c7d5eec941cc2fc55597a62d674ec239a62ea3d66ec9811671b2841dcb0723937298abc9599011fc431bc8cf2c27aea9ea396936e78edccd4e8d4c19d57bb EBUILD pastix-5.2.3.ebuild 3337 BLAKE2B 1d89f156e99b6a5d1fafeccfabe22d49b81fccd4d34229326627d3236f711fb2cf03e4024904d8270e0340e15af5ea29df54cc09146f7b53877cfae53d908639 SHA512 53dc6e0f18dfb4ce263fcab1b8d88338dd6eebb4eabd204c45d9d04fbab6e32870a0b1fb19140977a35c49156955b67a1e58166c527c7b284dd831c4cbce6675 MISC metadata.xml 1055 BLAKE2B 237a5db431f2c60ea448c9627f943e88a7fd50509884af078c1de5b9ed51317806d815cf8f8ad9c1f85272077438df2d8c76e26fa9a1c9133bb17f3b1cd056ed SHA512 42f9f1f03c4a2df46918ef461d814ca3c0e80e0fa5420327a45d6ca7ec87dd3f14ad0e5a4384b49aebae971578a425b475fa0e1ed6b73370afb743222765bfde diff --git a/sci-libs/pastix/pastix-5.2.2.22-r1.ebuild b/sci-libs/pastix/pastix-5.2.2.22-r1.ebuild index 58b61bc3195d..4e3808900012 100644 --- a/sci-libs/pastix/pastix-5.2.2.22-r1.ebuild +++ b/sci-libs/pastix/pastix-5.2.2.22-r1.ebuild @@ -28,7 +28,7 @@ SRC_URI="https://gforge.inria.fr/frs/download.php/${PID}/${PN}_${PV}.tar.bz2" LICENSE="CeCILL-C" SLOT="0" -KEYWORDS="~alpha amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux" +KEYWORDS="~alpha amd64 ~arm ~ia64 ~ppc ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux" IUSE="doc int64 mpi +smp starpu static-libs" RDEPEND=" diff --git a/sci-libs/plotmm/Manifest b/sci-libs/plotmm/Manifest deleted file mode 100644 index 7072242efc6e..000000000000 --- a/sci-libs/plotmm/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -AUX plotmm-0.1.2-libsigc++-2.2.patch 4037 BLAKE2B 10024df20b90fab7ea8a212789b84a94689169ae3099788f52ba4b087eea9a64783adc81192598b7e79231edfa7744337694cf88cff079e2e4bd715de71ac66d SHA512 3327b7fcd0311976bbf1a6990e9cf14c43c85fb4eea2de21501bc79e90ee7bbec9527b35dab8204534f797e318659f0d67faefa047bb6ef2a8b0962588e2b4b2 -DIST plotmm-0.1.2.tar.gz 473175 BLAKE2B f024abbe77e208443cdf58a7817cdea9d1a93435b55e62d4579c341ca773fc2199def0e93fbba980891dd38c0085515e01833a11fd37f87bdeb0b2737a8ff809 SHA512 68484d7ed3b4d6520782735e05ad3cf9a5749f723285a2a3d0d1fabe3b23df57856d24addb31c23e3f23174655095f55b9b9a8d10316812d7a80fe13e204fab6 -EBUILD plotmm-0.1.2.ebuild 1317 BLAKE2B 02c078345a1fa555adb19e5902fe1fff81e11e360117ee838d09ce92a9d1ad15c3c34b469ef4ab1e1aa01ead694bf48c34c78cc4a203cf218e86e91ffb474551 SHA512 53193ebe4603964c025be2662673f23c7cc08746a3f6759a101534108ded4bf829ff4e5fc8c8914f6bae6baa4a7c296287c3fa6c86399b3cc78450bf277d71e1 -MISC metadata.xml 243 BLAKE2B 8495df4aecff8a0fba05bc70c2fe798eb257086ad1c16da9f1fa77a6100e7936d455febc72d73609063c034117400a64c19f9bacaaa7e9c41e0937efc041dfb3 SHA512 d9179f9fde1433951047043a7c811ea571511473d16c0c4e2b0655933dd41cc7b0b56edbf3db9ed25037086a676de73ea6886a6935a3c3dff67ad441eaa1304a diff --git a/sci-libs/plotmm/files/plotmm-0.1.2-libsigc++-2.2.patch b/sci-libs/plotmm/files/plotmm-0.1.2-libsigc++-2.2.patch deleted file mode 100644 index a9aa53190d5f..000000000000 --- a/sci-libs/plotmm/files/plotmm-0.1.2-libsigc++-2.2.patch +++ /dev/null @@ -1,100 +0,0 @@ -diff -ur plotmm-0.1.2-old/plotmm/compat.h plotmm-0.1.2/plotmm/compat.h ---- plotmm-0.1.2-old/plotmm/compat.h 2005-11-09 17:36:02.000000000 +0100 -+++ plotmm-0.1.2/plotmm/compat.h 2008-07-25 00:13:55.000000000 +0200 -@@ -58,7 +58,7 @@ - #else - - namespace PlotMM { -- typedef SigC::ObjectBase ObjectBase; -+ typedef sigc::ObjectBase ObjectBase; - } - - #endif -diff -ur plotmm-0.1.2-old/plotmm/curve.h plotmm-0.1.2/plotmm/curve.h ---- plotmm-0.1.2-old/plotmm/curve.h 2005-11-09 17:47:21.000000000 +0100 -+++ plotmm-0.1.2/plotmm/curve.h 2008-07-25 00:24:02.000000000 +0200 -@@ -140,7 +140,7 @@ - int from = 0, int to = -1); - - //! Signals that this curve has changed in some way or the other -- SigC::Signal0 signal_curve_changed; -+ sigc::signal0 signal_curve_changed; - - protected: - virtual void init(const Glib::ustring &title); -diff -ur plotmm-0.1.2-old/plotmm/plot.cc plotmm-0.1.2/plotmm/plot.cc ---- plotmm-0.1.2-old/plotmm/plot.cc 2005-11-09 17:59:48.000000000 +0100 -+++ plotmm-0.1.2/plotmm/plot.cc 2008-07-25 00:24:30.000000000 +0200 -@@ -322,7 +322,7 @@ - connect(sigc::mem_fun(*this,&Plot::on_canvas_expose_event)); - #else - canvas_.signal_expose_event(). -- connect(SigC::slot(*this,&Plot::on_canvas_expose_event)); -+ connect(sigc::slot(*this,&Plot::on_canvas_expose_event)); - #endif - - show_all(); -@@ -406,19 +406,19 @@ - } - - //! Return the signal owned by plot canvas --SigC::Signal3 Plot::signal_plot_mouse_press() -+sigc::signal3 Plot::signal_plot_mouse_press() - { - return canvas_.signal_plot_mouse_press; - } - - //! Return the signal owned by plot canvas --SigC::Signal3 Plot::signal_plot_mouse_release() -+sigc::signal3 Plot::signal_plot_mouse_release() - { - return canvas_.signal_plot_mouse_release; - } - - //! Return the signal owned by plot canvas --SigC::Signal3 Plot::signal_plot_mouse_move() -+sigc::signal3 Plot::signal_plot_mouse_move() - { - return canvas_.signal_plot_mouse_move; - } -diff -ur plotmm-0.1.2-old/plotmm/plot.h plotmm-0.1.2/plotmm/plot.h ---- plotmm-0.1.2-old/plotmm/plot.h 2004-03-09 10:51:55.000000000 +0100 -+++ plotmm-0.1.2/plotmm/plot.h 2008-07-25 00:25:17.000000000 +0200 -@@ -79,9 +79,9 @@ - virtual void clear(); - virtual void end_replot(); - -- SigC::Signal3 signal_plot_mouse_press; -- SigC::Signal3 signal_plot_mouse_release; -- SigC::Signal3 signal_plot_mouse_move; -+ sigc::signal3 signal_plot_mouse_press; -+ sigc::signal3 signal_plot_mouse_release; -+ sigc::signal3 signal_plot_mouse_move; - - protected: - virtual bool on_expose_event(GdkEventExpose* event); -@@ -141,9 +141,9 @@ - Scale *scale(PlotAxisID id) { return tickMark_[id]; } - PlotLabel *label(PlotAxisID id) { return axisLabel_[id]; } - -- SigC::Signal3 signal_plot_mouse_press(); -- SigC::Signal3 signal_plot_mouse_release(); -- SigC::Signal3 signal_plot_mouse_move(); -+ sigc::signal3 signal_plot_mouse_press(); -+ sigc::signal3 signal_plot_mouse_release(); -+ sigc::signal3 signal_plot_mouse_move(); - - void set_selection(const Rectangle &r); - Rectangle get_selection() { return select_; } -diff -ur plotmm-0.1.2-old/plotmm/scale.h plotmm-0.1.2/plotmm/scale.h ---- plotmm-0.1.2-old/plotmm/scale.h 2004-03-05 16:25:43.000000000 +0100 -+++ plotmm-0.1.2/plotmm/scale.h 2008-07-25 00:25:30.000000000 +0200 -@@ -133,7 +133,7 @@ - /*! This signal is thrown whenever the scale is enabled or disabled - * \sa set_enabled, enabled - */ -- SigC::Signal1 signal_enabled; -+ sigc::signal1 signal_enabled; - - protected: - virtual void on_realize(); diff --git a/sci-libs/plotmm/metadata.xml b/sci-libs/plotmm/metadata.xml deleted file mode 100644 index 6907b0a4da6b..000000000000 --- a/sci-libs/plotmm/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ - - - - - - plotmm - - diff --git a/sci-libs/plotmm/plotmm-0.1.2.ebuild b/sci-libs/plotmm/plotmm-0.1.2.ebuild deleted file mode 100644 index 5cf316ca2678..000000000000 --- a/sci-libs/plotmm/plotmm-0.1.2.ebuild +++ /dev/null @@ -1,58 +0,0 @@ -# Copyright 1999-2012 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -inherit eutils flag-o-matic - -DESCRIPTION="Plot widget for GTKmm" -HOMEPAGE="http://plotmm.sourceforge.net/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="amd64 ~ppc ~x86" -IUSE="doc examples" - -RDEPEND="dev-cpp/gtkmm:2.4" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -# NOTES: -# somewhat, there is a dep on libsigc++ but it's much more via gtkmm - -src_prepare() { - epatch "${FILESDIR}/${P}-libsigc++-2.2.patch" - - if ! use examples; then - sed -i -e "s:examples::" Makefile.in || die "sed failed" - fi -} - -src_configure() { - append-cxxflags -std=c++11 - econf \ - --disable-maintainer-mode \ - --enable-fast-install \ - --disable-libtool-lock -} - -src_install() { - default - - if use doc; then - dohtml -r doc/html/* - fi - - if use examples; then - # rename installed bin files - mv "${D}"/usr/bin/curves "${D}"/usr/bin/${PN}-curves || die "mv failed" - mv "${D}"/usr/bin/simple "${D}"/usr/bin/${PN}-simple || die "mv failed" - - # install sources - insinto /usr/share/doc/${PF}/examples/ - doins examples/{curves/curves,simple/simple}.cc - - elog "You can use examples by calling ${PN}-curves or ${PN}-simple." - elog "Examples source code is in /usr/share/doc/${PF}/examples." - fi -} diff --git a/sci-libs/pyshp/Manifest b/sci-libs/pyshp/Manifest index e5552b5236ea..6069248d35e8 100644 --- a/sci-libs/pyshp/Manifest +++ b/sci-libs/pyshp/Manifest @@ -1,3 +1,5 @@ DIST pyshp-2.1.0.tar.gz 215360 BLAKE2B 2b32a3db242b90f801abdbc31f3c930bc40c3ad0606433d90f62c6b9af3c0459e8c8467d60aec1075368779e5a4fffa9e3985e1875d82edf732faf982359c605 SHA512 ab0c7832f7e480ec3cdbf94ec29f84b590486625bde3d5cf465e5dc6ddca02998b99510b6c14d5ba005816c5b091044badc1e68988fd971f9e18266096ad86cb +DIST pyshp-2.1.2.tar.gz 217857 BLAKE2B f4c50e16987b13b7968fe37e4e7f20329b6871c879b837113aac281527f6a00d5d13e10f93e8ecd5896cf089d801d76cec5d93645a6919fbc48d96d4318bb767 SHA512 54fadaa133d3fbf3b9a318be02dd21c2a35a3c58c15de8e6d0cffa6ca83eefe12603fe5930d3df63ad4c6a6d711336752f08923c6406168207ac291d05592582 EBUILD pyshp-2.1.0.ebuild 549 BLAKE2B 34a54b03e748fae8daad52154dce55d32be41d1638242c183210007015945eba8acb5ba6a09c8d274334543e4ee8c939f669079555b748f7e8e8afff38612914 SHA512 7dfcab869adfc8aca9c706c2e63f9b80baa4f61efa59f0c10299644a7fccc9c867dee781e4c52914b8eeca6961ccf6b85793fd2ca1210e369689a477086041c0 +EBUILD pyshp-2.1.2.ebuild 549 BLAKE2B 34a54b03e748fae8daad52154dce55d32be41d1638242c183210007015945eba8acb5ba6a09c8d274334543e4ee8c939f669079555b748f7e8e8afff38612914 SHA512 7dfcab869adfc8aca9c706c2e63f9b80baa4f61efa59f0c10299644a7fccc9c867dee781e4c52914b8eeca6961ccf6b85793fd2ca1210e369689a477086041c0 MISC metadata.xml 327 BLAKE2B 48f3a2409f354b39c05d8111f78f1bce40425f79db30c83d345f81a081d2098bdf42dfc49e47854ec788cf75841cb9427a5c2eb9b71dd139f3fbe398e1380346 SHA512 3b9fdbf92fc5ad41b8afe4b315bad42806062c974b37496875fcc861af525905cc8d4b81e0a4d20d3e9333ea38c57c7aae6764c64537ef9e27386a53168299b4 diff --git a/sci-libs/pyshp/pyshp-2.1.2.ebuild b/sci-libs/pyshp/pyshp-2.1.2.ebuild new file mode 100644 index 000000000000..5499cd13c879 --- /dev/null +++ b/sci-libs/pyshp/pyshp-2.1.2.ebuild @@ -0,0 +1,25 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI="7" + +PYTHON_COMPAT=( python3_{6,7,8} ) +inherit distutils-r1 + +DESCRIPTION="Pure Python read/write support for ESRI Shapefile format" +HOMEPAGE="https://pypi.org/project/pyshp/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="test" +RESTRICT="!test? ( test )" + +RDEPEND="" +DEPEND="${RDEPEND} + dev-python/setuptools[${PYTHON_USEDEP}]" + +python_test() { + "${EPYTHON}" shapefile.py || die +} diff --git a/sci-libs/qrupdate/Manifest b/sci-libs/qrupdate/Manifest index 751cdf36a42b..378d36d0c46e 100644 --- a/sci-libs/qrupdate/Manifest +++ b/sci-libs/qrupdate/Manifest @@ -1,5 +1,5 @@ AUX qrupdate-1.1.1-Makefiles.patch 2350 BLAKE2B 9d1e21e0118f1fd47699c94e242fb53df5e6fa26b85a56bd13718ce409ade64e618a858fab780a2c927f4ef988273a883872d5ecca57b62b90b16f132dce5bae SHA512 40945650175668ab5155c330a5e6be20059e90d8bb5f47173d14b385710703693b1c5fb77bc01f08328e064301e2fc0c90438a9fac7f6f1222e6b35835137682 AUX qrupdate-1.1.2-install.patch 1263 BLAKE2B e9d18cda34264374e9456a2c3ed5f849bafe8ef461e1577e1cda4b04695f2c8ef03d0ef47d2d9ba6a56db7251b8a37cafc061a47b751e7947a94f1479df2a2d0 SHA512 3274d57666b2f453f50f0b5244c9f3dd5ea29a2fc05233dedfd43940945744a675d3bbd50e3a1aef7ec8613df16f97c05e0983c711db63364f8b45125e246bb8 DIST qrupdate-1.1.2.tar.gz 49734 BLAKE2B e5bf9fb39f6c97ee4b4084e664f929d95bee407f9f11ea4dc6da2bdb06d1694eddc1f2f52e5f673f22d097d11addb293b6dc0fd7c30d09acc84dd050fd1d72e9 SHA512 cc4e466ea91958e15c66be82b0c4c8ad813fbe4643f21259a9cb3ca8e0a411dd764bb2397ece848a7045f322d30316801d1540c4ebf7912030bef6995b44917c -EBUILD qrupdate-1.1.2-r1.ebuild 1271 BLAKE2B bf17b0d69dd27176bda4cc67401889c782f505efbb248be353f3a6260340594873b6cc56d423645607a83fb0b7a876107b32d98a02feaff95a1bf14b2b7a0712 SHA512 46088acf560b4de2a180daf5f9627f4b49fc66d8603154a3bad27f079aa79b5e6fdbd32f86662e27ef74e8e85da4d9bf7bb1f7c0b5a1c38696279f2a3a1bd6f5 +EBUILD qrupdate-1.1.2-r1.ebuild 1276 BLAKE2B 74e66218cb103c2231d08878399678854c6c2050886b3aaeabe874b32ecd5a05af0beb0b5e2de5988e63ca6e71c2bb3c29cc594de05adc846b888ac86df091bd SHA512 a7db85cf7c9788178e192fd03301663c36319b9a624977d868a8e170eba22f70919c56b2f21247c2d0781ed16759ba3e4760e2a50ef802c93351aa78400d7822 MISC metadata.xml 331 BLAKE2B 7cb0302f290048b91c8777184229fa2f0af2647f5cd1d4f9f88f7afc0168b4c51a4ab01b08cfb695be567838f1a6025cf47e2e43df67d434cf676c47c537cc3e SHA512 59818fe84d5fc4b73f29b45e14152e52d7d4afeaef9200e862e2414213b8c05bd63119befabc3a68b67b0aced7e60ab0fe3f7e657966a58a44d751571c4828df diff --git a/sci-libs/qrupdate/qrupdate-1.1.2-r1.ebuild b/sci-libs/qrupdate/qrupdate-1.1.2-r1.ebuild index 781d1d056c2f..bde3a5417097 100644 --- a/sci-libs/qrupdate/qrupdate-1.1.2-r1.ebuild +++ b/sci-libs/qrupdate/qrupdate-1.1.2-r1.ebuild @@ -11,7 +11,7 @@ SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" LICENSE="GPL-3" SLOT="0" -KEYWORDS="~alpha amd64 ~arm hppa ppc ppc64 sparc x86 ~amd64-linux ~ppc-macos" +KEYWORDS="~alpha amd64 arm arm64 hppa ppc ppc64 sparc x86 ~amd64-linux ~ppc-macos" IUSE="static-libs" RDEPEND="virtual/lapack" diff --git a/sci-libs/rtree/Manifest b/sci-libs/rtree/Manifest new file mode 100644 index 000000000000..e5468bb11ca9 --- /dev/null +++ b/sci-libs/rtree/Manifest @@ -0,0 +1,3 @@ +DIST Rtree-0.9.4.tar.gz 62017 BLAKE2B 72a979a3b9b9e9e1d18ea8646bbf860413c18420ce40946108c4f2f0e59fcb5bb64971a57936a92714e02e13419f7dc594b2371e4b44a4fd6a3e3986c19f7d85 SHA512 59981ffefedac1162faaa86ea10d7d5503da46c7ae9588a57e1a49214043de5f41bd4836965651d4cd22e7959c37cc6d586d9912568a2aaf693a0afb7895b429 +EBUILD rtree-0.9.4-r1.ebuild 633 BLAKE2B 6b0a78df3e79e41a23174ba873f306fcc43f7ceddc93dafd66ac27d8dc2541b374b5f0d5a83715f263d4cad375d2a82f07b6bba147a372ebd92f5f05b1efac12 SHA512 c2bb26c76f00e08e8745c02096916ca66321fb8e351d009382ac35c8abb434605e146db33ec324e5406b0c88408c962b0bea0281c5e775587a16fb0c490b9274 +MISC metadata.xml 701 BLAKE2B 1f89c6481c0856f2bd0ca2431151ecef5c01b015c443efcfb837be7cbe84ac218b3811e3710e678650916094ab9c8e0d18b2bb0a8beea10a7b6c73e7df23d646 SHA512 c145907e76558f657c5ca11540fc83ed3fe42917b496c4885b9826fdeb6253594f8656f9e663bbb519b47f3590ef0068f28e75f2a14248f7cc9508d7f8d7db81 diff --git a/sci-libs/rtree/metadata.xml b/sci-libs/rtree/metadata.xml new file mode 100644 index 000000000000..d03728e20d7e --- /dev/null +++ b/sci-libs/rtree/metadata.xml @@ -0,0 +1,17 @@ + + + + + 3dprint@gentoo.org + Gentoo 3D Printer Project + + + Rtree is a ctypes Python wrapper of libspatialindex that provides a number of advanced spatial indexing + features for the spatially curious Python user. + + + https://github.com/Toblerity/rtree/issues + Toblerity/rtree + Rtree + + diff --git a/sci-libs/rtree/rtree-0.9.4-r1.ebuild b/sci-libs/rtree/rtree-0.9.4-r1.ebuild new file mode 100644 index 000000000000..a0940fd1901a --- /dev/null +++ b/sci-libs/rtree/rtree-0.9.4-r1.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{7..8} ) +DISTUTILS_USE_SETUPTOOLS=rdepend + +inherit distutils-r1 + +MY_PN="Rtree" +MY_P="${MY_PN}-${PV}" + +DESCRIPTION="R-Tree spatial index for Python GIS" +HOMEPAGE="https://rtree.readthedocs.io/en/latest/" +SRC_URI="mirror://pypi/${MY_PN:0:1}/${MY_PN}/${MY_P}.tar.gz" +LICENSE="MIT" + +KEYWORDS="~amd64 ~x86" +SLOT="0" + +S=${WORKDIR}/${MY_P} + +RDEPEND="sci-libs/libspatialindex" + +distutils_enable_sphinx docs/source + +distutils_enable_tests pytest + +DEPEND+=" + test? ( dev-python/numpy[${PYTHON_USEDEP}] ) +" diff --git a/sci-libs/scikit-image/Manifest b/sci-libs/scikit-image/Manifest new file mode 100644 index 000000000000..9af2f6832b4c --- /dev/null +++ b/sci-libs/scikit-image/Manifest @@ -0,0 +1,5 @@ +DIST scikit-image-0.13.0.tar.gz 26101533 BLAKE2B c28284f64abd58c7bafa8f5f0c781496e8bb28af79c5c730df7cbf2fede958eb88ea420fd7f89e7b8d0d91719a98dd0935af3b2cc50fe501cc8d8d1d0ee56cb9 SHA512 923015e373c406ae2fbbfdf83ce8b91e83790bdf7842c4439fdc9fd58cffe46efc0cfc7a1b0b06e1b2d092a909a6f085335640850883e7608dbccd1074046550 +DIST scikit-image-0.17.2.tar.gz 29818001 BLAKE2B 360c5f8c23b8441d145029c09a3b1d1407d4103463497c63274583e6c03d1fc57baa3e6c53909cfaa5daba54d5909fc106e84dc7036f0240ad8de93804ef9f65 SHA512 3ca2511f03d533ac7f1850d72de396dc5493831bce6200f30d426c3f47eff9b25ec9b69e141100dc56e03f2310aab255f92ff4aff8bc7b80d15d669cbe2ebb5e +EBUILD scikit-image-0.13.0-r1.ebuild 1738 BLAKE2B abf1e5df1eff25fddc3df6adeb9c8a2b289f9f51a8093318e7f0d0bad8d178b358377663f5a40cc0544765ee52f173222ffe3a342e41f212c2a6516e895393bf SHA512 50efaa381c1093a0e9602a4330253f44f46c56a993a6371527ab07dc987ee25b33cb7266894a3be9548b2e76616bb196e3c6cdabf83c33279c3d2165c06b850b +EBUILD scikit-image-0.17.2.ebuild 1217 BLAKE2B ad8cee397fb0f4b3e906c08f63ef6b83b2932b0b77d230b3872ceae08a970e925a2eecd60e3d981656877210f22ec1dc65d0f66a638e034a9916dca7f7377a36 SHA512 3af9fcbdcd231564dc42df1feed4ef27d1e4064e4da0e9d6819c16895a6639b516a3939abb636097e14538d8a06fa27520f63aeab4883e3c5a72796e2eac40a2 +MISC metadata.xml 841 BLAKE2B d8e9c6247c250b668c91ef9341c9bd0c4d7a7c479530b02d2b05f2691a7d554e16cf744fd8e9fad919902a182a24bdcbf8aae890c58fccdbeb3a65116d7f9e5c SHA512 5e5ddb5f65b1e5b5a260af23bacc67775af9226fc97518d8146e05c922ae53e5863261a79382572920135e5ec70f1e5f083bbd7dadc9e9f899954baab67926da diff --git a/sci-libs/scikit-image/metadata.xml b/sci-libs/scikit-image/metadata.xml new file mode 100644 index 000000000000..aa3d4f7f7fb5 --- /dev/null +++ b/sci-libs/scikit-image/metadata.xml @@ -0,0 +1,21 @@ + + + + + sci@gentoo.org + Gentoo Science Project + + + This SciKit (toolkit for SciPy) includes useful image processing + algorithms for use with Python and NumPy. While SciPy’s ndimage + provides low-level manipulation, scikits.image centres around + algorithms and applications. + + + Enable support for image i/o viamedia-libs/freeimage + Enable support for algebraic solvers via dev-python/pyamg + + + scikit-image + + diff --git a/sci-libs/scikit-image/scikit-image-0.13.0-r1.ebuild b/sci-libs/scikit-image/scikit-image-0.13.0-r1.ebuild new file mode 100644 index 000000000000..0db4ea687ed1 --- /dev/null +++ b/sci-libs/scikit-image/scikit-image-0.13.0-r1.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6,7} ) + +inherit distutils-r1 optfeature virtualx + +DESCRIPTION="Image processing routines for SciPy" +HOMEPAGE="https://scikit-image.org/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc freeimage pyamg test" +RESTRICT="!test? ( test )" + +RDEPEND=" + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pillow[${PYTHON_USEDEP}] + dev-python/pywavelets[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + dev-python/scipy[sparse,${PYTHON_USEDEP}] + freeimage? ( media-libs/freeimage ) + pyamg? ( dev-python/pyamg[${PYTHON_USEDEP}] )" +DEPEND="${RDEPEND} + >=dev-python/cython-0.23[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + test? ( dev-python/nose[${PYTHON_USEDEP}] )" + +DOCS=( CONTRIBUTORS.txt DEPENDS.txt RELEASE.txt TASKS.txt TODO.txt ) + +python_test() { + distutils_install_for_testing + cd "${TEST_DIR}" || die "no ${TEST_DIR} available" + echo "backend : Agg" > matplotlibrc || die + #echo "backend.qt4 : PyQt4" >> matplotlibrc || die + #echo "backend.qt4 : PySide" >> matplotlibrc || die + MPLCONFIGDIR=. virtx nosetests --exe -v skimage +} + +pkg_postinst() { + optfeature "FITS io capability" dev-python/astropy + optfeature "GTK" dev-python/pygtk + optfeature "Parallel computation" dev-python/dask + # not in portage yet + #optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk + #optfeature "io plugin providing most standard formats" dev-python/imread +} diff --git a/sci-libs/scikit-image/scikit-image-0.17.2.ebuild b/sci-libs/scikit-image/scikit-image-0.17.2.ebuild new file mode 100644 index 000000000000..d88534989efb --- /dev/null +++ b/sci-libs/scikit-image/scikit-image-0.17.2.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6..9} ) +DISTUTILS_USE_SETUPTOOLS=rdepend +inherit distutils-r1 optfeature + +DESCRIPTION="Image processing routines for SciPy" +HOMEPAGE="https://scikit-image.org/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +RDEPEND=" + dev-python/imageio[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pillow[${PYTHON_USEDEP}] + dev-python/pywavelets[${PYTHON_USEDEP}] + dev-python/scipy[sparse,${PYTHON_USEDEP}] +" +DEPEND="${RDEPEND} + dev-python/cython[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] +" + +DOCS=( CONTRIBUTORS.txt RELEASE.txt ) + +pkg_postinst() { + optfeature "FITS io capability" dev-python/astropy + optfeature "GTK" dev-python/pygtk + optfeature "Parallel computation" dev-python/dask + optfeature "io plugin providing most standard formats" dev-python/imread + # not in portage yet + #optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk +} diff --git a/sci-libs/scikit-learn/Manifest b/sci-libs/scikit-learn/Manifest new file mode 100644 index 000000000000..49ca10603d7b --- /dev/null +++ b/sci-libs/scikit-learn/Manifest @@ -0,0 +1,5 @@ +DIST scikit-learn-0.22.2_p1.tar.gz 7034850 BLAKE2B 41c362ef6594e837a9fc798837e666fbb51e33954fdf700292650204fd9d1ab4fc4d1695890d02a24ad68f4dcc2d3cde8f0827eca70c6fb9a6f0e5c0d9c04fd5 SHA512 20bcda5c65f76bce9b71c5b5fb1b499f7f3a7a3f6fa5fade80a38dc658cb434e16e9d5a4906a9657157a5cc90a6d51080575d6e510207baa9f8b06c4fa761d5b +DIST scikit-learn-0.23.2.tar.gz 7190564 BLAKE2B db90e3d05d9b563c6cd98a6820c27b541e757e3fb6c25262b720842811b9e26d41a4a9c1d73e675714573d84dab799a0c450e768f4a41a39a6a61f6930c4c79a SHA512 e9797185b1b9def3ee5525e9b72742784aeb78fe8b069bb5aeab1d0f4513cf738c4489ed894274606dea9d6a32ccd3df26170ce1951e443dc77f9287c372e8c5 +EBUILD scikit-learn-0.22.2_p1-r1.ebuild 1638 BLAKE2B 9809ad980840ecc42fe8d231e0582e21492017365e1304abfd207911c3b664ade403b04ce262a6b91fb5614cc38aec87f67bf8e52cdb175aef26702311c78a62 SHA512 03c98713763c75af89c205705d96983bada41014d0f67c1b9176fbc118832222d96908ed5f88ffd89919341cecb993e7669141f8165021f73cfb271c91212fd3 +EBUILD scikit-learn-0.23.2.ebuild 1501 BLAKE2B af43692648b23fed1fb2fe41694db9769c5e14f71dcac69c3c02a982b0eb68be107410cc28c179898d74b073f11ce03bd37d6160cca43d70f44e37983d52f9e5 SHA512 e5e97a70d745e9d4fa1bef9bf79e22448a2aaa1861f0d607a0efa348dd2d75131c553f56f320700e9f67fc2b6431d131a712d3a2e61c2adcf45dbbe3385bfd2d +MISC metadata.xml 722 BLAKE2B 678b21d5cc514504a3dfef33f3066c55885285d85fc8a8582051b53a41675a8b9c589a0c226b838590e6bf1b740ce9d82840874f75049b92f7a681576bfeea78 SHA512 ac8ca303bd2df0f523496233edcec70ecf6cbe3fd863c4ac28ecd0250eed6b67135e39a74e93e6adcbbebac17766e4a8bcb9be2a73a2464400346f47afbfb440 diff --git a/sci-libs/scikit-learn/metadata.xml b/sci-libs/scikit-learn/metadata.xml new file mode 100644 index 000000000000..681e5c20b1f3 --- /dev/null +++ b/sci-libs/scikit-learn/metadata.xml @@ -0,0 +1,21 @@ + + + + + gentoo@aisha.cc + Aisha Tammy + + + sci@gentoo.org + Gentoo Science Project + + + sklearn is a python library for machine learning. It aims to + implement classic machine learning algorithms while remaining simple + and efficient. + + + scikit-learn + scikit-learn/scikit-learn + + diff --git a/sci-libs/scikit-learn/scikit-learn-0.22.2_p1-r1.ebuild b/sci-libs/scikit-learn/scikit-learn-0.22.2_p1-r1.ebuild new file mode 100644 index 000000000000..db552f4ee708 --- /dev/null +++ b/sci-libs/scikit-learn/scikit-learn-0.22.2_p1-r1.ebuild @@ -0,0 +1,71 @@ +# Copyright 2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6,7,8} ) +inherit distutils-r1 + +MY_PV="${PV//_p/.post}" + +DESCRIPTION="Machine learning library for Python" +HOMEPAGE="https://scikit-learn.org/stable/" +SRC_URI="https://github.com/scikit-learn/scikit-learn/archive/${MY_PV}.tar.gz -> ${P}.tar.gz" +#ffhttps://github.com/scikit-learn/scikit-learn/archive/0.22.2.post1.tar.gz +S="${WORKDIR}/${PN}-${MY_PV}" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="amd64 ~arm64 ~ppc64 x86" +IUSE="examples" + +RDEPEND=" + dev-python/wheel[${PYTHON_USEDEP}] + dev-python/cython[${PYTHON_USEDEP}] + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + virtual/blas:= + virtual/cblas:= +" +DEPEND=" + virtual/blas:= + virtual/cblas:= +" + +distutils_enable_tests pytest + +python_prepare_all() { + # scikits-learn now uses the horrible numpy.distutils automagic + export SCIPY_FCONFIG="config_fc --noopt --noarch" + + # remove bundled cblas + rm -rf sklearn/src || die "failed to remove bundled cblas" + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile ${SCIPY_FCONFIG} +} + +python_test() { + distutils_install_for_testing ${SCIPY_FCONFIG} + pushd "${TEST_DIR}/lib" >/dev/null || die + pytest -vv || die "testing failed with ${EPYTHON}" + popd >/dev/null || die +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} +} + +python_install_all() { + find "${S}" -name \*LICENSE.txt -delete + distutils-r1_python_install_all + if use examples; then + dodoc -r examples + docompress -x /usr/share/doc/${PF}/examples + fi + +} diff --git a/sci-libs/scikit-learn/scikit-learn-0.23.2.ebuild b/sci-libs/scikit-learn/scikit-learn-0.23.2.ebuild new file mode 100644 index 000000000000..626d84dd3335 --- /dev/null +++ b/sci-libs/scikit-learn/scikit-learn-0.23.2.ebuild @@ -0,0 +1,66 @@ +# Copyright 2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6..9} ) +DISTUTILS_USE_SETUPTOOLS=no +inherit distutils-r1 + +DESCRIPTION="Machine learning library for Python" +HOMEPAGE="https://scikit-learn.org/stable/" +SRC_URI="https://github.com/scikit-learn/scikit-learn/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~arm64 ~x86" +IUSE="examples" + +DEPEND=" + virtual/blas:= + virtual/cblas:= +" +RDEPEND=" + ${DEPEND} + dev-python/wheel[${PYTHON_USEDEP}] + dev-python/cython[${PYTHON_USEDEP}] + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + dev-python/threadpoolctl[${PYTHON_USEDEP}] +" + +distutils_enable_tests pytest + +python_prepare_all() { + # scikits-learn now uses the horrible numpy.distutils automagic + export SCIPY_FCONFIG="config_fc --noopt --noarch" + + # remove bundled cblas + rm -rf sklearn/src || die "failed to remove bundled cblas" + + distutils-r1_python_prepare_all +} + +python_compile() { + distutils-r1_python_compile ${SCIPY_FCONFIG} +} + +python_test() { + distutils_install_for_testing ${SCIPY_FCONFIG} + pushd "${TEST_DIR}/lib" >/dev/null || die + pytest -vv || die "testing failed with ${EPYTHON}" + popd >/dev/null || die +} + +python_install() { + distutils-r1_python_install ${SCIPY_FCONFIG} +} + +python_install_all() { + find "${S}" -name \*LICENSE.txt -delete + distutils-r1_python_install_all + if use examples; then + dodoc -r examples + fi +} diff --git a/sci-libs/scikit-optimize/Manifest b/sci-libs/scikit-optimize/Manifest new file mode 100644 index 000000000000..a37b6a57b5ae --- /dev/null +++ b/sci-libs/scikit-optimize/Manifest @@ -0,0 +1,3 @@ +DIST scikit-optimize-0.8.1.tar.gz 278751 BLAKE2B c53b921ed47a2146510a041e34129918cc1b9118e8ae3614f39cc16c87ba5a749e268b9694ade9d95132ec4fb11777f2ef2ec509b1be59c8864ff7b6edde2250 SHA512 8ffacb62869810e1812bdbd2f9f3fe83cad2be03cd795ae2e9aa4e1143ed613c3901ae06be85aecd63c1e3e5b4805e88331d2d8848cc9953988fddfbe62a0287 +EBUILD scikit-optimize-0.8.1.ebuild 638 BLAKE2B 6783889d12f564a883f93c957c6227cbb4a63db842c95ab8b9e075981f50f1428b127ae86e1e67139bbdc7d3cf6fdf0f785fbb1490b06df5d60653b82f11334f SHA512 388d437dad457fe6e23e7c5db18d80745271506089d65c9e2d3abe072dfe6283ad027a551f814d1b7b93bac89c9e66ac42769604f30b73a3d5ab784be25aa183 +MISC metadata.xml 525 BLAKE2B bd00fbf178b3d7faa54eedc8a0d39bbf2e38be82be836391a341674b418d4e9ccc3d99b5644fd6b1a2feb4637cf501523233d5bd86e05f9660545ec28756c180 SHA512 326647cfcdfebe6ef758ee7c5c51e27abbe1ed62c17c6466edd69952e6fad1990d03976453e6807a5e67acec25b5699af84052d4af9681d5454336bd8511ee11 diff --git a/sci-libs/scikit-optimize/metadata.xml b/sci-libs/scikit-optimize/metadata.xml new file mode 100644 index 000000000000..11fe5dcb02d1 --- /dev/null +++ b/sci-libs/scikit-optimize/metadata.xml @@ -0,0 +1,16 @@ + + + + + gentoo@aisha.cc + Aisha Tammy + + + sci@gentoo.org + Gentoo Science Project + + + scikit-optimize + scikit-optimize/scikit-optimize + + diff --git a/sci-libs/scikit-optimize/scikit-optimize-0.8.1.ebuild b/sci-libs/scikit-optimize/scikit-optimize-0.8.1.ebuild new file mode 100644 index 000000000000..c2d8bbb2631f --- /dev/null +++ b/sci-libs/scikit-optimize/scikit-optimize-0.8.1.ebuild @@ -0,0 +1,26 @@ +# Copyright 2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6..9} ) +inherit distutils-r1 + +DESCRIPTION="Sequential model-based optimization library" +HOMEPAGE="https://scikit-optimize.github.io/" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64" + +RDEPEND=" + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pretty-yaml[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + sci-libs/scikit-learn[${PYTHON_USEDEP}] +" + +distutils_enable_tests pytest diff --git a/sci-libs/scikits_image/Manifest b/sci-libs/scikits_image/Manifest deleted file mode 100644 index 501062ae8314..000000000000 --- a/sci-libs/scikits_image/Manifest +++ /dev/null @@ -1,3 +0,0 @@ -DIST scikit-image-0.13.0.tar.gz 26101533 BLAKE2B c28284f64abd58c7bafa8f5f0c781496e8bb28af79c5c730df7cbf2fede958eb88ea420fd7f89e7b8d0d91719a98dd0935af3b2cc50fe501cc8d8d1d0ee56cb9 SHA512 923015e373c406ae2fbbfdf83ce8b91e83790bdf7842c4439fdc9fd58cffe46efc0cfc7a1b0b06e1b2d092a909a6f085335640850883e7608dbccd1074046550 -EBUILD scikits_image-0.13.0-r1.ebuild 1816 BLAKE2B d0c8f32aa0f8e561567c605856c22125c408a722c1c953196234ef26ec7e77c9e203df29b052a98f176b7c4e17ec6cb9598fbc3205dd9f620d25d625ad73ca11 SHA512 a5ebd9e3edab500f6f45703a91c2c5f3ddc14416648a3765c0cd13cd0ccb9fa7624c34ebdb68625bc3238303059c814c0d7fafe0c675ff631a8e127f093ba45b -MISC metadata.xml 834 BLAKE2B d6ed9731e0bfffb39fb127b1ccaa9d449e7cedc4038a5a4a915624fadad131d39df0d1d7123951539074758095d35c1b9730bb4a3da2278b02630903645eb769 SHA512 1c615479bc22c8c66b4f7a2189e38c69f9b8722f051c68473439069ef89598f0505dbd94fe06cbe56a07e41a1a6552f4d8d666703676ef9a165dbcf462e09e40 diff --git a/sci-libs/scikits_image/metadata.xml b/sci-libs/scikits_image/metadata.xml deleted file mode 100644 index 8e05ce3947d6..000000000000 --- a/sci-libs/scikits_image/metadata.xml +++ /dev/null @@ -1,22 +0,0 @@ - - - - - sci@gentoo.org - Gentoo Science Project - - - This SciKit (toolkit for SciPy) includes useful image processing - algorithms for use with Python and NumPy. While SciPy’s ndimage - provides low-level manipulation, scikits.image centres around - algorithms and applications. - - - Enable support for image i/o via - media-libs/freeimage - Enable support for algebraic solvers via dev-python/pyamg - - - scikit-image - - diff --git a/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild b/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild deleted file mode 100644 index 6764d75ad7cf..000000000000 --- a/sci-libs/scikits_image/scikits_image-0.13.0-r1.ebuild +++ /dev/null @@ -1,58 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{6,7} ) - -inherit distutils-r1 optfeature virtualx - -MYPN="${PN/scikits_/scikit-}" -MYP="${MYPN}-${PV}" - -DESCRIPTION="Image processing routines for SciPy" -HOMEPAGE="https://scikit-image.org/" -SRC_URI="mirror://pypi/${PN:0:1}/${MYPN}/${MYP}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc freeimage pyamg test" -RESTRICT="!test? ( test )" - -RDEPEND=" - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/networkx[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/pillow[${PYTHON_USEDEP}] - dev-python/pywavelets[${PYTHON_USEDEP}] - dev-python/six[${PYTHON_USEDEP}] - dev-python/scipy[sparse,${PYTHON_USEDEP}] - freeimage? ( media-libs/freeimage ) - pyamg? ( dev-python/pyamg[${PYTHON_USEDEP}] )" -DEPEND="${RDEPEND} - >=dev-python/cython-0.23[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - test? ( dev-python/nose[${PYTHON_USEDEP}] )" - -S="${WORKDIR}/${MYP}" - -DOCS=( CONTRIBUTORS.txt DEPENDS.txt RELEASE.txt TASKS.txt TODO.txt ) - -python_test() { - distutils_install_for_testing - cd "${TEST_DIR}" || die "no ${TEST_DIR} available" - echo "backend : Agg" > matplotlibrc || die - #echo "backend.qt4 : PyQt4" >> matplotlibrc || die - #echo "backend.qt4 : PySide" >> matplotlibrc || die - MPLCONFIGDIR=. virtx nosetests --exe -v skimage -} - -pkg_postinst() { - optfeature "FITS io capability" dev-python/astropy - optfeature "GTK" dev-python/pygtk - optfeature "Parallel computation" dev-python/dask - # not in portage yet - #optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk - #optfeature "io plugin providing most standard formats" dev-python/imread -} diff --git a/sci-libs/scikits_learn/Manifest b/sci-libs/scikits_learn/Manifest deleted file mode 100644 index ecff55c949f6..000000000000 --- a/sci-libs/scikits_learn/Manifest +++ /dev/null @@ -1,11 +0,0 @@ -AUX scikits_learn-0.18.1-system-cblas.patch 1366 BLAKE2B 8678695de19e8c56b1a0f98193da79c69d32a81f1c419d0c594afe7865d5469312d7f9799ae0ccca307d2acbdc9f1a8641b446a7cb6b263a81c4b50ff260c1d4 SHA512 be8527fa924502453a9f43af5b3553db50f97b4b1f1ee14fcb2699319e77e3d0d3c19bf82bd66357c6464011dcb819e3625a83360923d322f5d340568a72cbf6 -AUX scikits_learn-0.20.2-fix-cdfast.patch 3401 BLAKE2B cb75c941c2d7a81cde7fe07dc46107730bed0323ce07030f3401138234816c9edc53aff18973545f66a5ed6c54ab11b7dd2a04faf7d106dd046d54c84533c697 SHA512 56ef8a8e66138df5b2899e38d04c9d1303882103fa3c16c31c592a42a22c2111ab490caa0cd6d83332b21184f9c88b13e735cf5317f4f58d7e1c0356a74e0114 -DIST scikit-learn-0.19.0.tar.gz 9341628 BLAKE2B c9e0c12558e81efb6f5cfddead028980b0019d2f6d0fdce5662c9138ec3a5b2a3d30b022a5713578bc7effd09894006e8f7f60a3e038ca66297502d9d4212686 SHA512 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a/sci-libs/scikits_learn/files/scikits_learn-0.18.1-system-cblas.patch +++ /dev/null @@ -1,32 +0,0 @@ -Index: scikit-learn-0.18.1/sklearn/_build_utils/__init__.py -=================================================================== ---- scikit-learn-0.18.1.orig/sklearn/_build_utils/__init__.py -+++ scikit-learn-0.18.1/sklearn/_build_utils/__init__.py -@@ -31,7 +31,7 @@ def get_blas_info(): - return False - - blas_info = get_info('blas_opt', 0) -- if (not blas_info) or atlas_not_found(blas_info): -+ if (not blas_info): - cblas_libs = ['cblas'] - blas_info.pop('libraries', None) - else: -Index: scikit-learn-0.18.1/sklearn/setup.py -=================================================================== ---- scikit-learn-0.18.1.orig/sklearn/setup.py -+++ scikit-learn-0.18.1/sklearn/setup.py -@@ -63,14 +63,6 @@ def configuration(parent_package='', top - libraries=libraries, - ) - -- # some libs needs cblas, fortran-compiled BLAS will not be sufficient -- blas_info = get_info('blas_opt', 0) -- if (not blas_info) or ( -- ('NO_ATLAS_INFO', 1) in blas_info.get('define_macros', [])): -- config.add_library('cblas', -- sources=[join('src', 'cblas', '*.c')]) -- warnings.warn(BlasNotFoundError.__doc__) -- - # the following packages depend on cblas, so they have to be build - # after the above. - config.add_subpackage('linear_model') diff --git a/sci-libs/scikits_learn/files/scikits_learn-0.20.2-fix-cdfast.patch b/sci-libs/scikits_learn/files/scikits_learn-0.20.2-fix-cdfast.patch deleted file mode 100644 index 1d1de4a3e0e5..000000000000 --- a/sci-libs/scikits_learn/files/scikits_learn-0.20.2-fix-cdfast.patch +++ /dev/null @@ -1,42 +0,0 @@ ---- scikit-learn-0.20.3.orig/sklearn/linear_model/cd_fast.c 2019-08-09 03:05:05.351926119 +0500 -+++ scikit-learn-0.20.3/sklearn/linear_model/cd_fast.c 2019-08-09 03:05:35.022926006 +0500 -@@ -4889,7 +4889,7 @@ - - static PyObject *__pyx_pf_7sklearn_12linear_model_7cd_fast_8enet_coordinate_descent(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_w, float __pyx_v_alpha, float __pyx_v_beta, __Pyx_memviewslice __pyx_v_X, __Pyx_memviewslice __pyx_v_y, int __pyx_v_max_iter, float __pyx_v_tol, PyObject *__pyx_v_rng, int __pyx_v_random, int __pyx_v_positive) { - PyObject *__pyx_v_dtype = NULL; -- void (*__pyx_v_gemv)(enum CBLAS_ORDER, enum CBLAS_TRANSPOSE, int, int, float, float *, int, float *, int, float, float *, int); -+ void (*__pyx_v_gemv)(CBLAS_ORDER, CBLAS_TRANSPOSE, int, int, float, float *, int, float *, int, float, float *, int); - float (*__pyx_v_dot)(int, float *, int, float *, int); - void (*__pyx_v_axpy)(int, float, float *, int, float *, int); - float (*__pyx_v_asum)(int, float *, int); -@@ -6279,7 +6279,7 @@ - - static PyObject *__pyx_pf_7sklearn_12linear_model_7cd_fast_10enet_coordinate_descent(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_w, double __pyx_v_alpha, double __pyx_v_beta, __Pyx_memviewslice __pyx_v_X, __Pyx_memviewslice __pyx_v_y, int __pyx_v_max_iter, double __pyx_v_tol, PyObject *__pyx_v_rng, int __pyx_v_random, int __pyx_v_positive) { - PyObject *__pyx_v_dtype = NULL; -- void (*__pyx_v_gemv)(enum CBLAS_ORDER, enum CBLAS_TRANSPOSE, int, int, double, double *, int, double *, int, double, double *, int); -+ void (*__pyx_v_gemv)(CBLAS_ORDER, CBLAS_TRANSPOSE, int, int, double, double *, int, double *, int, double, double *, int); - double (*__pyx_v_dot)(int, double *, int, double *, int); - void (*__pyx_v_axpy)(int, double, double *, int, double *, int); - double (*__pyx_v_asum)(int, double *, int); -@@ -16246,8 +16246,8 @@ - CYTHON_UNUSED float (*__pyx_v_asum)(int, float *, int); - void (*__pyx_v_copy)(int, float *, int, float *, int); - void (*__pyx_v_scal)(int, float, float *, int); -- void (*__pyx_v_ger)(enum CBLAS_ORDER, int, int, float, float *, int, float *, int, float *, int); -- void (*__pyx_v_gemv)(enum CBLAS_ORDER, enum CBLAS_TRANSPOSE, int, int, float, float *, int, float *, int, float, float *, int); -+ void (*__pyx_v_ger)(CBLAS_ORDER, int, int, float, float *, int, float *, int, float *, int); -+ void (*__pyx_v_gemv)(CBLAS_ORDER, CBLAS_TRANSPOSE, int, int, float, float *, int, float *, int, float, float *, int); - unsigned int __pyx_v_n_samples; - unsigned int __pyx_v_n_features; - unsigned int __pyx_v_n_tasks; -@@ -17965,8 +17965,8 @@ - CYTHON_UNUSED double (*__pyx_v_asum)(int, double *, int); - void (*__pyx_v_copy)(int, double *, int, double *, int); - void (*__pyx_v_scal)(int, double, double *, int); -- void (*__pyx_v_ger)(enum CBLAS_ORDER, int, int, double, double *, int, double *, int, double *, int); -- void (*__pyx_v_gemv)(enum CBLAS_ORDER, enum CBLAS_TRANSPOSE, int, int, double, double *, int, double *, int, double, double *, int); -+ void (*__pyx_v_ger)(CBLAS_ORDER, int, int, double, double *, int, double *, int, double *, int); -+ void (*__pyx_v_gemv)(CBLAS_ORDER, CBLAS_TRANSPOSE, int, int, double, double *, int, double *, int, double, double *, int); - unsigned int __pyx_v_n_samples; - unsigned int __pyx_v_n_features; - unsigned int __pyx_v_n_tasks; diff --git a/sci-libs/scikits_learn/metadata.xml b/sci-libs/scikits_learn/metadata.xml deleted file mode 100644 index 0f62a4aec772..000000000000 --- a/sci-libs/scikits_learn/metadata.xml +++ /dev/null @@ -1,17 +0,0 @@ - - - - - sci@gentoo.org - Gentoo Science Project - - - scikits.learn is a python library for machine learning. It aims to - implement classic machine learning algorithms while remaining simple - and efficient. - - - scikit-learn - scikit-learn - - diff --git a/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild deleted file mode 100644 index 87abf6b9c1e3..000000000000 --- a/sci-libs/scikits_learn/scikits_learn-0.19.0-r1.ebuild +++ /dev/null @@ -1,107 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{6,7} ) - -inherit distutils-r1 flag-o-matic - -MYPN="${PN/scikits_/scikit-}" -MYP="${MYPN}-${PV}" - -DESCRIPTION="Python modules for machine learning and data mining" -HOMEPAGE="https://scikit-learn.org" -SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="examples test" -RESTRICT="!test? ( test )" - -# tried to unbundle virtual/python-funcsigs, funcsigs, odict -# but it is a large mess to maintain - -RDEPEND=" - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/nose[${PYTHON_USEDEP}] - dev-python/numpy[lapack,${PYTHON_USEDEP}] - sci-libs/scikits[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - virtual/blas:= - virtual/cblas:= -" - -DEPEND=" - dev-python/cython[${PYTHON_USEDEP}] - dev-python/numpy[lapack,${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - virtual/blas:= - virtual/cblas:= -" - -S="${WORKDIR}/${MYP}" - -PATCHES=( "${FILESDIR}"/${PN}-0.18.1-system-cblas.patch ) - -python_prepare_all() { - # bug #397605 - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - - # scikits-learn now uses the horrible numpy.distutils automagic - export SCIPY_FCONFIG="config_fc --noopt --noarch" - - # remove bundled cblas - rm -r sklearn/src || die - - # commented out, since it is a mess to maintain - # use system joblib - #rm -r sklearn/externals/joblib || die - #sed -i -e '/joblib/d' sklearn/externals/setup.py || die - #for f in sklearn/{*/,}*.py; do - # sed -r -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ - # -e 's/from (sklearn|\.|)\.externals import/import/' -i $f || die - #done - - # use system funcsigs and odict - #rm sklearn/externals/funcsigs.py || die - #rm sklearn/externals/odict.py || die - #for f in sklearn/{utils/fixes.py,gaussian_process/{tests/test_,}kernels.py}; do - # sed -r -e 's/from (sklearn|\.|)\.externals\.funcsigs/from funcsigs/' -i $f || die - #done - distutils-r1_python_prepare_all -} - -python_compile() { - distutils-r1_python_compile ${SCIPY_FCONFIG} -} - -python_test() { - # doc builds and runs tests - use doc && return - distutils_install_for_testing ${SCIPY_FCONFIG} - esetup.py install \ - --root="${T}/test-${EPYTHON}" \ - --no-compile ${SCIPY_FCONFIG} - pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null - JOBLIB_MULTIPROCESSING=2 SKLEARN_SKIP_NETWORK_TESTS=1 nosetests -v sklearn --exe || die - popd > /dev/null -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} -} - -python_install_all() { - find "${S}" -name \*LICENSE.txt -delete - distutils-r1_python_install_all - if use examples; then - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples - fi - -} diff --git a/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild b/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild deleted file mode 100644 index 728231683290..000000000000 --- a/sci-libs/scikits_learn/scikits_learn-0.20.2.ebuild +++ /dev/null @@ -1,109 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_6 ) - -inherit distutils-r1 flag-o-matic - -MYPN="${PN/scikits_/scikit-}" -MYP="${MYPN}-${PV}" - -DESCRIPTION="Python modules for machine learning and data mining" -HOMEPAGE="https://scikit-learn.org" -SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="examples test" - -RESTRICT="!test? ( test )" - -# tried to unbundle virtual/python-funcsigs, funcsigs, odict -# but it is a large mess to maintain - -RDEPEND=" - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/nose[${PYTHON_USEDEP}] - dev-python/numpy[lapack,${PYTHON_USEDEP}] - sci-libs/scikits[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - virtual/blas:= - virtual/cblas:= -" - -DEPEND=" - dev-python/cython[${PYTHON_USEDEP}] - dev-python/numpy[lapack,${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - virtual/blas:= - virtual/cblas:= -" - -S="${WORKDIR}/${MYP}" - -PATCHES=( "${FILESDIR}"/${PN}-0.18.1-system-cblas.patch - "${FILESDIR}"/${PN}-0.20.2-fix-cdfast.patch ) - -python_prepare_all() { - # bug #397605 - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - - # scikits-learn now uses the horrible numpy.distutils automagic - export SCIPY_FCONFIG="config_fc --noopt --noarch" - - # remove bundled cblas - rm -rf sklearn/src || die "failed to remove bundled cblas" - - # commented out, since it is a mess to maintain - # use system joblib - #rm -r sklearn/externals/joblib || die - #sed -i -e '/joblib/d' sklearn/externals/setup.py || die - #for f in sklearn/{*/,}*.py; do - # sed -r -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ - # -e 's/from (sklearn|\.|)\.externals import/import/' -i $f || die - #done - - # use system funcsigs and odict - #rm sklearn/externals/funcsigs.py || die - #rm sklearn/externals/odict.py || die - #for f in sklearn/{utils/fixes.py,gaussian_process/{tests/test_,}kernels.py}; do - # sed -r -e 's/from (sklearn|\.|)\.externals\.funcsigs/from funcsigs/' -i $f || die - #done - distutils-r1_python_prepare_all -} - -python_compile() { - distutils-r1_python_compile ${SCIPY_FCONFIG} -} - -python_test() { - # doc builds and runs tests - use doc && return - distutils_install_for_testing ${SCIPY_FCONFIG} - esetup.py install \ - --root="${T}/test-${EPYTHON}" \ - --no-compile ${SCIPY_FCONFIG} - pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null - JOBLIB_MULTIPROCESSING=2 SKLEARN_SKIP_NETWORK_TESTS=1 nosetests -v sklearn --exe || die - popd > /dev/null -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} -} - -python_install_all() { - find "${S}" -name \*LICENSE.txt -delete - distutils-r1_python_install_all - if use examples; then - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples - fi - -} diff --git a/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild b/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild deleted file mode 100644 index 728231683290..000000000000 --- a/sci-libs/scikits_learn/scikits_learn-0.20.4.ebuild +++ /dev/null @@ -1,109 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_6 ) - -inherit distutils-r1 flag-o-matic - -MYPN="${PN/scikits_/scikit-}" -MYP="${MYPN}-${PV}" - -DESCRIPTION="Python modules for machine learning and data mining" -HOMEPAGE="https://scikit-learn.org" -SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="examples test" - -RESTRICT="!test? ( test )" - -# tried to unbundle virtual/python-funcsigs, funcsigs, odict -# but it is a large mess to maintain - -RDEPEND=" - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/nose[${PYTHON_USEDEP}] - dev-python/numpy[lapack,${PYTHON_USEDEP}] - sci-libs/scikits[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - virtual/blas:= - virtual/cblas:= -" - -DEPEND=" - dev-python/cython[${PYTHON_USEDEP}] - dev-python/numpy[lapack,${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - virtual/blas:= - virtual/cblas:= -" - -S="${WORKDIR}/${MYP}" - -PATCHES=( "${FILESDIR}"/${PN}-0.18.1-system-cblas.patch - "${FILESDIR}"/${PN}-0.20.2-fix-cdfast.patch ) - -python_prepare_all() { - # bug #397605 - [[ ${CHOST} == *-darwin* ]] \ - && append-ldflags -bundle "-undefined dynamic_lookup" \ - || append-ldflags -shared - - # scikits-learn now uses the horrible numpy.distutils automagic - export SCIPY_FCONFIG="config_fc --noopt --noarch" - - # remove bundled cblas - rm -rf sklearn/src || die "failed to remove bundled cblas" - - # commented out, since it is a mess to maintain - # use system joblib - #rm -r sklearn/externals/joblib || die - #sed -i -e '/joblib/d' sklearn/externals/setup.py || die - #for f in sklearn/{*/,}*.py; do - # sed -r -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ - # -e 's/from (sklearn|\.|)\.externals import/import/' -i $f || die - #done - - # use system funcsigs and odict - #rm sklearn/externals/funcsigs.py || die - #rm sklearn/externals/odict.py || die - #for f in sklearn/{utils/fixes.py,gaussian_process/{tests/test_,}kernels.py}; do - # sed -r -e 's/from (sklearn|\.|)\.externals\.funcsigs/from funcsigs/' -i $f || die - #done - distutils-r1_python_prepare_all -} - -python_compile() { - distutils-r1_python_compile ${SCIPY_FCONFIG} -} - -python_test() { - # doc builds and runs tests - use doc && return - distutils_install_for_testing ${SCIPY_FCONFIG} - esetup.py install \ - --root="${T}/test-${EPYTHON}" \ - --no-compile ${SCIPY_FCONFIG} - pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null - JOBLIB_MULTIPROCESSING=2 SKLEARN_SKIP_NETWORK_TESTS=1 nosetests -v sklearn --exe || die - popd > /dev/null -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} -} - -python_install_all() { - find "${S}" -name \*LICENSE.txt -delete - distutils-r1_python_install_all - if use examples; then - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples - fi - -} diff --git a/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild b/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild deleted file mode 100644 index b60be666ce0d..000000000000 --- a/sci-libs/scikits_learn/scikits_learn-0.22.2_p1.ebuild +++ /dev/null @@ -1,79 +0,0 @@ -# Copyright 2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python3_{6,7,8} ) -inherit distutils-r1 - -MY_PV="${PV//_p/.post}" -MY_PN="${PN//s_/-}" - -DESCRIPTION="Machine learning library for Python" -HOMEPAGE="https://scikit-learn.org/stable/ - https://github.com/scikit-learn/scikit-learn" -SRC_URI="https://github.com/${MY_PN}/${MY_PN}/archive/${MY_PV}.tar.gz -> ${P}.tar.gz" -#ffhttps://github.com/scikit-learn/scikit-learn/archive/0.22.2.post1.tar.gz -S="${WORKDIR}/${MY_PN}-${MY_PV}" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="amd64 ~arm64 ~ppc64 x86" -IUSE="examples" - -RDEPEND=" - dev-python/wheel[${PYTHON_USEDEP}] - dev-python/cython[${PYTHON_USEDEP}] - dev-python/numpy[${PYTHON_USEDEP}] - dev-python/scipy[${PYTHON_USEDEP}] - sci-libs/scikits[${PYTHON_USEDEP}] - virtual/blas:= - virtual/cblas:= -" -DEPEND=" - virtual/blas:= - virtual/cblas:= -" -BDEPEND=" - test? ( - ${RDEPEND} - dev-python/joblib[${PYTHON_USEDEP}] - ) -" - -distutils_enable_tests pytest - -python_prepare_all() { - # scikits-learn now uses the horrible numpy.distutils automagic - export SCIPY_FCONFIG="config_fc --noopt --noarch" - - # remove bundled cblas - rm -rf sklearn/src || die "failed to remove bundled cblas" - - distutils-r1_python_prepare_all -} - -python_compile() { - distutils-r1_python_compile ${SCIPY_FCONFIG} -} - -python_test() { - distutils_install_for_testing ${SCIPY_FCONFIG} - pushd "${TEST_DIR}/lib" >/dev/null || die - pytest -vv || die "testing failed with ${EPYTHON}" - popd >/dev/null || die -} - -python_install() { - distutils-r1_python_install ${SCIPY_FCONFIG} -} - -python_install_all() { - find "${S}" -name \*LICENSE.txt -delete - distutils-r1_python_install_all - if use examples; then - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples - fi - -} diff --git a/sci-libs/shapely/Manifest b/sci-libs/shapely/Manifest new file mode 100644 index 000000000000..be3d0db03bb6 --- /dev/null +++ b/sci-libs/shapely/Manifest @@ -0,0 +1,8 @@ +AUX shapely-1.6.4_p2-test_operations.patch 722 BLAKE2B 661659bc1d2f8c8a5d6b77f0ca746024aa9724f2c25047d8203d591a4f793982d4cf9bebaa6abcaf48c0cf1b266ef941b986897d26bece39519f8fcaf5dcaf96 SHA512 c1e9eda0cf8dbfbcee2d6994f470559507c754fa2bf03973ac692ca6bd2fcf62ce05e15116515877e8900a89c55c6b2bf6e70b74e2cfced8d3852608901b34db +DIST Shapely-1.6.4.post2.tar.gz 225745 BLAKE2B 96e995db6dd1464bac7c2562efdc7f298a5f23c388e44f334db685b1cfa1025ff403db870e11328977a267483726504e03b6d7c47fe4234a3a5966a13b2b7311 SHA512 027c816ef2104f654569ca658b52b87c60e5ba6a45927fcc51c23dd1922f3f9f7fdcea3601160b0a999e39611617142833ccac790777093be8b96a0d9083f78f +DIST shapely-1.7.0.tar.gz 281419 BLAKE2B 1a4e84104f21d2f5a5eb810883a89deb20fd47cf146efed884994786364b29bb5a194b063a50ae21842c07c335cbbee0c3d1a1e4ff4e43e0d083080fe33815ac SHA512 4d944fc6727e11d004ef7ba0325c159aa5ae03043f17b029ab0a399d6dcd361c4d299ad864a045a99b0229e333d5b42634bc6fd1ed94b914b7cf58fb886af2de +DIST shapely-1.7.1.tar.gz 293368 BLAKE2B 14d9cb0c2b486a3a20b71c0cde7260ec357287ea020352c0320eea07b91674605bdcd22512b33c5ac5a71b89c3d811946f8dd6d3b90c61398203a4c68f30d067 SHA512 72070437960a8c1cf6504b5f4ccc8ec509f87fb6a90178e291aff14889f5add89f9ed4f7e9a19799ce0835c1aea3f0241eaa6efd4d8ea5b879f2167f7c1de50a +EBUILD shapely-1.6.4_p2-r1.ebuild 1261 BLAKE2B 642299e5826a038c523a5bced181f9bbfedccd6cc09f9e7420ff8182f425ea94e54989fb595659a2e8a25054e40c80ea0ea1621d198e986b83432faf54e8edad SHA512 5a2df29e69ed543ee8bdcf3a9b972769a95000be8948ee2e08f0ed86d867b41eb4713d8137bbc9add0af9f888791c7a6d67e9e025374b867d7df3356b3ca7557 +EBUILD shapely-1.7.0.ebuild 841 BLAKE2B 215c6b3cbef150d7de204c0537962c68851578404ae0aeac37ee7339e74fdec6e4559dcb776c45be83eb56093f6b822ce41978132291495d98b892746388cac4 SHA512 4e19ff01ef50b6ce96a70052725d1bbf57f39d46d3305c9ac5fb12bec0581abf3c009ee2daae636ae3c57ae4ab35a70c08bf71d50fe5e0e9774fec5f59fe86ff +EBUILD shapely-1.7.1.ebuild 839 BLAKE2B cdff940dce5acbd360bb81467475bdf7bd95d512f23c45c9bc7604c6769d56f5e111e0c6a830ab3c79ef84b17fe9878eb424ddd56b62588a80cb18115b68af2e SHA512 407d39827d32b759fc7944195bed880243424374555471a283700c47426e39ab3ec57ec6808e41b9670f1783f580f19737c0aeb12ca2f39da1ef32bf6e17e0e5 +MISC metadata.xml 783 BLAKE2B 365db96ce9bd755cd3c080f84883666ceb74d1b78a5a0692552f53a6a5b5dd468c973857f0d0e860ffc6a78c623518e6bd781682118ff0d1e355fca68bdc861c SHA512 e97b0011a6581773ddc9b13879517f2295c850822f267dc3af34b4dae0683f3e0e3b60900b2cf6206084da7bc32561e42f64e7c3709461a40305bf821667450b diff --git a/sci-libs/shapely/files/shapely-1.6.4_p2-test_operations.patch b/sci-libs/shapely/files/shapely-1.6.4_p2-test_operations.patch new file mode 100644 index 000000000000..a9213a333765 --- /dev/null +++ b/sci-libs/shapely/files/shapely-1.6.4_p2-test_operations.patch @@ -0,0 +1,17 @@ +Description: Mark test_operations as xfail. + # Intersection + > self.assertIsInstance(point.intersection(Point(-1, -1)), + GeometryCollection) + E AssertionError: is not an instance of +Author: Bas Couwenberg + +--- a/tests/test_operations.py ++++ b/tests/test_operations.py +@@ -7,6 +7,7 @@ from shapely.geos import TopologicalErro + + class OperationsTestCase(unittest.TestCase): + ++ @pytest.mark.xfail(reason="Intersection: Point is not an instance of GeometryCollection") + def test_operations(self): + point = Point(0.0, 0.0) + diff --git a/sci-libs/shapely/metadata.xml b/sci-libs/shapely/metadata.xml new file mode 100644 index 000000000000..c23d0b5a4d40 --- /dev/null +++ b/sci-libs/shapely/metadata.xml @@ -0,0 +1,17 @@ + + + + + 3dprint@gentoo.org + Gentoo 3D Printer Project + + + Shapely is a BSD-licensed Python package for manipulation and analysis of planar geometric objects. + It is based on the widely deployed GEOS (the engine of PostGIS) and JTS (from which GEOS is ported) libraries. + Shapely is not concerned with data formats or coordinate systems, but can be readily integrated with packages that are. + + + Toblerity/Shapely + Shapely + + diff --git a/sci-libs/shapely/shapely-1.6.4_p2-r1.ebuild b/sci-libs/shapely/shapely-1.6.4_p2-r1.ebuild new file mode 100644 index 000000000000..be793427c4b7 --- /dev/null +++ b/sci-libs/shapely/shapely-1.6.4_p2-r1.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +MY_PN="Shapely" +MY_PV="$(ver_cut 1-3).post$(ver_cut 5)" +MY_P="${MY_PN}-${MY_PV}" + +PYTHON_COMPAT=( python3_{6,7,8} ) + +inherit distutils-r1 + +DESCRIPTION="Geometric objects, predicates, and operations" +HOMEPAGE="https://pypi.org/project/Shapely/" + +if [[ ${PV} == "9999" ]] ; then + inherit git-r3 + SRC_URI="" + EGIT_REPO_URI="https://github.com/Toblerity/${MY_PN}.git" +else + SRC_URI="mirror://pypi/${PN:0:1}/${MY_P}.tar.gz" + KEYWORDS="amd64 ~arm64 x86" +fi + +LICENSE="BSD" +SLOT="0" +IUSE="test" + +BDEPEND="dev-python/setuptools[${PYTHON_USEDEP}] + test? ( dev-python/pytest[${PYTHON_USEDEP}] )" +RDEPEND="dev-python/numpy[${PYTHON_USEDEP}] + >=sci-libs/geos-3.3" +DEPEND="${RDEPEND} + dev-python/cython[${PYTHON_USEDEP}]" + +RESTRICT="!test? ( test )" + +PATCHES=( "${FILESDIR}/${P}-test_operations.patch" ) # bug 701624 + +S="${WORKDIR}/${MY_P}" + +python_prepare_all() { + # fix install path for Cython definition file + sed -i \ + -e "s|\(data_files.*\)'shapely'|\1'share/shapely'|" \ + setup.py || die + + distutils-r1_python_prepare_all +} + +python_test() { + distutils_install_for_testing + cd "${TEST_DIR}/lib" || die + cp -r "${S}/tests" . || die + py.test tests || die +} diff --git a/sci-libs/shapely/shapely-1.7.0.ebuild b/sci-libs/shapely/shapely-1.7.0.ebuild new file mode 100644 index 000000000000..3e2d10095cec --- /dev/null +++ b/sci-libs/shapely/shapely-1.7.0.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +MY_PN="Shapely" +MY_P="${MY_PN}-${PV}" + +PYTHON_COMPAT=( python3_{7..8} ) + +inherit distutils-r1 + +DESCRIPTION="Geometric objects, predicates, and operations" +HOMEPAGE="https://pypi.org/project/Shapely/ https://github.com/Toblerity/Shapely" +SRC_URI="https://github.com/Toblerity/Shapely/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~arm64 ~x86" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + >=sci-libs/geos-3.3 +" + +BDEPEND="${RDEPEND} + dev-python/cython[${PYTHON_USEDEP}] +" + +S="${WORKDIR}/${MY_P}" + +distutils_enable_tests pytest + +distutils_enable_sphinx docs dev-python/matplotlib + +python_test() { + distutils_install_for_testing + ${EPYTHON} -m pytest tests || die "tests failed under ${EPYTHON}" +} diff --git a/sci-libs/shapely/shapely-1.7.1.ebuild b/sci-libs/shapely/shapely-1.7.1.ebuild new file mode 100644 index 000000000000..483e0920ac6e --- /dev/null +++ b/sci-libs/shapely/shapely-1.7.1.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +MY_PN="Shapely" +MY_P="${MY_PN}-${PV}" + +PYTHON_COMPAT=( python3_{7..9} ) + +inherit distutils-r1 + +DESCRIPTION="Geometric objects, predicates, and operations" +HOMEPAGE="https://pypi.org/project/Shapely/ https://github.com/Toblerity/Shapely" +SRC_URI="https://github.com/Toblerity/Shapely/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="amd64 ~arm64 x86" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + >=sci-libs/geos-3.3 +" + +BDEPEND="${RDEPEND} + dev-python/cython[${PYTHON_USEDEP}] +" + +S="${WORKDIR}/${MY_P}" + +distutils_enable_tests pytest + +distutils_enable_sphinx docs dev-python/matplotlib + +python_test() { + distutils_install_for_testing + ${EPYTHON} -m pytest tests || die "tests failed under ${EPYTHON}" +} diff --git a/sci-libs/shogun/Manifest b/sci-libs/shogun/Manifest deleted file mode 100644 index 476c2250092a..000000000000 --- a/sci-libs/shogun/Manifest +++ /dev/null @@ -1,6 +0,0 @@ -AUX shogun-4.1.0-remove-C-linkage.patch 825 BLAKE2B c95a7a322b669aa51a9a334700887914b239f240e2fc7932975aad8a5816dadb5a22ea4d2bc8ad86ea4bf3bf534d197ed9aa1144ea641bf1483ed1fe9886f3a2 SHA512 96bdedabcf2e5db1d37f87017c0c436acad97f4ba43a9a2f3c2bb920d8d764dfbc6a3825334e90ed19729870a283a658c24bea5f6ca0ac588a3f9b4bfae9a302 -AUX shogun-5.0.0-fix-buildsystem.patch 2889 BLAKE2B 63593dcf5f077310c31983446d5060c15c23d45d3eb5e3780c0d7a53074ccef57da79fb115ce67b109ed94f2e58aa1e5804bdbd1d0d0a13c05de716de7ed1058 SHA512 3119a95e8fe76804eb113361e09260bbb951679faeb3360d378c0a9afcdbf322ac75f02da6e4c799102949abbd97006f2bbb7550b5f5b01fa8b4335ac530f377 -DIST shogun-5.0.0.tar.bz2 2448509 BLAKE2B 85352d782740b4c671bb6081e0445bb7e801e27e36fdc0f82658b937fd6658c41016e4a91841ddb09ae9062b77d32f290f56b191318c1c34bf0812d1b9a8b364 SHA512 fa8d9dee4596acce12022540a6927cbdb62e08f8468c8be3790de07ebf3a53055032bcc532b28334ca83284c38f2b0153602634f12bafe4019acb9121b9ff236 -DIST shogun-data-0.9.tar.bz2 287533841 BLAKE2B 796830262205961b88715f4eb60a47ff2ad108426b7af8e4e1a0733920962ad8154a1ab9892356e9793be24d415fcbc358960210f089a0173f55a0091ea3c0d1 SHA512 ab501640e2db650603899c857866b451fac5c7bbbc7b4ef98559581928869cea49aa326dfca1bb398eee7ebc8843dcc8ee3105c9f462718f1af672aac6b9340a -EBUILD shogun-5.0.0-r1.ebuild 3951 BLAKE2B 41165437edeb2f42204323c59cef31013e2decb0b2666b64baab9c8f6ab1382a9d5467f8dd52f4f67f31e242b15a4eecf94af19283289b3a0be49d3333bde74d SHA512 4e3136be78a8f23a75f340625bc9ee12b68ad929e6fdae491e8cf49d0ca73fee48abf0536af2932cb04659d0454d4e4b2428f6a778a206dc8ce866ea80c93c42 -MISC metadata.xml 1627 BLAKE2B 871fc71cd8ae67ef94fa060b50f249b233333ec934db4d8ad238f24408e491f071d1271903f57ad2548923b2091c0f2738a7ce3f269d5c24fd10300aaf179047 SHA512 babaf4f8a5d4a7d83e678d2ba1cb4f29a15a928740e7c2b312fe03ffd2c909f1f867a071573954269a03bd8f915f38f82c4c11782573ae08be6ec053cf3b54c6 diff --git a/sci-libs/shogun/files/shogun-4.1.0-remove-C-linkage.patch b/sci-libs/shogun/files/shogun-4.1.0-remove-C-linkage.patch deleted file mode 100644 index 08edcfac97a2..000000000000 --- a/sci-libs/shogun/files/shogun-4.1.0-remove-C-linkage.patch +++ /dev/null @@ -1,24 +0,0 @@ -Prevent C linkage errors due to templates in extern "C" blocks: -* /usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/include/g++-v5/bits/cpp_type_traits.h:85:3: error: template with C linkage -* template -* ^ -* /usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/include/g++-v5/bits/cpp_type_traits.h:89:3: error: template specialization with C linkage -* template<> -* ^ -extern "C" blocks can be removed in shogun, as R internally correctly protects C symbols - ---- shogun-4.1.0/src/interfaces/r_modular/sg_print_functions.cpp -+++ shogun-4.1.0/src/interfaces/r_modular/sg_print_functions.cpp -@@ -1,4 +1,3 @@ --extern "C" { - #include - #include - #include -@@ -7,7 +6,6 @@ - #include - #include - #include --} - - #include - #include diff --git a/sci-libs/shogun/files/shogun-5.0.0-fix-buildsystem.patch b/sci-libs/shogun/files/shogun-5.0.0-fix-buildsystem.patch deleted file mode 100644 index 1eb7cd075ece..000000000000 --- a/sci-libs/shogun/files/shogun-5.0.0-fix-buildsystem.patch +++ /dev/null @@ -1,72 +0,0 @@ -* Remove setting of user flags -* Remove erroneous bundling of Eigen - ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -33,15 +33,6 @@ - SET(EIGEN_VERSION_MINIMUM 3.1.2) - SET(VIENNACL_VERSION_MINIMUM 1.5.0) - --# Store system's or distribution's C[XX]FLAGS. --SET(SYSTEM_C_FLAGS "${CMAKE_C_FLAGS}") --SET(SYSTEM_CXX_FLAGS "${CMAKE_CXX_FLAGS}") --STRING(TOUPPER "${CMAKE_BUILD_TYPE}" BUILD_TYPE_UC) --IF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) -- SET(CMAKE_C_FLAGS "") -- SET(CMAKE_CXX_FLAGS "") --ENDIF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) -- - # CCACHE - OPTION(ENABLE_CCACHE "Enable ccache for compilation" ON) - FIND_PACKAGE(CCache) -@@ -174,24 +165,6 @@ - SET(COMPILER_WARNINGS "-Wall -Wno-unused-parameter -Wformat -Wformat-security -Wparentheses -Wshadow -Wno-unknown-pragmas -Wno-deprecated") - ENDIF() - --IF(CMAKE_COMPILER_IS_GNUCXX) -- SET(RELEASE_COMPILER_FLAGS "-fexpensive-optimizations -frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -funroll-loops") -- IF (${MACHINE} MATCHES "x86_64" OR ${MACHINE} MATCHES "i686") -- SET(RELEASE_COMPILER_FLAGS "${RELEASE_COMPILER_FLAGS} -mfpmath=sse") -- ENDIF() --ELSEIF(${CMAKE_CXX_COMPILER_ID} STREQUAL "Clang") -- SET(RELEASE_COMPILER_FLAGS "-funroll-loops") --ENDIF() --SET(SWIG_CXX_COMPILER_FLAGS "-O0 -g") --SET(CMAKE_C_FLAGS "${COMPILER_WARNINGS} ${CMAKE_C_FLAGS}") --SET(CMAKE_CXX_FLAGS "${COMPILER_WARNINGS} ${CMAKE_CXX_FLAGS}") --SET(CMAKE_C_FLAGS_RELEASE "-O3 ${RELEASE_COMPILER_FLAGS}") --SET(CMAKE_CXX_FLAGS_RELEASE "-O3 ${RELEASE_COMPILER_FLAGS}") --SET(CMAKE_C_FLAGS_DISTRIBUTION "-O2") --SET(CMAKE_CXX_FLAGS_DISTRIBUTION "-O2") --SET(CMAKE_C_FLAGS_DEBUG "-g") --SET(CMAKE_CXX_FLAGS_DEBUG "-g") -- - OPTION(ENABLE_COVERAGE "Enable code coverage" OFF) - IF(ENABLE_COVERAGE) - IF(NOT CMAKE_COMPILER_IS_GNUCXX) -@@ -617,13 +590,6 @@ - include(external/Eigen3) - LIST(APPEND SYSTEM_INCLUDES ${EIGEN_INCLUDE_DIR}) - ELSE() -- # eigen3 bug related to aliasing operators and self-storing. -- # TODO put in proper reference and version from when this is fixed -- IF(${EIGEN_VERSION} VERSION_GREATER 3.2.90) -- MESSAGE(WARNING "The system Eigen3 version ${EIGEN_VERSION} is buggy, manually bundling.") -- include(external/Eigen3) -- ENDIF() -- - LIST(APPEND SYSTEM_INCLUDES ${EIGEN_INCLUDE_DIR}) - ENDIF() - -@@ -957,11 +923,6 @@ - # Respect system's or distribution's C[XX]FLAGS. - OPTION(SWIG_WITH_SYSTEM_CFLAGS "Enable system's C[XX]FLAGS for compilation of swig-binaries" ON) - --IF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) -- SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${SYSTEM_C_FLAGS}") -- SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${SYSTEM_CXX_FLAGS}") --ENDIF(NOT ("${BUILD_TYPE_UC}" STREQUAL "DISTRIBUTION")) -- - IF(SWIG_WITH_SYSTEM_CFLAGS) - SET(SWIG_CXX_COMPILER_FLAGS "${SWIG_CXX_COMPILER_FLAGS} ${SYSTEM_CXX_FLAGS}") - ENDIF(SWIG_WITH_SYSTEM_CFLAGS) diff --git a/sci-libs/shogun/metadata.xml b/sci-libs/shogun/metadata.xml deleted file mode 100644 index 88454ce87eb6..000000000000 --- a/sci-libs/shogun/metadata.xml +++ /dev/null @@ -1,32 +0,0 @@ - - - - - sci@gentoo.org - Gentoo Science Project - - - SHOGUN - is a new machine learning toolbox with focus on large - scale kernel methods and especially on Support Vector Machines - (SVM) with focus to bioinformatics. It provides a generic SVM - object interfacing to several different SVM implementations. Each - of the SVMs can be combined with a variety of the many kernels - implemented. It can deal with weighted linear combination of a - number of sub-kernels, each of which not necessarily working on the - same domain, where an optimal sub-kernel weighting can be learned - using Multiple Kernel Learning. Apart from SVM 2-class - classification and regression problems, a number of linear methods - like Linear Discriminant Analysis (LDA), Linear Programming Machine - (LPM), (Kernel) Perceptrons and also algorithms to train hidden - markov models are implemented. The input feature-objects can be - dense, sparse or strings and of type int/short/double/char and can - be converted into different feature types. Chains of preprocessors - (e.g. substracting the mean) can be attached to each feature object - allowing for on-the-fly pre-processing. - - - Enable support for dev-lang/R - Enable support for sci-mathematics/octave - Enable support for building against OpenCL - - diff --git a/sci-libs/shogun/shogun-5.0.0-r1.ebuild b/sci-libs/shogun/shogun-5.0.0-r1.ebuild deleted file mode 100644 index d4e67145a5f1..000000000000 --- a/sci-libs/shogun/shogun-5.0.0-r1.ebuild +++ /dev/null @@ -1,167 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_6 ) - -inherit cmake-utils flag-o-matic python-single-r1 toolchain-funcs versionator - -MYPV=$(get_version_component_range 1-2) -MYPD=${PN}-data-0.9 - -DESCRIPTION="Large Scale Machine Learning Toolbox" -HOMEPAGE="https://shogun-toolbox.org/" -SRC_URI=" - ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2 - test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 ) - examples? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )" - -LICENSE="GPL-3 free-noncomm" -SLOT="0/16" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="cpu_flags_x86_sse doc examples lua octave opencl python R ruby static-libs test" -RESTRICT="!test? ( test )" - -REQUIRED_USE=" - python? ( ${PYTHON_REQUIRED_USE} ) - test? ( python )" - -RDEPEND=" - app-arch/bzip2 - app-arch/gzip - app-arch/lzma - app-arch/snappy - dev-libs/lzo - dev-cpp/eigen:3 - dev-libs/json-c:= - dev-libs/libxml2 - dev-libs/protobuf:= - net-misc/curl - sci-libs/arpack - sci-libs/arprec - sci-libs/colpack - sci-libs/hdf5:= - sci-libs/nlopt - sci-mathematics/glpk:= - sci-mathematics/lpsolve:= - sys-libs/readline:0= - sys-libs/zlib - virtual/blas - virtual/cblas - virtual/lapack - lua? ( dev-lang/lua:0 ) - octave? ( >=sci-mathematics/octave-4.2.0:=[hdf5] ) - opencl? ( virtual/opencl ) - python? ( - ${PYTHON_DEPS} - $(python_gen_cond_dep ' - dev-python/numpy[${PYTHON_MULTI_USEDEP}] - ') - ) - R? ( dev-lang/R ) - ruby? ( dev-ruby/narray )" -DEPEND="${RDEPEND} - virtual/pkgconfig - doc? ( - >=app-doc/doxygen-1.8.13-r1[dot] - dev-python/sphinx - ) - lua? ( >=dev-lang/swig-3.0.12 ) - octave? ( >=dev-lang/swig-3.0.12 ) - python? ( - >=dev-lang/swig-3.0.12 - test? ( - dev-python/scipy - ) - ) - R? ( >=dev-lang/swig-3.0.12 ) - ruby? ( >=dev-lang/swig-3.0.12 ) - test? ( - $(python_gen_cond_dep ' - dev-python/jinja[${PYTHON_MULTI_USEDEP}] - ') - >=dev-cpp/gtest-1.8.0 - )" - -# javamodular needs jblas (painful to package properly) -# permodular work in progress (as 3.2.0) -# could actually support multiple pythons, multiple rubys -# feel free to do work for it - -PATCHES=( - "${FILESDIR}"/${PN}-5.0.0-fix-buildsystem.patch - "${FILESDIR}"/${PN}-4.1.0-remove-C-linkage.patch -) - -pkg_setup() { - use python && python-single-r1_pkg_setup -} - -src_configure() { - export ATLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas lapack)" - export CBLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas)" - export ATLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas cblas lapack)" - export LAPACK_LIBRARIES="$($(tc-getPKG_CONFIG) --libs lapack)" - - append-cppflags "$($(tc-getPKG_CONFIG) --cflags cblas)" - - local mycmakeargs=( - -DCMAKE_SKIP_RPATH=ON - -DCMAKE_SKIP_INSTALL_RPATH=ON - -DLIB_INSTALL_DIR=$(get_libdir) - -DENABLE_TESTING=$(usex test) - -DBUILD_EXAMPLES=$(usex examples) - -DDISABLE_SSE=$(usex !cpu_flags_x86_sse) - -DCMAKE_DISABLE_FIND_PACKAGE_Pandoc=ON - $(cmake-utils_use_find_package doc Sphinx) - $(cmake-utils_use_find_package doc Doxygen) - - # Features: - -DENABLE_COVERAGE=OFF - -DENABLE_COLPACK=ON - -DENABLE_PROTOBUF=ON - -DENABLE_PYTHON_DEBUG=OFF - -DENABLE_VIENNACL=$(usex opencl) - -DUSE_ARPREC=ON - -DUSE_HDF5=ON - - # Bindings: - -DJavaModular=OFF - -DPerlModular=OFF - -DCSharpModular=OFF - -DLuaModular=$(usex lua) - -DOctaveModular=$(usex octave) - -DPythonModular=$(usex python) - -DRModular=$(usex R) - -DRubyModular=$(usex ruby) - - # Disable bundled libs - -DBUNDLE_COLPACK=OFF - -DBUNDLE_JSON=OFF - -DBUNDLE_NLOPT=OFF - ) - cmake-utils_src_configure - - # gentoo bug #302621 - has_version 'sci-libs/hdf5[mpi]' && export CXX=mpicxx CC=mpicc -} - -src_compile() { - cmake-utils_src_compile - use doc && cmake-utils_src_compile -C doc -} - -src_install() { - cmake-utils_src_install - - if use doc; then - local i - for i in lua octave python R ruby; do - if use $i; then - docinto html/${i,}_modular - dodoc -r "${BUILD_DIR}"/src/interfaces/${i,}_modular/modshogun/doxygen_xml/. - fi - done - fi -} diff --git a/sci-libs/sktime/Manifest b/sci-libs/sktime/Manifest new file mode 100644 index 000000000000..392989374e96 --- /dev/null +++ b/sci-libs/sktime/Manifest @@ -0,0 +1,3 @@ +DIST sktime-0.4.2.tar.gz 9662976 BLAKE2B 248c2a9868f9199caab5c4c724ddcad61301a75ce1425baaabb2185da37d80a68332bf5c2d2d64a10e0b844bea9226be5291005d9893705eb0ff8f2018c6493d SHA512 855b33f42f938c671e99b8fa58ff6adbf67144daf53dd883ac041fe9b8cd5400cfbb8e27169d491c6bea2d76a53c035bae08d9e4f8a1c6f5f444c08bcd65c4f4 +EBUILD sktime-0.4.2.ebuild 754 BLAKE2B 755cb1ca5f841e6ff6602461a55fe498186d9c3e6ab0343a30ee15b81f5d11d8a389a0876ecfe59deba4f401a450c58c9d16debf6f77fed98381079f625c1524 SHA512 e78df11e7d3cb1cbdcb30ae0518b5d791d9c2f898644cfa58b315f572566ca3bb625b4a5f27bcfbc663e0f429a445b22077354c081e2a8f721e519f1025717c9 +MISC metadata.xml 513 BLAKE2B f62f3b568ddc39ea99a6335525b344a5ccca6d015c52aa0e4b6d440d446b8ef04f03902f58377be5ee138d4b1563a45bd94ba4cf5fa029ba336bb756cb4163c2 SHA512 be665b116579427beed389b5404f02cdd2d55e858a818e2ea2f9883bf4a9b6ad8aa819367db94540170afe04dd2f271911f756bd5e872484b13268be4185ff9a diff --git a/sci-libs/sktime/metadata.xml b/sci-libs/sktime/metadata.xml new file mode 100644 index 000000000000..a88194c685df --- /dev/null +++ b/sci-libs/sktime/metadata.xml @@ -0,0 +1,16 @@ + + + + + gentoo@aisha.cc + Aisha Tammy + + + sci@gentoo.org + Gentoo Science Project + + + sktime + alan-turing-institute/sktime + + diff --git a/sci-libs/sktime/sktime-0.4.2.ebuild b/sci-libs/sktime/sktime-0.4.2.ebuild new file mode 100644 index 000000000000..b3b2954314fc --- /dev/null +++ b/sci-libs/sktime/sktime-0.4.2.ebuild @@ -0,0 +1,34 @@ +# Copyright 2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6..9} ) +DISTUTILS_IN_SOURCE_BUILD=1 +inherit distutils-r1 + +DESCRIPTION="scikit-learn toolbox for working with time series" +HOMEPAGE="https://sktime.org" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64" + +RDEPEND=" + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/statsmodels[${PYTHON_USEDEP}] + dev-python/wheel[${PYTHON_USEDEP}] + sci-libs/scikit-learn[${PYTHON_USEDEP}] +" +DEPEND="${RDEPEND}" + +python_compile() { + distutils-r1_python_compile bdist_egg egg_info bdist_wheel +} + +python_install() { + distutils-r1_python_install + python_optimize +} diff --git a/sci-libs/suitesparseconfig/Manifest b/sci-libs/suitesparseconfig/Manifest index a63ed7f91c4e..8ef81ca6b75d 100644 --- a/sci-libs/suitesparseconfig/Manifest +++ b/sci-libs/suitesparseconfig/Manifest @@ -1,3 +1,3 @@ DIST suitesparseconfig-5.4.0.tar.bz2 257352 BLAKE2B 3832e34281c742a7d704dde866c53c742420486d782075e047b605fb2062d77353cda8670138c4bef62c73d16e123a8a74f65272a01766f124c1e53f9ba32e9d SHA512 e91f60f426b73add473c6341e30512b8fbe65b7850cd83f3852e78f1e74ce067b7ae1577ccc795698e680a841a9d32c2ca073651a4fe95f0b723578721aec874 -EBUILD suitesparseconfig-5.4.0.ebuild 789 BLAKE2B 182d30c28c5f0f29e4e94ce1f99573edc6d577884161934869f8f9d5f6f5b5fe3c5aca84680bb887e629be9966c00311afbe07a34ecd01be5e6e2ef95b859ba9 SHA512 b9755384398eba837809d2b99976d035b90d1396930627dbba31154756a2043841daf4ae1baba651af0c8b1272c6db30754acdd71d962077d1b2dd546c57a456 +EBUILD suitesparseconfig-5.4.0.ebuild 788 BLAKE2B f83043838503cb99dbe1be0dc543264b820fab18d784f4112bc7d91a8657510e693f8a645964b88de0d851e0264549a19d18220206cbd67378f83da01eb7bba8 SHA512 b4f92cd3df8a867f8baea9a4a5dc76f7bf5f9819af5bea2d603f526705211aa02503f4f8863c6917be1e6e9dfea028fcdb5b980560c4e2749a5f5312f06ef5b5 MISC metadata.xml 476 BLAKE2B f583e4dc6801797ee1572a38f1e4aaaac0811a709ce56a28d8e1f4f13f60f62a702b034809edc488d0b91920f8c5d40d48226213837d92a3e496cf65a6061c04 SHA512 fbbcd2de1d7b23e4eb45d8102fe76aa4251b83ce2b1fd7ef9cb599c7716ff662b8182060ce7b350ed3541b39483cf72c7c9ac810db1fe739f82406606412acb8 diff --git a/sci-libs/suitesparseconfig/suitesparseconfig-5.4.0.ebuild b/sci-libs/suitesparseconfig/suitesparseconfig-5.4.0.ebuild index ca2f33e39997..b73a80c867c8 100644 --- a/sci-libs/suitesparseconfig/suitesparseconfig-5.4.0.ebuild +++ b/sci-libs/suitesparseconfig/suitesparseconfig-5.4.0.ebuild @@ -13,7 +13,7 @@ SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" # SuiteSparse_config directory". LICENSE="public-domain" SLOT="0" -KEYWORDS="~alpha amd64 ~arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" +KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" IUSE="static-libs" multilib_src_configure() { diff --git a/sci-libs/sundials/Manifest b/sci-libs/sundials/Manifest index aa4725544047..92b18ddce7e3 100644 --- a/sci-libs/sundials/Manifest +++ b/sci-libs/sundials/Manifest @@ -15,5 +15,5 @@ EBUILD sundials-4.0.2.ebuild 2054 BLAKE2B 478d94f66348574f7f6f39acd026532a4b7cdb EBUILD sundials-4.1.0.ebuild 2054 BLAKE2B 478d94f66348574f7f6f39acd026532a4b7cdb496473ad526db55b185bba569ebd17e5899b44b3841920152d65e690b863ac03a2030912850cbee8b956f17eeb SHA512 9931d3f771b41b7630513136a716326992e86182237053c6fc09f92f4598f2ce5906d35d095a952b785446bbe97038c50c926370ee99ad70449be11fca47cbac EBUILD sundials-5.0.0.ebuild 1990 BLAKE2B 52ab23123248a3bc590ce5dea0bc0583bf3cd0b5587e8cbcda392a5f5b14b6229f88a247d3e2889cf8351e7f41290a09be1186857ebffaa31a3a513534d6994d SHA512 f1788b29f519eb1af18c2e2409e14bbce54e96b69144d9267840b9a9678c4fb6039dd44f03af987fb207498e23d631b4f689de0427bb77e8ef0eae6fdc360bdd EBUILD sundials-5.1.0.ebuild 2067 BLAKE2B 9f3324ddf9158af16d2489ac656a660859f80470077afaa59f0758b2f1c936110701d29bf24c482261055fc43c7b8b3e9bf7497137bacc2b3d487d87034418ca SHA512 2c1d0f672ca0c2a3b5da077557665b9f481cc9a3c8b5bc5f96e59c8cfcd05d5f9956afd2f367ffc141467961642b39d8443ffbe166850280fb12a8a0d05a0e41 -EBUILD sundials-5.2.0.ebuild 2067 BLAKE2B 9f3324ddf9158af16d2489ac656a660859f80470077afaa59f0758b2f1c936110701d29bf24c482261055fc43c7b8b3e9bf7497137bacc2b3d487d87034418ca SHA512 2c1d0f672ca0c2a3b5da077557665b9f481cc9a3c8b5bc5f96e59c8cfcd05d5f9956afd2f367ffc141467961642b39d8443ffbe166850280fb12a8a0d05a0e41 +EBUILD sundials-5.2.0.ebuild 2066 BLAKE2B 07034582741d9e807559a0ae33e3476a5d0162d875678cb540198cbea4edd4a95473bd2e311e0033d5be5737f885b0a9ba7f323f0e08e969f83e6f2ac6585f4c SHA512 dd808529c79eddb5a39b01649517f01a3a48806f4672f60be102f39e50e967a31cb4a23456857b45bfdadae4f7669704610c95c4775ea7b85c32ebb4b2b0e739 MISC metadata.xml 1059 BLAKE2B 48ccadfac9b7ea4203334ffdadaa76ab3164273835c727e76085db3a5afc179404eb21c74aad77ceb368397377afb0efa27d798c849eab2ffc35153cd4fe7588 SHA512 47da8b9edc993c480a045642ad2746ff6180e54e1ad368823fd81b0d217e72c31394d7575cb4c2d5e5cfea065dffb01751bc8b1088f0f1a6feaaea15c2c7fb8f diff --git a/sci-libs/sundials/sundials-5.2.0.ebuild b/sci-libs/sundials/sundials-5.2.0.ebuild index c6bc6848c819..fb50f916f614 100644 --- a/sci-libs/sundials/sundials-5.2.0.ebuild +++ b/sci-libs/sundials/sundials-5.2.0.ebuild @@ -16,7 +16,7 @@ SRC_URI="https://computation.llnl.gov/projects/sundials/download/${P}.tar.gz" LICENSE="BSD" SLOT="0/$(ver_cut 1)" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux" IUSE="cxx doc examples fortran hypre lapack mpi openmp sparse static-libs superlumt threads" REQUIRED_USE="hypre? ( mpi )" diff --git a/sci-libs/superlu/Manifest b/sci-libs/superlu/Manifest index 2a5b7eacfbf6..227ad46901c0 100644 --- a/sci-libs/superlu/Manifest +++ b/sci-libs/superlu/Manifest @@ -2,8 +2,11 @@ AUX superlu-4.3-autotools.patch 18676 BLAKE2B c6312a4db288aed46f696b57291268cfe4 AUX superlu-4.3-format-security.patch 312 BLAKE2B 2ab1eaa7072a06abf80373a86e73d3cd131a5dfb1fee370fac330c7932d0b20dc94f2711be077d3739af0f1d6b9779080f0ccf75a65b50156aab35cfd451b7d4 SHA512 86072c671b946a73e8857fcf60499c589c0de8ca2433c2310701a2249eb32968e7ab83e638be1fcee3358d3b1432cba988cf11644962dbf09045b4907b9ebf6a AUX superlu-5.2.1-no-implicits.patch 4950 BLAKE2B 32a01cb343e21ee870fdfec54f3e529861ddc521966d732430effaad34e442d83f53da222301ff719d81777082ccfa85a262cddf577a8b0320d0a2fc63b1e042 SHA512 9bcf34847baddd7d330638d9115359cd2bd6d7630cc24a8fd9432b83485e6b2f1bb2500971f65b1fe26ec2ca70f7483105e1a02ba4083763ca79794dabe8551a AUX superlu-5.2.1-pkgconfig.patch 1013 BLAKE2B a36aac6c06fa8cb4bd3d19fcc74b27c092283b209665cb4dc5d3336f4b025f5145a190e76105b5e96f846e02fd4fe43a71b9542937beefe5e8b375b54ad87e05 SHA512 f22dcbaaa6857008b75b8c6481b219b11c09ebcfe2dffe0a4d4f0cba6392f18fc9a5a870b2a8efa7c31df321b78186cbde7cf8739da59dc089fa3b6ae836bf36 +AUX superlu-5.2.2-no-internal-blas.patch 733 BLAKE2B d289296570a02914591ed213e1c866124ae29f94348ca5cbfe9313dc581e12aba20fd34741b89b84988365c4c64b14c47d08b82c79870ab57f21dc8d0a0f6370 SHA512 496f5ed971cdd2dfaedf065d5ec52e0c6435506fcace45ed9059cb17d9ea1914cc9b0276b68a250728cc5bcf48a184bca5638e3fcadabd170eb1c8c9d342844c DIST superlu_4.3.tar.gz 2876631 BLAKE2B 0a563e6730394f8e69fe13f1418f9f046bd37c848c51063e93a24a209e50a67f91b725eb3978fd6c4d28e51615806d6c0b6a2539cbc0d7fd11b5e4f0a9360148 SHA512 5c13da47b79160be14719f62ccdf5d59142a172e25a988fa340eaeb001a64d7f45ba39e675cb7aa3571bec52cb3a7cda0bb7a708c9608184ba6251edb7990e8c DIST superlu_5.2.1.tar.gz 2560875 BLAKE2B b1dd51bddb55061f5756f3cf766f80e506f7cc12b272c2ceebbae71cab9314000308b72cf265d5948ed69c68d0ad0adeb938a4471250147b0fcfdc2b80298db7 SHA512 30538b4c2809294b8f34646bce6445944f21a1dffaf3ec0a0f29a55d5261caa56e4279d7722bb95cc9d89450d36ded969617edc82ecce7d0f1dfb24040d80d07 +DIST superlu_5.2.2.tar.gz 2481538 BLAKE2B db9d6437c8012f1aeeb3313212298a77e4ef04405c6ec853ceeef8b80426ea80d8b9fc30a0ca2dd7288131a0e21c43e17cafafaa7fb615d6d825b54f4beb84a2 SHA512 091928a3df3433b337ebdacdb28de341d6d29d655965de6ffd656a6de18cf11171555bfd3af73082af62b1cead6835b4c11e4ba524a32db7f7d28db47c9d490c EBUILD superlu-4.3-r1.ebuild 1681 BLAKE2B 259f8829b31303e21aefab2d76d9ef3771dc0bae7418ce3b606cb6f1d457d567de517b0332067427f5cbbeea93d1ac42fa5da60b5337088f3412d3f7713a4775 SHA512 482387eb781140c1822979529cdbf83ef1b665d00cd246bab98bd70bd843bd65077bc97817e3c04ff073a44d8ed072af8ee69cb9804532b7137e6c6f9088e10b EBUILD superlu-5.2.1-r1.ebuild 1528 BLAKE2B f5da9af1ae76566415e0df6d5ec814bacd79639f073f6c6fa881957033affb589360bf26e035e07073dca4eaedb76b60368961308c0a97018a0be98e330477e0 SHA512 3b0a798b47be26a58e4a296895206623389c9ed5f4fca43b0582b75e5dfa0707734403d7a6b96ca448b13dbf793259f3015920c431e923dab59bce442e3db769 +EBUILD superlu-5.2.2.ebuild 1174 BLAKE2B 680d9e9d025dcd7907c5b03c7f1c83b9cc2a56769787376544655ee99666b434b12eb28f73fdd00aa62d3b5ecaf93a95872f19be4b643145dee6d8c7dd3fbd6d SHA512 b44e8c182b85d87d1903df61a49a038aa90082285a7a5bb77d89b8acf5aa82281474fbcc6e0c09a217dd83ba13451cfc6372f90dd2213f7da158a220a7186423 MISC metadata.xml 1404 BLAKE2B 3ab566d18d18307d9fc7dea889e492e19b76aa9fdebe0dce86b46b1cf7a2d53f65404f56da04cc8420e6a7c21867b948e537833693cb60521746c5a48f16bc6b SHA512 8b758572ed599bdf43898050e265ce8ea82c4952af97471c09ee0013e56cf6928df3f3a436516c4fae7a38a13bba4a3437e130f294f942eaaae05125fa5fbdea diff --git a/sci-libs/superlu/files/superlu-5.2.2-no-internal-blas.patch b/sci-libs/superlu/files/superlu-5.2.2-no-internal-blas.patch new file mode 100644 index 000000000000..e48a7c86fa31 --- /dev/null +++ b/sci-libs/superlu/files/superlu-5.2.2-no-internal-blas.patch @@ -0,0 +1,19 @@ +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 08027ce..8884585 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -121,13 +121,7 @@ if(BLAS_FOUND) + set(BLAS_LIB_EXPORT ${BLAS_LIB_STR}) + else() + message("-- Did not find or specify BLAS so configure to build internal CBLAS ...") +- add_subdirectory(CBLAS) +- set(BLAS_LIB blas) +- if (BUILD_SHARED_LIBS) # export to be referenced by downstream makefile +- set(BLAS_LIB_EXPORT ${CMAKE_INSTALL_PREFIX}/CBLAS/libblas.so) +- else() +- set(BLAS_LIB_EXPORT ${CMAKE_INSTALL_PREFIX}/CBLAS/libblas.a) +- endif() ++ message( FATAL_ERROR "Could not find BLAS, refusing to use internal copy" ) + endif() + + ###################################################################### diff --git a/sci-libs/superlu/superlu-5.2.2.ebuild b/sci-libs/superlu/superlu-5.2.2.ebuild new file mode 100644 index 000000000000..723d6ba29bbc --- /dev/null +++ b/sci-libs/superlu/superlu-5.2.2.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +FORTRAN_STANDARD=77 + +inherit cmake fortran-2 + +DESCRIPTION="Sparse LU factorization library" +HOMEPAGE="https://crd-legacy.lbl.gov/~xiaoye/SuperLU/" +SRC_URI="https://crd-legacy.lbl.gov/~xiaoye/SuperLU//${PN}_${PV}.tar.gz" + +LICENSE="BSD" +SLOT="0/$(ver_cut 1)" +KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples test" +RESTRICT="!test? ( test )" + +BDEPEND="virtual/pkgconfig + test? ( app-shells/tcsh )" +RDEPEND="virtual/blas" +DEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}/${PN}-5.2.2-no-internal-blas.patch" +) + +src_prepare() { + cmake_src_prepare + # respect user's CFLAGS + sed -i -e 's/O3//' CMakeLists.txt || die +} + +src_configure() { + local mycmakeargs+=( + -DCMAKE_INSTALL_INCLUDEDIR="include/superlu" + -DBUILD_SHARED_LIBS=ON + -Denable_internal_blaslib=OFF + -Denable_tests=$(usex test) + ) + cmake_src_configure +} + +src_install() { + cmake_src_install + use doc && dodoc -r DOC/html + if use examples; then + docinto examples + dodoc -r EXAMPLE FORTRAN + docompress -x /usr/share/doc/${PF}/examples + fi +} diff --git a/sci-libs/symengine/Manifest b/sci-libs/symengine/Manifest index 28fe36575037..95c6511b6601 100644 --- a/sci-libs/symengine/Manifest +++ b/sci-libs/symengine/Manifest @@ -1,3 +1,3 @@ DIST symengine-0.6.0.tar.gz 763481 BLAKE2B 37fe94ad08463b31c7387ab296b201a4dda821ba59dfa548d0c42e70d23958bae24df3f035bd3fffb46cc08cc010d13a25e607a9e0644e9b3c0602fa0eb363b3 SHA512 cc6f0468534e5bcd466a810d44f9884b17858ca6c7151cdcadb3af0f7d8faf0d96697d5887ab65fc9094de80df825f8243dabc54e3f5c387be544880f49b482b -EBUILD symengine-0.6.0.ebuild 2193 BLAKE2B 775daf836fc5fc1a0860645201ca905184383f5409e95c482b702cdc4891658f2fcd70e99ef8c5667d536598f5025616398405f0670ec69ddaf42549bef7c00d SHA512 b966d73b297cea26f9b7f1d85014f8753ec009a268844e777a8f453934e13c352803bca48d855933450529c64471da1f09b6fba1d828928187ceed2a71171b92 +EBUILD symengine-0.6.0.ebuild 2205 BLAKE2B 4bbd97357a16e4bbad1fcfdf26034dc51f5bd6718369f709978d0f9a7b399b473ea776ac6562979d29e1accc2f84f897ef8f58d116d0331e4092da5ba0278abb SHA512 403bb10352daad01d3665f06858400dd03875802817e0e1a8a8bf936fbd6a3cdd191ea4523aa056d6f19874125ad9949cea3b950a75c6dca75688848ed107c76 MISC metadata.xml 1265 BLAKE2B f91a4783ae464dee61dbca5f532bb73a217600b49633f0c80ee46f7650f27f2e37e32cd4f5e14e171e6a47eb4c612d686f883034378afb73520ed0c22862d564 SHA512 f2a634346a9f703565959b48d7648df6abb088a479819aa3f9818ae941df168dbfa3cb1867f48673fce9f24dc890d05134689d93edb0d6761f2a54f4c802037e diff --git a/sci-libs/symengine/symengine-0.6.0.ebuild b/sci-libs/symengine/symengine-0.6.0.ebuild index 2c9b5a766fd4..ae13a29f65d2 100644 --- a/sci-libs/symengine/symengine-0.6.0.ebuild +++ b/sci-libs/symengine/symengine-0.6.0.ebuild @@ -12,7 +12,7 @@ SRC_URI="https://github.com/sympy/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" LICENSE="MIT" SLOT="0/0.4" -KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" +KEYWORDS="amd64 ~arm ~arm64 x86 ~amd64-linux ~x86-linux" IUSE="arb benchmarks boost debug doc ecm flint llvm mpc mpfr openmp test tcmalloc threads" RESTRICT="!test? ( test )" diff --git a/sci-libs/szip/Manifest b/sci-libs/szip/Manifest index 83ff901f8bfa..701e71f32267 100644 --- a/sci-libs/szip/Manifest +++ b/sci-libs/szip/Manifest @@ -1,3 +1,3 @@ DIST szip-2.1.tar.gz 383219 BLAKE2B 84e10763bcec885a423d64c2c3cff0632d7a6a39c8cd177cf607f549cb4cd02a4ca03362464c2c4ec4539c80149493329427f529f5d6daea4a35b91af6fa1538 SHA512 bb7e0af6dfaaaaa85013ef52e6901d5b7b6159795338d285c2e843bd2879230a6397fb072662fdfeda5690981db4e9af94782c057bf993f92516d92a8934cb75 -EBUILD szip-2.1-r2.ebuild 714 BLAKE2B 1af45888836f994bd11cfae25c3925cd3a78c9c3522052bd8c357969b948bda94358aa466b821f74aa44eef3c27acfb8dbb70f107d77c0c01cd1023a0c5b27dc SHA512 c63edb78e85d4b196fa4ecd815185ceff5fa21bb3826290efe0ae30d00b367feee6f71381ef888df739b6db063b87ffbf15a5745bcc4710a58cfe4a5a8ff9475 +EBUILD szip-2.1-r2.ebuild 713 BLAKE2B 8f6a03b312a63d2ce2bdac4ddf69a3e35d196cc58867b38e9384c00444ba3a4809beca8bd26b3b4bce57757b9751212b1914005ff0fd70b98fd10f6543c95f16 SHA512 b8266fe30066d7d0620cc72c24b5132998d1ae95faacd84169eb6eec91a29752f501e7826f104755039de241c60b9e52021f134139ed97bf9a0ab0f4924d9cdc MISC metadata.xml 765 BLAKE2B a720dfb9f71c9f9adc5e539b2a791b8edcd2fce2b1540b17066c09e1d3895d40e147ddd2ef86499c6a9db3c2c68c3bb9aae3357f13d86370d7fba8069f968368 SHA512 c56edc42adeff2e523e9a312b0393f45647b2a902334221d2b9842afa1ecd885a17f108041cad69a0797bdc1eb58c75672226a0c3a2f4c8f561ab8a70eb28b27 diff --git a/sci-libs/szip/szip-2.1-r2.ebuild b/sci-libs/szip/szip-2.1-r2.ebuild index da08b6a5c3c9..eeb985247c0a 100644 --- a/sci-libs/szip/szip-2.1-r2.ebuild +++ b/sci-libs/szip/szip-2.1-r2.ebuild @@ -9,7 +9,7 @@ SRC_URI="ftp://ftp.hdfgroup.org/lib-external/${PN}/${PV}/src/${P}.tar.gz" LICENSE="szip" SLOT="0/2" -KEYWORDS="~alpha amd64 ~arm ~arm64 hppa ~ia64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux" +KEYWORDS="~alpha amd64 arm ~arm64 hppa ~ia64 ppc ppc64 sparc x86 ~amd64-linux ~x86-linux" IUSE="static-libs" RDEPEND="!sci-libs/libaec[szip]" diff --git a/sci-libs/tensorflow-estimator/Manifest b/sci-libs/tensorflow-estimator/Manifest index 48fc8141992a..aa87ea3172f1 100644 --- a/sci-libs/tensorflow-estimator/Manifest +++ b/sci-libs/tensorflow-estimator/Manifest @@ -3,7 +3,11 @@ DIST bazelbuild-rules_cc-8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip 159656 BLA DIST bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip 9422 BLAKE2B bbc45c97551ee8126335b611ffca6574dac843d4db9b3221b10d26487f8eecfe38ba0cd67a4039a3ad921c25fea6294c43e4f4e7a57a060a30791acd6c4f9d39 SHA512 ba06242feb711e7fb6e821fd9ac029248b4f3e466fb1acf971d0db8196f3efe4d114ef137acbe4913073f8cbe8ccab4d47d8bafa21b867b2d6a6d57f5a647f0c DIST tensorflow-estimator-2.1.tar.gz 622792 BLAKE2B d1c8abb22d90c789ebfadaf78ca932f87428274afe6e1ac20670bf6d2b4c1c6ea8f367b1eb7ee64ff9f6e9b8ecdc2f64113924e7e2286e3f4e3d2c36cb101794 SHA512 4aaa21969299b02443e9396c238ef4c03af3bde1d0142a81c04d9706f18b02bfd125f3aaf8ffb47e0a3ffad949c3d3bca3909375f12a1c1e4c55ca1cc7930d51 DIST tensorflow-estimator-2.2.0.tar.gz 627362 BLAKE2B 125792fc2167b8af837a99b08a9a26943bc5c1fda8ab3690b01c0d49a6dd39142ff4a063867dfe1bee3b99fb018981d0e4ee45d194caac2cd96a829ad22db0ad SHA512 aaf743835e2c606439fcccb56742997e930ba0e72c01d51633ce86824bbfaacd64607dc1fd7fb9604cc444feb65ebae60c2266be084e1b49ef2a1a9ca5a3d60d +DIST tensorflow-estimator-2.3.0.tar.gz 642118 BLAKE2B 29ecf5b64da20e8e6981375f1631b9b7e8ad061f71d0a3f1ac567bcd04b02102c5854d24e5106660f6bcd7b4ca683bd3bfbde51f236669d0f17e8f847feb7039 SHA512 0befc9c04650a0cd91ce90bc2e9a5d17ae3f7d8d8e4b8f763f223bbb891c73c7e2cbe91a2779af36342008e16f02d118120d94165c6a8e3c14a723b32ee29cb0 +DIST tensorflow-estimator-2.4.0_rc0.tar.gz 660318 BLAKE2B d71988c29c237e686151627723890c623019ea8f3ff1bcdfde64fc29461f3ffd268feb6cee2d57535f45e48ab166331c93e8e48a4c323abc5f6ec08774c39d6a SHA512 1f0a4379e2da96e9ffc9c3a06291c885b0509e1a50806573e9cb15053b40a45aec4b9938356c450bb0abca88156c992c813037a8144cba8b584173d9e4fe5162 EBUILD tensorflow-estimator-2.1.ebuild 1853 BLAKE2B 13a0aa24ad860e69af5c8e180d939bd074c909bfcef47d5e9d16074cf010927f51bb64e6a48a7db00a5a817db70f4aa7071a32e89439b6864cc406a3cc13c59e SHA512 295825f9278094596f880fe69898791b00b68f71b4e7b6fd2efdb7357d2090ace62eb0d45b7b649f222544c789d8375bba73776a5428b587ba01367024af6615 EBUILD tensorflow-estimator-2.2.0-r1.ebuild 1978 BLAKE2B 790ff6c1a2facc9e5b652b346a9ad24b445494f156a90465d3fa278e49376122da03f182fd4264f2e1f17488f326353e58810122996fbd33b4deabb7ed1986b1 SHA512 419fdbe02e00fdabe285f122be8ac574181366fc5f48fcf56616a37c69867cf6b530ea7dae8f5cfd8c6114a1ccb945699e4e4674ea7a14ad4d6bc14619c6693c EBUILD tensorflow-estimator-2.2.0-r2.ebuild 1978 BLAKE2B 31f981c1afd0f9d9392480840e7af5cf77d8723c13aab512316f3a5b5817b18f9cc58153c33fe66ac6845c155b8c9564116dcc42996c04fd43e0475e0f9c074f SHA512 6e115396a5257a4be94741c2eae714389a4b75359cd7168021901745fa854063374f2fc3f6a3d4f2d54cb1dd98437fd0d5a8b143fa01a3043035180da92f9afc +EBUILD tensorflow-estimator-2.3.0.ebuild 1998 BLAKE2B bec6777c916d8da554c4c363a71d54295b2beb40e544363eb46e28f381a32798403b17bc0602539531be6a3d7ab323291cc2aa9f56954ee49dee42845579cedb SHA512 72f337563437517917bde7e3ad0d7d14ce93886009a1352a8b4d8bfe204059d1d0377c96c5dbbed24ff9aa41258f6a1ec204ea03a8683d4835e4b525bc2c3de2 +EBUILD tensorflow-estimator-2.4.0_rc0.ebuild 2014 BLAKE2B 85accbe649ffd9a39cc19446f3ae76cbe8e751ab1c699e1953bb477309bd86e99046ff1c387dfde7ab4f30019aa523d7859338171a9b08b3997d0c4566ff5d44 SHA512 b179e5a9d21ae4b9dbef83ea719ae2292a83308f74a5fe41428e2a2f6141edb77a47be0d46f1ba71e2affdc3a4caf2cd2b9f2f71e11dbce92505d9797a48731c MISC metadata.xml 580 BLAKE2B fb81098968d0fdf34a3f28dabee76df16be5393cb9ea79ee4fa670af985ef3f70bb83f14be84a0cc0e564e6626007c2977851f8299460b483f88325be155f4cc SHA512 6aef6523502a3bcf0b2ca59cf7480b92032b53020cccfa715203e5a48c960ecc92c94fa75f98a234da2d51662d43e0c1a85a1537f3ab67287cdb8183476a0efa diff --git a/sci-libs/tensorflow-estimator/tensorflow-estimator-2.3.0.ebuild b/sci-libs/tensorflow-estimator/tensorflow-estimator-2.3.0.ebuild new file mode 100644 index 000000000000..5fa7d1782c3a --- /dev/null +++ b/sci-libs/tensorflow-estimator/tensorflow-estimator-2.3.0.ebuild @@ -0,0 +1,75 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6,7,8} ) +MY_PN="estimator" +MY_PV=${PV/_rc/-rc} +MY_P=${MY_PN}-${MY_PV} + +inherit bazel distutils-r1 flag-o-matic toolchain-funcs + +DESCRIPTION="A high-level TensorFlow API that greatly simplifies machine learning programming" +HOMEPAGE="https://www.tensorflow.org/" + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +bazel_external_uris=" + https://github.com/bazelbuild/rules_cc/archive/0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip -> bazelbuild-rules_cc-0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip + https://github.com/bazelbuild/rules_cc/archive/8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip -> bazelbuild-rules_cc-8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip + https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip" + +SRC_URI="https://github.com/tensorflow/${MY_PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz + ${bazel_external_uris}" + +RDEPEND="sci-libs/tensorflow[python,${PYTHON_USEDEP}]" +DEPEND="${RDEPEND}" +BDEPEND=" + dev-java/java-config + >=dev-util/bazel-3" + +S="${WORKDIR}/${MY_P}" + +DOCS=( CONTRIBUTING.md README.md ) + +src_unpack() { + unpack "${P}.tar.gz" + bazel_load_distfiles "${bazel_external_uris}" +} + +src_prepare() { + bazel_setup_bazelrc + default + python_copy_sources +} + +src_compile() { + export JAVA_HOME=$(java-config --jre-home) + + do_compile() { + ebazel build //tensorflow_estimator/tools/pip_package:build_pip_package + ebazel shutdown + + local srcdir="${T}/src-${EPYTHON/./_}" + mkdir -p "${srcdir}" || die + bazel-bin/tensorflow_estimator/tools/pip_package/build_pip_package --src "${srcdir}" || die + } + + python_foreach_impl run_in_build_dir do_compile +} + +src_install() { + do_install() { + cd "${T}/src-${EPYTHON/./_}" || die + esetup.py install + python_optimize + } + python_foreach_impl do_install + + cd "${S}" || die + einstalldocs +} diff --git a/sci-libs/tensorflow-estimator/tensorflow-estimator-2.4.0_rc0.ebuild b/sci-libs/tensorflow-estimator/tensorflow-estimator-2.4.0_rc0.ebuild new file mode 100644 index 000000000000..1816ca18887a --- /dev/null +++ b/sci-libs/tensorflow-estimator/tensorflow-estimator-2.4.0_rc0.ebuild @@ -0,0 +1,76 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python3_{6,7,8} ) +MY_PN="estimator" +MY_PV=${PV/_rc/-rc} +MY_P=${MY_PN}-${MY_PV} + +inherit bazel distutils-r1 flag-o-matic toolchain-funcs + +DESCRIPTION="A high-level TensorFlow API that greatly simplifies machine learning programming" +HOMEPAGE="https://www.tensorflow.org/" + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +bazel_external_uris=" + https://github.com/bazelbuild/rules_cc/archive/0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip -> bazelbuild-rules_cc-0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip + https://github.com/bazelbuild/rules_cc/archive/8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip -> bazelbuild-rules_cc-8bd6cd75d03c01bb82561a96d9c1f9f7157b13d0.zip + https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip" + +SRC_URI="https://github.com/tensorflow/${MY_PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz + ${bazel_external_uris}" + +RDEPEND="sci-libs/tensorflow[python,${PYTHON_USEDEP}]" +DEPEND="${RDEPEND}" +BDEPEND=" + app-arch/unzip + dev-java/java-config + >=dev-util/bazel-3" + +S="${WORKDIR}/${MY_P}" + +DOCS=( CONTRIBUTING.md README.md ) + +src_unpack() { + unpack "${P}.tar.gz" + bazel_load_distfiles "${bazel_external_uris}" +} + +src_prepare() { + bazel_setup_bazelrc + default + python_copy_sources +} + +src_compile() { + export JAVA_HOME=$(java-config --jre-home) + + do_compile() { + ebazel build //tensorflow_estimator/tools/pip_package:build_pip_package + ebazel shutdown + + local srcdir="${T}/src-${EPYTHON/./_}" + mkdir -p "${srcdir}" || die + bazel-bin/tensorflow_estimator/tools/pip_package/build_pip_package --src "${srcdir}" || die + } + + python_foreach_impl run_in_build_dir do_compile +} + +src_install() { + do_install() { + cd "${T}/src-${EPYTHON/./_}" || die + esetup.py install + python_optimize + } + python_foreach_impl do_install + + cd "${S}" || die + einstalldocs +} diff --git a/sci-libs/tensorflow/Manifest b/sci-libs/tensorflow/Manifest index d72f93e2668f..894312f24e4b 100644 --- a/sci-libs/tensorflow/Manifest +++ b/sci-libs/tensorflow/Manifest @@ -1,40 +1,67 @@ DIST ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz 100612 BLAKE2B 84f81072d3298dde613b4c1ebabf852c67e04b5882a4ca0ed6f218b42e8fa3ea9598140b0c0009e8d6b62d08902622a6d57ee005ec3ad8a808c9fb21aa53430c SHA512 03a289d8099a5c4a5298cba8f516d2edb41220935d8db750970113ca7513372c78241c2c948d0ffcd60e84686e50ba1d7fd0b46efea6881dd320435eca92a7b9 +DIST OouraFFT-v1.0.tar.gz 110531 BLAKE2B de0e280407e21118e2bc6ca93a7caf3c4a49d0a13eda018b1497f98851af73dda4cef56460dba310336c7ed958e34feef4784ca2575a13287dec2c1ac9a5af6d SHA512 89c6e8fd57abf26351b3efb792008a1bbe62d404a4225dcae8aa666b3782a421be071bdc9760ebb0c95b5336ee5ea517d2fa43ab915045f7cf6fd76e73578079 DIST abseil-cpp-43ef2148c0936ebf7cb4be6b19927a9d9d145b8f.tar.gz 1281523 BLAKE2B 955802c74ed9baf222dcd824d2940147ae89edbc88f12bb8f54839776fe18bb18c0fde23b0d3142bb3be65a57930c96d03fdd243e8da07435eeb04329c31483d SHA512 c2ae1bd789251ec70cd0baafd92521e48fb1648aee8d9d84a8269436300848b6a9d7aead6bef8a12d3a9040f19535ac725ae961f12566500d309bc13dfee26a4 +DIST abseil-cpp-df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz 1679879 BLAKE2B ce92197c564ff774db46027c32f97cfd55ff1d77b7cec5424e127d10a3b0a54d9e84537bd643c4eb330ca81959bcc0316b13c013b229df06b7f415864c451e46 SHA512 b429758c37749d3d5c5c220fe0dc00fa0e193b406545484095339b25674c4a3bb7850b76dd1a370ed2006729bcbbbb1b438995b614e149c2290bdb10038c49d1 DIST backports.weakref-1.0rc1.tar.gz 7761 BLAKE2B 4cb2554a4b71bb1f8c41a790268511e4b382effc7e0328f74346d086de539a177111de9e2dabac19a44b2a1cdbf59a7425e30eee4caa4bfe66b0ca97f1f460a9 SHA512 f37e9eb0d9060d2e1588a941f623460bd4477d7e180b38b5cd46d9c1db1ee094ae63e4f5eeeb422823bf3d067f46c4124cb124a9e4ddb795bc0bfbc4802ab826 DIST bazel-skylib.0.8.0.tar.gz 72941 BLAKE2B 1928989d3e5dc338fee974c5592a524adb492db172b1d2a849ed5f14f91dbb76606335d369e4b15c4eec41adfe3a23cdc5b4f3b2f1351a5e9c25103c002b96a2 SHA512 4729941cedca8ddb876a621b28221d3c17dbb5dd72af27e55f48274208f21db986c5e7cb8adb742c42124bfa8073eb782b49e2557cb3f3f95ca56833fef925c0 DIST bazel-toolchains-92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz 660374 BLAKE2B 549292aa3ad8a6e01c29391a123f3cbc84d1f714ff9c68bfc6c8df07fa0ba3b19c22e61627f227a8a484f6d7d6c59935fd7560c447559ff5e774ddf1437eefe1 SHA512 83531a2646a9f63557eff6fefaf551ee7e9f0ccdb31374d7a17c35b9f9d844b9b405597972fcd31b2b68e9da312511bbfd9c8fbb75222f5924e1d2500cd1c2a6 DIST bazel_skylib-0.9.0.tar.gz 84644 BLAKE2B 40b69a524e632ea00d34b9cf805b882ac4c549dd465ef37f28e54729ff1b614a7610a4895cede4e0c938edba5b19f781f3c0bfdb62bde628ee0af21d6b679546 SHA512 af4bcb641fed05d15f2d0ffe0e3abdfe9c7a5deb9c53064992d6605d224ded1648b1bdfa293e161028913f9f2c178c68cc38bc16028892ca5b0f52b4e645209d +DIST bazelbuild-apple_support-501b4afb27745c4813a88ffa28acd901408014e4.tar.gz 19956 BLAKE2B 73f04a13f8ac3552e6f0770d1ac4edcc1b5ef46e4a3c4f3b83f11eeffa632f764d37aa7a98b35b5be6bd0caef19f84d0dc1b88bc55ff5397012863af4ee6d902 SHA512 732f482338996a62db24bfa6acd2fde6b629ac0a49317ed4e4778a55bbbbb22225f42a6cfa18cdcc51c200e29abe82a1f2a5548df09b7244074ae52e1f62ef66 DIST bazelbuild-apple_support.0.7.1.tar.gz 20070 BLAKE2B e72098fc5017e3371b6af0f33f392a42da18376052f30db5dd602c5ccc0176c1ac8002cca3f598845c5cb33406b4fd8d30c5ea47c69add6c530b75dc6566a4b0 SHA512 bbab25c229404123d7d424fa261480cf887c749ae729cc1a00bd6c2554d4b4b3fa81e0eaa670542b3a5d3301f3bd5dcd7727d011ba854f13dbbf4f65895e4b08 +DIST bazelbuild-rules_android-v0.1.1.zip 14654 BLAKE2B 1cfd5af08c6eab9602883f62d85ef1b9eb02383f73dcc31ae84af880c9ba228ae349ac6b017c550286e248347193e2c56eba30c86174432429809447dd940ed2 SHA512 80628a5e2ca9806ab031cd0c2f2999bd67f5621a83e8300a51fe6233373bdaf7c90ff8fa9551c81e60fc904c4d7b24554327ac8ed2ee101e92c4ab9319c53f4a +DIST bazelbuild-rules_apple-5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz 1951045 BLAKE2B d8c17f301de729bbf5254acacf89490ab1034b1180d5ea788251ae6ba3e2b704c82d7f66d33a086f52ce3909cd33df7739d7d536c6be070a2d3454e2f280517f SHA512 a23826d8e53d49de6347eca052e980878d50b431bf02c9b8333234c0659d5e290447121bf9519729639891e67d732474a3c3b7a7502752b32f830680bb334bad DIST bazelbuild-rules_apple.0.18.0.tar.gz 1333446 BLAKE2B c7667e05c236f4de44573707c795d31c980242a2ea6eb69261403e7b1b7cc852d899c9b76cba347df1b1006542f9d532d78586a3bf5f831d37f8f0c0cd79a8eb SHA512 209b21856642b03dc7d54c0c82826224167df7da4c6dda3d29490e0661cdfe35ad9abe763288e0ff80af4d681a361efb22e0ca45ead6fb96fd38f211bcb4435d DIST bazelbuild-rules_cc-01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip 171775 BLAKE2B ec0ece4555d779bc8380937baac517a8adf3b0176c4bfb1324943a91366ad9688f528a4bd69e4587bcc4ad427c71a53016a3e2d32a050d9d4ec99caac4967a8e SHA512 5c5e82f276c1c962fbd9c7ddf21df9aa4291f3285f3fa07cd2c2790475ccba670b0627fc3d6faedd1508eca4d80bdae64a31383f001f04f3031112be81c3e697 DIST bazelbuild-rules_cc-0d5f3f2768c6ca2faca0079a997a97ce22997a0c.zip 72534 BLAKE2B 0bbcc2b3fefb8df84d9f72b13da59c377fcd657ead378f85f80a587f8750302236212ae5c58819933015e62425126bead0733d2924a567fb9c5cb14fb75271a8 SHA512 1818c555504ba89afff88d75fe8b4e1386b3665a3ad477c26b4e9504c8f52f398b6aaedbad41a4ab8b8d9b3f86e0992e7c83a6da70241685d7b79ba177af1035 DIST bazelbuild-rules_closure-308b05b2419edb5c8ee0471b67a40403df940149.tar.gz 464906 BLAKE2B 033d76b8081f4f987e64875ad5c8e7b8f894ec6be58c52ee02c4d31d4480fee02f3f432ea9c4630ad3f5d1163f820aff37f6493da797ec51b148b361ab3c8b25 SHA512 2cd841f4530503ed31fa6425cb749ef29f8a1071b5d55594644303233e58455783cb02402bc23d7104ef036745733087d43075a1fcdab2ac96cd1a9872a6ea4a DIST bazelbuild-rules_docker-v0.10.0.tar.gz 549649 BLAKE2B e7a537b21138a5c5d9ce360e46238f57c917d2dbf5dd17887607402227cbe7c5d68aead9db0ecdb74c09eed9dac26eb86e004a9020c251152d15beb48be0e0d7 SHA512 7802107f8520c88646728800637cce54dbcefc54aa4361288a5b46e403e41998bc23e16fbe94f23a2ca52e5c33fc255af65846963c2fd0139ca1195435ce1b03 DIST bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip 9422 BLAKE2B bbc45c97551ee8126335b611ffca6574dac843d4db9b3221b10d26487f8eecfe38ba0cd67a4039a3ad921c25fea6294c43e4f4e7a57a060a30791acd6c4f9d39 SHA512 ba06242feb711e7fb6e821fd9ac029248b4f3e466fb1acf971d0db8196f3efe4d114ef137acbe4913073f8cbe8ccab4d47d8bafa21b867b2d6a6d57f5a647f0c +DIST bazelbuild-rules_proto-97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz 7612 BLAKE2B de9edd2e1f49edaec782cf58c4ebd3dc3c6d144499a18ac76a0685e28bb9fa6898980ea769c54186816dc696b2e9186d929e99602d8ea535409e1fd23b87da7b SHA512 dd2aef9011c6006e8adc777c211174c26ab74e3cf186541aba865012669ceebf7d96fa34a202654cdfb2beee4f67904f5b7736be466f2838cf31dfb3970f69cd DIST bazelbuild-rules_python-0.0.1.tar.gz 2302092 BLAKE2B 1db52eebf2461d779f764f2afdd070d1d0dd65eb2b83ccd98c2831da1784614ca281b114064729a9f257c64eceb62975aac8362d231c84f32abdf19aee7a1852 SHA512 40fa069a4482e2f83e29dc8e109652d14d187b2ec8efdcd36e98d117de93d66a938ed74999b42a2293fcb6eccc0a111cbbcf65c5c155579214bb1b96644280a5 +DIST bazelbuild-rules_swift-3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz 140484 BLAKE2B 2526d808a4763fffa16bb035de78993eefe6371a29139b152370081f548d8147868cc95194c06a54f1c5c0cd8b63ffbc59b00686bfaedede2463a448e38c2810 SHA512 e22a85a5dba52cc3474481798264571f6671aace19eecb058b24ac7d586ea7822ed3ae042b4a812671f81d4f9f8915aa2381fa6ac278da7969b976eaf28db636 DIST bazelbuild-rules_swift.0.12.1.tar.gz 111674 BLAKE2B 7c116d6098aa0725034dce4c83628c31c85c36a6331b44636deb2efe0f689a5baee8081b33d65e3727a83bca865bcabedd6f8fa1fdb60e901a9b60840c52c018 SHA512 6136feb3dc0074f82500000cf5335f046f21ea3a1edcb4dcb22228c82b56ed6a334e4b03e4e26a4d25549581abcf7df22b60a2bccf823a51bf270051fe18d489 DIST cub-1.8.0.zip 602396 BLAKE2B a5e302a52e04f85ae8e1836c59e799532a8b961a8d10c08fe1241c9045f88e31f1ebda6d26124b85c6df40968e1c7b3985a39961bf7614535aafcab2da1a576a SHA512 6167c5be94989f88e05a07508cf69cf2c6b22a5ac733804043daa46bd86a44a15a758b1ffb811bab28b82039d027516ed85b3d9f7677a740a7e00ec9c2f81aed +DIST cub-1.9.9.zip 619595 BLAKE2B 265b797a906b03da886de88863236c9ab90daa31498ddf848fcaf5e5ee1342614ad9a41618120ca09cc4c0da3e96eeec5e20ca9d7ba3f9860c507f06d15e59e1 SHA512 8c9c0a3f66f8d518ec07f857b5625e006d52f28bade1c1478a0f37420e2f7586dc3ff029d551748a1802bb5544b16fde5388e8d5a45d61eec595201b9db7a30d DIST dlpack-3efc489b55385936531a06ff83425b719387ec63.tar.gz 39637 BLAKE2B 532a3ce3d0e354a73c19433f0210a64ecbf00d9134d06a0ee7462baaff3f2b981524aa630cf250595671d6673105724482c7d69e803179aac247f2020c883bd0 SHA512 3728db5213e887fd946f64ba5dc0c336be9a72a0966ee83f146148749ffc93ddb342e0735df6117d7943874c18f87de5791a28e4a57ea420bb8a4e2a5b7338bc +DIST eigen-011e0db31d1bed8b7f73662be6d57d9f30fa457a.tar.gz 2667179 BLAKE2B 8e48418615ca95b27c26725c95f0b21202497284ea439ce1d799f1c86e80bc4fcd5951d9e476c9279e1a902da0b4ad029a73bb59ae8fb216508729803598a566 SHA512 cea21877a0aa1a0c1f0bde32494a3f4ffea6ae859d2562cb28c8aafacf009fc7754a110be1be3aa92f0959b7d7ab607768a579bf25a68972b14e30f613f2f54c +DIST eigen-386d809bde475c65b7940f290efe80e6a05878c4.tar.gz 2628283 BLAKE2B feac186ce8d18026b10be4955267ed65b65b4432f02bcf817da08960c9164bcb22b352c413f59890aac2de87c5e3e9e05ea48dff28635bc8901628af518dc4d2 SHA512 f183bfe235a98dc308c69a1d9e168b538cc92cfbbe35d4e35596b0b2588ecad66212efb3d3ffbba7c8adbd67be24cc4dda5dba8dcdd67245eca2b1a0fb94d380 DIST eigen-4e696901f873a2347f76d931cf2f701e31e15d05.tar.gz 2580537 BLAKE2B 927897c80f3529da40a76ddde26113403926d730fa4539aa9e4121406e8d3852abcfdbc55d178723300e9daa26176f6170db06bb49a59cb190e8c7e6dfdea4dd SHA512 d5461e615044aa94b6ac9ab2815536f4bdf2b9ccfeb578cc7bc62554ba928b4192450f72f1350f3231ed44d2bb90e95218de9a5d0bcee9ec02867499a6dc5db0 DIST eigen-52a2fbbb008a47c5e3fb8ac1c65c2feecb0c511c.tar.gz 2585583 BLAKE2B a2ce9da5f962f891cba748f46ce43667ae2b7fef54d4cc83411eafbc24b331e586c44fb135a2c3597c77fe62b0c8ff1172ae5ce6876f00ddd6f6ef2eca802d9c SHA512 65a73d26474547db83b9b40a133dd2a021e0f5a459104f63124461b4aac28bf3579dc81475441b3576901f28f704d6d4624939b22ecfbfbec896148c4c38da7c DIST farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz 467122 BLAKE2B 8b9dd426f4b9f732df6c8c09d868d1b1cc006c395b1525c46ea91c75318b723358c8e64bb0d86a73aace2032eded93f0d80cc7c2c77fddd6a39e3402ab4f2cb7 SHA512 7f5110514a8cdc7ce48d33fd94ad67d96a24e42e11b203e4d0986f4190545f051b2a63f8e09f2ac38c3aa4a5c62d9a0e02cd8ce02045037381fb62a99f0dcd00 DIST gemmlowp-12fed0cd7cfcd9e169bf1925bc3a7a58725fdcc3.zip 935628 BLAKE2B 09bd1dd1e367b1e5c4fe9a9525449c09460f19168bc03c57ad563aa27ec74a18f08b620a3dab6da4fa1a1448cdc7ce8bc8a089becc033b53fff4cc07593315ce SHA512 bd42a364f718f3b077cd9c840d626bfc1fd92ace98ce43329d8fa54700c9d28cb47568b6567e9b081b340af7be621c44be1ce06d4b8dccc4fb5d82c35b12f951 +DIST gemmlowp-fda83bdc38b118cc6b56753bd540caa49e570745.zip 936866 BLAKE2B 0977df121a80de979a9996b58a0a8cad157db8d0862b96f95b3be1157cddbc6b40dff4fc7da4ee78f5986cbfff2a67c173155e849e772ae476398c51f3028311 SHA512 4bf036de43f5e0890f66e0b16cd9a0f52911b160f79c9c50cf403454fa9d6040df225d34e02f424da8bb8c5f7f5c002f88f4d232c61503aa825c907ad8742823 DIST highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz 138574 BLAKE2B cecd95039fc31545ced38a1949e7cb31d6f34deef7c8923b573aa7a632576d0a9b60fd24fbc8a40b8a840a7d2442ea28382fe842178a77467772ed4ba8a2cfb6 SHA512 d25162ed266a8c9c00e6978fcf642cf924f03c0d196f971d0d6f6a3454ca7dfc82f758eabd038ac08e0a5dacc51eccb9b674f588f64692f37cb7a17150aefe4f DIST kissfft-36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz 44744 BLAKE2B aeea5d23c122417ddb70a44354890242c4fb61c456fba9af79054293a1355939af51a681760ac27be55423f888649fd2826e634422c7e9cb3749a9d7f50ef990 SHA512 30f4fcd351bbcb950a27e2a77ca100ccdfd37deb17a05e7e31c3e8f1c56d7c626ab81bbd7497484e6b512e41f7b1bed714722a194b2218c669b297911101df7b DIST llvm-387c3f74fd8efdc0be464b0e1a8033cc1eeb739c.tar.gz 115936989 BLAKE2B 624b4a898321e62002cbf3955f844755b3ba6b1c8acf9a310ddac19cf21f9627902eb0b3684e42bac1fe835be972322a5cc667f78a6e2b0e699f956e0cab81e8 SHA512 09ec39ec7a25703bbb47befb406be3de6d15232c971fa186e33dff80192876a827e35523a9782365e26a90abd42b32b9a2ee1443af71cc23cd825b3ff05df629 +DIST llvm-7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz 120301408 BLAKE2B 928117c2bae7bcdd2445e9f65297b45b009dfc62e9c16ed08a8f00aacee2497492b6fb4cbea0047a8aa1425b538e02af9b8e6dd21e52348cc45dfbb71ab3f47f SHA512 a9cfbd00a0530e4f5d001029c33be3723ed009799a42bd730a65319da671020a249ae5ba4496f1347a71a9ee69de4e9fe2b80c60ebd1bc4d6d4120bd3d6fecde DIST llvm-ecc999101aadc8dc7d4af9fd88be10fe42674aa0.tar.gz 115788302 BLAKE2B ea18d6cb3cc8311a78e543996d88831e1ecf1dec58b7c890a80cd8fce86e1c52244b9cfc0d7ce0867480465c2d914555c16cf003bfdcf90056d63e8f4e0ea0c0 SHA512 5422762ffe1022ad4588bcf2bdce1a041c37b5edffed70fcefdd911b2dbf8b52cba9ec57670d48d7b69be6b71e354d333d6eaa5ac5260df56ed8ab18fd98fe88 +DIST llvm-f402e682d0ef5598eeffc9a21a691b03e602ff58.tar.gz 127766458 BLAKE2B 7170f72e131ec672a1d81a8f33284568fc367608d2c5940b435a75cf8596dc71588c942c6d24c47a7e88c391b0c4030df6f18f6d1da15140587c8a9b078cd83c SHA512 6ebee8cece3845875d39678d7fe248c71e7c3463554bf345e03c06985afcdcd2a0052338358764ba366c7ecf72cd97703cb06613aeddec3110cf20c30eb70d25 DIST nvidia-nccl-0ceaec9cee96ae7658aa45686853286651f36384.tar.gz 107044 BLAKE2B fd018b1d40977add357e98382f41e3fa6456bdc9a181e2d6cc7a3bc7fb98d242b3216b5ed0c40323bbcc006ab5221b49819ebc1dccd0c8dd700d9504f085eed1 SHA512 e66f323abb68feeec41927cc23e3a85d82fd1b7105a6232626edba95acb9eb22b3fb8b28d1a7adb536c47c936f68271fe5d8f66d3059e3128608ad826dd7622e +DIST nvidia-nccl-195232556936b39b01cc908296e1650b80d4a3e9.tar.gz 147607 BLAKE2B 4109d195e646d5d492ff0533aea4d95fca59e5fb97aee0261c1b6d1f4615c1e6facb54b14bd4d1fc710b938c0edeca72b528e9e91e57d4bffa3b28af909449f4 SHA512 e45f0e07fdfdfc859f1e5ac05224977af821c99b0d9e11c71e9983612e621f55272a8836049ca61fe26f7663c4f8180102684143403ab46be73fbc8ba15e0c56 DIST nvidia-nccl-3701130b3c1bcdb01c14b3cb70fe52498c1e82b7.tar.gz 123898 BLAKE2B 9a268e089877fde9ac900b43bbf829f7dedfa701b017568647e3564670d5457dc18c96846a2cc8674b243c0c7d97d322e7466167c322588af3ad4f2d189b175b SHA512 9b090a963213eb088edf247e72b51a6cc79669f507831b88205c75a006a43f3d2257c4e75a34c33987c7d95c421e2273642db4c716b02907e8de1b1ef5d080f0 +DIST nvidia-nccl-5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz 147548 BLAKE2B f3d3dd222ae90ac9ac1457a9695f112a21f5652a5b40e10ac049da910f07707b1c3910f59734fbe5e2c6523c1e83f3801f809efa77d122a57e859828c74ba8c2 SHA512 d9ea83caf7940fb47134293236fcb7478c0d4e40365d3b0a29427758e2e2dbb980c5e8c05fc9fc3956ed5e21a82ec0efaa31d973fe9c73fa3f50465f76756131 DIST oourafft2d-20061228.tgz 54434 BLAKE2B 382dd5787155b877a2ad1d624596afb5dbbe146a7aedf044d7f016949deedac871a512a030b5e6ac9ea5310e216788ffb99af1dd9d2a0de3f1ad72d9e5e7a3db SHA512 af993f68e8e1eb3cb927a51e86da8f74cfafc912a7cd055515e50fe543dd19ab5a6f7b1c2be4a55d6f4a0e5d766ead34c3be4c5705be6353f78cb2a55bd5cf16 DIST pybind11-v2.3.0.tar.gz 564520 BLAKE2B a7c1485aa8f63a00eccd3103cf9f531a080b049be02e6182b30503ae6dd6c55fc517684ed9d92aaec244efd5f77336c68d1ea546833f7f0ae2fd7b090c19a02d SHA512 04542fe9dca2ffdb86c15698a4bbc041446a9f11970092e89a482ae0ff64c932f62fff8f437b98bdaa006c1fccabddd79f0c7e376f27daed2150b1d2f988e8aa +DIST pytorch-cpuinfo-6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip 3787039 BLAKE2B 3a529648d548b7570fd38783e5a3915bf3ad82ab028ee11f70fddaf09b8d64dc58f4d32ed54557b9f3087a8bb13ff4fd78b3597df6b1b5d3c3ef65c03193251a SHA512 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e42c484092f5e93dee11bc7c6a92ade3b63533d3507fa5a805b16e3508b8a20b7cff734197ab9d8e9b0e67e9648987ccedc19a23deea93bb00269d2fc65424a4 SHA512 d1b5a73feb4cced7ee49e9bacb80f437b0bcde204c3bc082a2729efb1989517ac97d764d6fe00bd66f0d5349d19d9e0593868c8d22369dc38732cd2204419b1d +DIST ruy-5bb02fbf90824c2eb6cd7418f766c593106a332b.zip 312653 BLAKE2B 57439930979de125ece2a2dec5e0813873866a167bd5b323b1bda2838def1b96e1925fca52eea9be851d15a99d0b43026be1f0d27cb9aa973b86891a480c3a8f SHA512 ed6bbc89fc44bd27b0bdca744d2c6822d7311045f99abf790c1ee0c9b3cbedbdb2d3f7098c55a6294890865050aaade3e6806c2c769c5827d4ac3eaaf81e5d44 DIST sobol_data-835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz 2569603 BLAKE2B cd66dc8a0b4ad3ea586a79ef588c8d68e4f05b6ea89e6d8119b5ee338b9046c11a747ca57c2f80a3c90fab119c05e85f5965571c9e522ccb8a312b95804d1a36 SHA512 b819d050bb38246b503f1eb3d6e7d878d0f166f3602ae3c327749b1f6ddc2b1d6ac7f768b1f1d055b98b7b98812e4643a75bcebc9728c7f615d67ca739761b3e DIST tensorflow-1.15.0-python-license.rst.txt 45132 BLAKE2B 8a8ace4b64fd9eda1932272704dd4fea002d2562cd9c2c94470d3ff5de58bb171ff849d3f998ea90cd779d1084d39af1267aca8400b74b701205d2e76e6a2628 SHA512 c79c42f4ceecf33c8f8778ca17b53595b75d5d0bdf30b11058cf01dd70a6351f530ca9dd846460aba14edc1d5876f7bf6fa0f9f49f7915590b0f54d267ce3856 DIST tensorflow-2.1.0.tar.gz 41637803 BLAKE2B 63aac95cdb71097d2e7a257a691a2b51703fb22d2535395494adebfae0d3f97f8dd9e0deaadf1c2f3d3d26138066a7c6fb9b9728b5b0ac3d54360d7b5e4bebff SHA512 6d09ba3c097e4b3d712e7164d649841572c418d56c207eea6d31e3b1851b84ce57e82801d9887d84cfd8fcf990a3ea4c4b4b05265f8d625509986412c230c3c6 DIST tensorflow-2.2.0.tar.gz 42100791 BLAKE2B 8b773ae9945ca267af33a34d86f6aef02310976bea1cdd98858d1405e8da845640b72a073b71fcfccb2b73f08600a5eada2c2332a8d9480bba71e9f25dbb2220 SHA512 94a2663497d333d543f363e9fea94fbcfdcdbbc0dfbaf009ba9181a808713aeb78f9b8805f56bea5fd3925a36f105427b3996795750589f378d8afbdadc2b86d +DIST tensorflow-2.3.1.tar.gz 46544608 BLAKE2B c3cb0954fcd060b95d63895cbeeca20f6af29ade999dc43db5fe010d6b33b6f650047d529f174a1663c23440a56e057e2f97c503a4a40bcdac9374b549f3220e SHA512 e497ef4564f50abf9f918be4522cf702f4cf945cb1ebf83af1386ac4ddc7373b3ba70c7f803f8ca06faf2c6b5396e60b1e0e9b97bfbd667e733b08b6e6d70ef0 +DIST tensorflow-2.4.0_rc1.tar.gz 53249752 BLAKE2B 14f4c1d37c9086485b768fa17c9cbdff2a5cb40bf4456aff8739b4ea224889551b08c02a7623866f2e7af3c7ec4a940de2b41cd64530ee4b47508e1747ad15db SHA512 38f06026dccff91c981e8ca0d1164f8f78710238184b6163e2e8ead26863fcf7daa074b1721114d0ee8efff127c42d94b65b696368ad91d74fcb81b5ef41a225 DIST tensorflow-patches-2.1.0.tar.bz2 5737 BLAKE2B 67f5004312389ed19e810aad9f2d5d4839d806b5a7422963520e0dff06b91346683647db757ac463af13ca70861a7ed9c94be242910abacc6be350e162947225 SHA512 a20bfb619d59e0d2741a27ce36e3d38dbb7a5a706d6bc56f8aa94b5b72288139ad301fc06390b128ef1c3a88b758d09d0224351590dedcda9c5309cc55af6fed DIST tensorflow-patches-2.2.0-r1.tar.bz2 3890 BLAKE2B cf4e0d579992cd09136fe3a11c5016e7b996ea959dad9f3a1ccff2fa623c2c4eab1c6673dfaf08b3b01220fd00c9edd5966e1162049f6d1e4fe5af280f491850 SHA512 8d07c9351b75faf90a137f65c2e6147d884744c5ab9b0bacadfa7bdc7b66ec2ec92920c7d23396bb70f7f4fb290f3f818591f23c6a4e91ab1a79290cb4ea1533 +DIST tensorflow-patches-2.3.1-r1.tar.bz2 12300 BLAKE2B 068c127d7e980baf63068c524c9411e4f19bb79ee369221cf474a964a15ad340b28bde09504a8d524167eea036caf9d2dc52d0ad7ae1e52a76d1892833b033a0 SHA512 510676e4f999c12331a61bfeeca45b2526292d8bca8b0b42c1d8d466bc52722075fbd4df26a5f67dbe1ca4ccd9059e783c113cf694b436ff48c8114c99234cd3 +DIST tensorflow-patches-2.3.1.tar.bz2 11361 BLAKE2B 22ddd827f616e33fd259ce2b7da5cda539d856701ad108d1d3b52d1dab660bcddc809fd9e9db5e6496552df080493b0205b83a58dc32808dc70c60a5878aa8af SHA512 cdfc3407c775f8529cb8eb939b1046a7094ff999b8225e419e2ab4be19ecba6d853ebd8cd2dda77a7f60425a440f4d60bf3afca4a80688f0cba9967e14f8b8fb +DIST tensorflow-patches-2.4.0_rc1.tar.bz2 1843 BLAKE2B 6d4188471502e4411a5a7a6e731142af38421961600c52e7d76d137f952a5b8327dc8d8b4a40b60d3fb46130fe3d40ae2adc3d60d9a882f9d9b07d424e45e194 SHA512 abf9fbd870a8fa59b9d4e1b8260c4fbb5badeeca3e2b77caa031036759302bccae4adf91b291bc7a12df3c679b887338a8cd98d41847eb8ddd0c2bf4b8ccf342 EBUILD tensorflow-2.1.0.ebuild 12365 BLAKE2B d895256b37ee79be36d83745545e6515366b64121c0bd5ec79544827a4492a327ca26593d06ec0b42745ef9bfa213a251eef2bd7c9093d8b461b744035d18cf7 SHA512 d710ea279a2e0b73749a0b4a947a98753e11a6ac14799b9d5e45e3e63afd776aa8047d44d66b831d49df686fea65f0663133f8639080f722fbbd6254d6025b46 EBUILD tensorflow-2.2.0-r1.ebuild 13506 BLAKE2B 075b271e2e559ca7640f1cb86f7392b4bd40a53d518d42f295ae762bcb465498b901fdd24805de76f8e50e5abacc1b47f00397553c471a7b5393ea8eb5dcb8fe SHA512 eb845b0233eab0782fc1213375b091a7a8be54df6796f46cae4863bcb4be92cd7028a30cacc43d9347bf04c14471283aaa0fbb6c56052fa0dd6cb6195b86ca94 EBUILD tensorflow-2.2.0-r2.ebuild 13634 BLAKE2B c165b9acc3d6d507582cd2fce0986147cd41efe3c5648c7b054fae17c2a0672e3e9fa54eae097618781a6b9a97a7c5c9e5f4f3feee7965b49df367c2d4046558 SHA512 68f1ec80071b447d0c9cd459a3cd369f6dd619432ae6fe44d85e51487d0209e4960505bc7eae26d0b21680e37c30b76b0a4eed97b84f831be54c7041ca31c86b +EBUILD tensorflow-2.3.1-r1.ebuild 15189 BLAKE2B e34ed5c8e554926f1b6441049b1f2368954e243dbe66f0ed1c0896f5c0eceb7b6613f2547b0a47b9493f08410d25813fbc800a3479138fe3e7f444f2d125f342 SHA512 4d46a272581266c1a905a675c1071b82027af7fcca3c86831eb2e9908cafa004da4fb399136568263e6aab7584025826c432dce86024cd34b59e1f7e8749da30 +EBUILD tensorflow-2.3.1.ebuild 15183 BLAKE2B 15f3de2530ffd1ea0c9e0383b0d90a2f0b7912ba62d497d56609ffa9be19df2e0f57304d6459a83b0a5e3bcb9410443656d8554595c3e5a2dd08803893c51467 SHA512 84ccd970c56eccdd9350fd56d4aeeffedbb1ad2e0be2fd58a416856f97b1d9f79ace4dffe41460fe6f2e6ae6d2030d7a3ee8720a99844fc3c97e23211cee50d7 +EBUILD tensorflow-2.4.0_rc1.ebuild 15113 BLAKE2B fa88f76a7c9e0a74ddbd0c5333b8b6542326853b6fda6fed186f9c98f0af09e05f1f036eda1081f9e008a37e41483b625986ed108269318e42d5c0ac4da6cebb SHA512 5b3f74a703dd1639175dd4d024e346b8d3068bc1f0d0516333d9efe8dccbd7d8106fa50be87fa1379cfc6adc00e6272e0209bee3e8334d66c1e5e4d66bc94b25 MISC metadata.xml 500 BLAKE2B 05036ab51828503c91b561bf087bb0a4d0cd6aa2f68dafa51499a5b57c33bf04e4f413aca576b62eb60b233467405a346c08d72b3c771b9f3fb4e099a55bd3c5 SHA512 ca5c67f8ced7d0f5ebb5f261c7adbcf23ea31b099e0aa3e1a3f6fd37df7d3558706af4df8411fc421a3b99c8615df7c5f07c617d7af275eccc728e76ce509458 diff --git a/sci-libs/tensorflow/tensorflow-2.3.1-r1.ebuild b/sci-libs/tensorflow/tensorflow-2.3.1-r1.ebuild new file mode 100644 index 000000000000..5ac893347dd6 --- /dev/null +++ b/sci-libs/tensorflow/tensorflow-2.3.1-r1.ebuild @@ -0,0 +1,405 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DISTUTILS_OPTIONAL=1 +PYTHON_COMPAT=( python3_{6,7,8} ) +DISTUTILS_USE_SETUPTOOLS=rdepend +MY_PV=${PV/_rc/-rc} +MY_P=${PN}-${MY_PV} + +inherit bazel check-reqs cuda distutils-r1 flag-o-matic prefix toolchain-funcs + +DESCRIPTION="Computation framework using data flow graphs for scalable machine learning" +HOMEPAGE="https://www.tensorflow.org/" + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="cuda mpi +python xla" +CPU_USE_FLAGS_X86="sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma3 fma4" +for i in $CPU_USE_FLAGS_X86; do + IUSE+=" cpu_flags_x86_$i" +done + +# distfiles that bazel uses for the workspace, will be copied to basel-distdir +bazel_external_uris=" + https://github.com/petewarden/OouraFFT/archive/v1.0.tar.gz -> OouraFFT-v1.0.tar.gz + https://gitlab.com/libeigen/eigen/-/archive/386d809bde475c65b7940f290efe80e6a05878c4/eigen-386d809bde475c65b7940f290efe80e6a05878c4.tar.gz + https://github.com/abseil/abseil-cpp/archive/df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz -> abseil-cpp-df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz + https://github.com/bazelbuild/bazel-skylib/releases/download/0.9.0/bazel_skylib-0.9.0.tar.gz + https://github.com/bazelbuild/rules_apple/archive/5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz -> bazelbuild-rules_apple-5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz + https://github.com/bazelbuild/rules_android/archive/v0.1.1.zip -> bazelbuild-rules_android-v0.1.1.zip + https://github.com/bazelbuild/apple_support/archive/501b4afb27745c4813a88ffa28acd901408014e4.tar.gz -> bazelbuild-apple_support-501b4afb27745c4813a88ffa28acd901408014e4.tar.gz + https://github.com/bazelbuild/bazel-toolchains/archive/92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz -> bazel-toolchains-92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz + https://github.com/bazelbuild/rules_cc/archive/01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip -> bazelbuild-rules_cc-01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip + https://github.com/bazelbuild/rules_closure/archive/308b05b2419edb5c8ee0471b67a40403df940149.tar.gz -> bazelbuild-rules_closure-308b05b2419edb5c8ee0471b67a40403df940149.tar.gz + https://github.com/bazelbuild/rules_docker/releases/download/v0.10.0/rules_docker-v0.10.0.tar.gz -> bazelbuild-rules_docker-v0.10.0.tar.gz + https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip + https://github.com/bazelbuild/rules_proto/archive/97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz -> bazelbuild-rules_proto-97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz + https://github.com/bazelbuild/rules_python/releases/download/0.0.1/rules_python-0.0.1.tar.gz -> bazelbuild-rules_python-0.0.1.tar.gz + https://github.com/bazelbuild/rules_swift/archive/3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz -> bazelbuild-rules_swift-3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz + https://github.com/dmlc/dlpack/archive/3efc489b55385936531a06ff83425b719387ec63.tar.gz -> dlpack-3efc489b55385936531a06ff83425b719387ec63.tar.gz + https://github.com/google/farmhash/archive/816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz -> farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz + https://github.com/google/gemmlowp/archive/fda83bdc38b118cc6b56753bd540caa49e570745.zip -> gemmlowp-fda83bdc38b118cc6b56753bd540caa49e570745.zip + https://github.com/google/highwayhash/archive/fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz -> highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz + https://github.com/google/re2/archive/506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz -> re2-506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz + https://github.com/joe-kuo/sobol_data/archive/835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz -> sobol_data-835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz + https://github.com/llvm/llvm-project/archive/7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz -> llvm-7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz + https://github.com/mborgerding/kissfft/archive/36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz -> kissfft-36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz + https://github.com/google/ruy/archive/34ea9f4993955fa1ff4eb58e504421806b7f2e8f.zip -> ruy-34ea9f4993955fa1ff4eb58e504421806b7f2e8f.zip + https://github.com/pytorch/cpuinfo/archive/d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz -> pytorch-cpuinfo-d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz + https://github.com/pytorch/cpuinfo/archive/6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip -> pytorch-cpuinfo-6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip + cuda? ( + https://github.com/nvidia/nccl/archive/5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz -> nvidia-nccl-5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz + https://github.com/NVlabs/cub/archive/1.8.0.zip -> cub-1.8.0.zip + ) + python? ( + https://github.com/intel/ARM_NEON_2_x86_SSE/archive/1200fe90bb174a6224a525ee60148671a786a71f.tar.gz -> ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz + https://storage.googleapis.com/mirror.tensorflow.org/docs.python.org/2.7/_sources/license.rst.txt -> tensorflow-1.15.0-python-license.rst.txt + https://pypi.python.org/packages/bc/cc/3cdb0a02e7e96f6c70bd971bc8a90b8463fda83e264fa9c5c1c98ceabd81/backports.weakref-1.0rc1.tar.gz + )" + +SRC_URI="https://github.com/${PN}/${PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz + https://dev.gentoo.org/~perfinion/patches/tensorflow-patches-${PVR}.tar.bz2 + ${bazel_external_uris}" + +RDEPEND=" + app-arch/snappy + dev-db/lmdb + dev-db/sqlite + dev-libs/double-conversion + dev-libs/icu:= + >=dev-libs/jsoncpp-1.9.2 + dev-libs/libpcre + dev-libs/nsync + dev-libs/openssl:0= + >=dev-libs/protobuf-3.8.0:= + >=dev-libs/re2-0.2019.06.01:= + media-libs/giflib + media-libs/libjpeg-turbo + media-libs/libpng:0 + >=net-libs/grpc-1.28:= + net-misc/curl + sys-libs/zlib + >=sys-apps/hwloc-2 + cuda? ( + || ( + ( =dev-util/nvidia-cuda-toolkit-10.2*[profiler] =dev-libs/cudnn-7* ) + ( =dev-util/nvidia-cuda-toolkit-10.1*[profiler] =dev-libs/cudnn-7* ) + ( =dev-util/nvidia-cuda-toolkit-10.0*[profiler] =dev-libs/cudnn-7.4* ) + ( =dev-util/nvidia-cuda-toolkit-9.2*[profiler] =dev-libs/cudnn-7.1* ) + ( =dev-util/nvidia-cuda-toolkit-9.1*[profiler] =dev-libs/cudnn-7.0* ) + ) + ) + mpi? ( virtual/mpi ) + python? ( + ${PYTHON_DEPS} + >=dev-libs/flatbuffers-1.12.0:= + dev-python/absl-py[${PYTHON_USEDEP}] + >=dev-python/astor-0.7.1[${PYTHON_USEDEP}] + dev-python/astunparse[${PYTHON_USEDEP}] + >=dev-python/gast-0.3.3[${PYTHON_USEDEP}] + dev-python/h5py[${PYTHON_USEDEP}] + >=dev-python/numpy-1.19[${PYTHON_USEDEP}] + >=dev-python/google-pasta-0.1.8[${PYTHON_USEDEP}] + dev-python/opt-einsum[${PYTHON_USEDEP}] + >=dev-python/protobuf-python-3.8.0[${PYTHON_USEDEP}] + dev-python/pybind11[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + dev-python/termcolor[${PYTHON_USEDEP}] + >=dev-python/grpcio-1.28[${PYTHON_USEDEP}] + >=dev-python/wrapt-1.11.1[${PYTHON_USEDEP}] + >=net-libs/google-cloud-cpp-0.10.0 + >=sci-libs/keras-applications-1.0.8[${PYTHON_USEDEP}] + >=sci-libs/keras-preprocessing-1.1.0[${PYTHON_USEDEP}] + >=sci-visualization/tensorboard-2.3.0[${PYTHON_USEDEP}] + dev-python/dill[${PYTHON_USEDEP}] + dev-python/tblib[${PYTHON_USEDEP}] + )" +DEPEND="${RDEPEND} + python? ( + dev-python/mock + dev-python/setuptools + )" +PDEPEND="python? ( + >=sci-libs/tensorflow-estimator-2.3.0[${PYTHON_USEDEP}] + )" +BDEPEND=" + app-arch/unzip + >=dev-libs/protobuf-3.8.0 + dev-java/java-config + dev-lang/swig + =dev-util/bazel-3* + cuda? ( + >=dev-util/nvidia-cuda-toolkit-9.1[profiler] + ) + !python? ( dev-lang/python ) + python? ( + dev-python/cython + dev-python/mock + >=dev-python/grpcio-tools-1.28 + )" +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +DOCS=( AUTHORS CONTRIBUTING.md ISSUE_TEMPLATE.md README.md RELEASE.md ) +CHECKREQS_MEMORY="5G" +CHECKREQS_DISK_BUILD="10G" + +get-cpu-flags() { + local i f=() + # Keep this list in sync with tensorflow/core/platform/cpu_feature_guard.cc. + for i in sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma4; do + use cpu_flags_x86_${i} && f+=( -m${i/_/.} ) + done + use cpu_flags_x86_fma3 && f+=( -mfma ) + echo "${f[*]}" +} + +pkg_setup() { + ewarn "TensorFlow 2.0 is a major release that contains some incompatibilities" + ewarn "with TensorFlow 1.x. For more information about migrating to TF2.0 see:" + ewarn "https://www.tensorflow.org/guide/migrate" + + local num_pythons_enabled + num_pythons_enabled=0 + count_impls(){ + num_pythons_enabled=$((${num_pythons_enabled} + 1)) + } + use python && python_foreach_impl count_impls + + # 10G to build C/C++ libs, 5G per python impl + CHECKREQS_DISK_BUILD="$((10 + 6 * ${num_pythons_enabled}))G" + check-reqs_pkg_setup +} + +src_unpack() { + # Only unpack the main distfile + unpack "${P}.tar.gz" + unpack tensorflow-patches-${PVR}.tar.bz2 + bazel_load_distfiles "${bazel_external_uris}" +} + +src_prepare() { + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + append-flags $(get-cpu-flags) + bazel_setup_bazelrc + + eapply "${WORKDIR}"/patches/*.patch + + # Relax version checks in setup.py + sed -i "/^ '/s/==/>=/g" tensorflow/tools/pip_package/setup.py || die + sed -i "/config_googleapis/d" WORKSPACE || die + + # Prefixify hard-coded command locations + hprefixify -w /host_compiler_prefix/ third_party/gpus/cuda_configure.bzl + + default + use python && python_copy_sources + + use cuda && cuda_add_sandbox +} + +src_configure() { + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + do_configure() { + export CC_OPT_FLAGS=" " + export TF_ENABLE_XLA=$(usex xla 1 0) + export TF_NEED_OPENCL_SYCL=0 + export TF_NEED_OPENCL=0 + export TF_NEED_COMPUTECPP=0 + export TF_NEED_ROCM=0 + export TF_NEED_MPI=$(usex mpi 1 0) + export TF_SET_ANDROID_WORKSPACE=0 + + if use python; then + export PYTHON_BIN_PATH="${PYTHON}" + export PYTHON_LIB_PATH="$(python_get_sitedir)" + else + export PYTHON_BIN_PATH="$(which python)" + export PYTHON_LIB_PATH="$(python -c 'from distutils.sysconfig import *; print(get_python_lib())')" + fi + + export TF_NEED_CUDA=$(usex cuda 1 0) + export TF_DOWNLOAD_CLANG=0 + export TF_CUDA_CLANG=0 + export TF_NEED_TENSORRT=0 + if use cuda; then + export TF_CUDA_PATHS="${EPREFIX}/opt/cuda" + export GCC_HOST_COMPILER_PATH="$(cuda_gccdir)/$(tc-getCC)" + export TF_CUDA_VERSION="$(cuda_toolkit_version)" + export TF_CUDNN_VERSION="$(cuda_cudnn_version)" + einfo "Setting CUDA version: $TF_CUDA_VERSION" + einfo "Setting CUDNN version: $TF_CUDNN_VERSION" + + if [[ *$(gcc-version)* != $(cuda-config -s) ]]; then + ewarn "TensorFlow is being built with Nvidia CUDA support. Your default compiler" + ewarn "version is not supported by the currently installed CUDA. TensorFlow will" + ewarn "instead be compiled using: ${GCC_HOST_COMPILER_PATH}." + ewarn "If the build fails with linker errors try rebuilding the relevant" + ewarn "dependencies using the same compiler version." + fi + + if [[ -z "$TF_CUDA_COMPUTE_CAPABILITIES" ]]; then + ewarn "WARNING: Tensorflow is being built with its default CUDA compute capabilities: 3.5 and 7.0." + ewarn "These may not be optimal for your GPU." + ewarn "" + ewarn "To configure Tensorflow with the CUDA compute capability that is optimal for your GPU," + ewarn "set TF_CUDA_COMPUTE_CAPABILITIES in your make.conf, and re-emerge tensorflow." + ewarn "For example, to use CUDA capability 7.5 & 3.5, add: TF_CUDA_COMPUTE_CAPABILITIES=7.5,3.5" + ewarn "" + ewarn "You can look up your GPU's CUDA compute capability at https://developer.nvidia.com/cuda-gpus" + ewarn "or by running /opt/cuda/extras/demo_suite/deviceQuery | grep 'CUDA Capability'" + fi + fi + + # com_googlesource_code_re2 weird branch using absl, doesnt work with released re2 + local SYSLIBS=( + absl_py + astor_archive + astunparse_archive + boringssl + com_github_googleapis_googleapis + com_github_googlecloudplatform_google_cloud_cpp + com_github_grpc_grpc + com_google_protobuf + curl + cython + dill_archive + double_conversion + enum34_archive + flatbuffers + functools32_archive + gast_archive + gif + hwloc + icu + jsoncpp_git + libjpeg_turbo + lmdb + nasm + nsync + opt_einsum_archive + org_sqlite + pasta + pcre + png + pybind11 + six_archive + snappy + swig + tblib_archive + termcolor_archive + wrapt + zlib + ) + + export TF_SYSTEM_LIBS="${SYSLIBS[@]}" + export TF_IGNORE_MAX_BAZEL_VERSION=1 + + # This is not autoconf + ./configure || die + + echo 'build --config=noaws --config=nohdfs' >> .bazelrc || die + echo 'build --define tensorflow_mkldnn_contraction_kernel=0' >> .bazelrc || die + + for cflag in $(pkg-config jsoncpp --cflags) + do + echo "build --copt=\"$cflag\"" >> .bazelrc || die + echo "build --host_copt=\"$cflag\"" >> .bazelrc || die + done + } + if use python; then + python_foreach_impl run_in_build_dir do_configure + else + do_configure + fi +} + +src_compile() { + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + if use python; then + python_setup + BUILD_DIR="${S}-${EPYTHON/./_}" + cd "${BUILD_DIR}" + fi + + # fail early if any deps are missing + ebazel build -k --nobuild \ + //tensorflow:libtensorflow_framework.so \ + //tensorflow:libtensorflow.so \ + //tensorflow:libtensorflow_cc.so \ + $(usex python '//tensorflow/tools/pip_package:build_pip_package' '') + + ebazel build \ + //tensorflow:libtensorflow_framework.so \ + //tensorflow:libtensorflow.so + ebazel build //tensorflow:libtensorflow_cc.so + + do_compile() { + ebazel build //tensorflow/tools/pip_package:build_pip_package + } + BUILD_DIR="${S}" + cd "${BUILD_DIR}" + use python && python_foreach_impl run_in_build_dir do_compile + ebazel shutdown +} + +src_install() { + local i j + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + do_install() { + einfo "Installing ${EPYTHON} files" + local srcdir="${T}/src-${MULTIBUILD_VARIANT}" + mkdir -p "${srcdir}" || die + bazel-bin/tensorflow/tools/pip_package/build_pip_package --src "${srcdir}" || die + cd "${srcdir}" || die + esetup.py install + + # libtensorflow_framework.so is in /usr/lib already + rm -f "${D}/$(python_get_sitedir)"/${PN}/lib${PN}_framework.so* || die + rm -f "${D}/$(python_get_sitedir)"/${PN}_core/lib${PN}_framework.so* || die + python_optimize + } + + if use python; then + python_foreach_impl run_in_build_dir do_install + + # Symlink to python-exec scripts + for i in "${ED}"/usr/lib/python-exec/*/*; do + n="${i##*/}" + [[ -e "${ED}/usr/bin/${n}" ]] || dosym ../lib/python-exec/python-exec2 "/usr/bin/${n}" + done + + python_setup + local BUILD_DIR="${S}-${EPYTHON/./_}" + cd "${BUILD_DIR}" || die + fi + + einfo "Installing headers" + ebazel build //tensorflow:install_headers + ebazel shutdown + insinto /usr/include/${PN}/ + doins -r bazel-bin/tensorflow/include/* + + einfo "Installing libs" + # Generate pkg-config file + ${PN}/c/generate-pc.sh --prefix="${EPREFIX}"/usr --libdir=$(get_libdir) --version=${MY_PV} || die + insinto /usr/$(get_libdir)/pkgconfig + doins ${PN}.pc ${PN}_cc.pc + + for l in libtensorflow{,_framework,_cc}.so; do + dolib.so bazel-bin/tensorflow/${l} + dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1) + dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1-3) + done + + einstalldocs +} diff --git a/sci-libs/tensorflow/tensorflow-2.3.1.ebuild b/sci-libs/tensorflow/tensorflow-2.3.1.ebuild new file mode 100644 index 000000000000..657eb270e10f --- /dev/null +++ b/sci-libs/tensorflow/tensorflow-2.3.1.ebuild @@ -0,0 +1,405 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DISTUTILS_OPTIONAL=1 +PYTHON_COMPAT=( python3_{6,7,8} ) +DISTUTILS_USE_SETUPTOOLS=rdepend +MY_PV=${PV/_rc/-rc} +MY_P=${PN}-${MY_PV} + +inherit bazel check-reqs cuda distutils-r1 flag-o-matic prefix toolchain-funcs + +DESCRIPTION="Computation framework using data flow graphs for scalable machine learning" +HOMEPAGE="https://www.tensorflow.org/" + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="cuda mpi +python xla" +CPU_USE_FLAGS_X86="sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma3 fma4" +for i in $CPU_USE_FLAGS_X86; do + IUSE+=" cpu_flags_x86_$i" +done + +# distfiles that bazel uses for the workspace, will be copied to basel-distdir +bazel_external_uris=" + https://github.com/petewarden/OouraFFT/archive/v1.0.tar.gz -> OouraFFT-v1.0.tar.gz + https://gitlab.com/libeigen/eigen/-/archive/386d809bde475c65b7940f290efe80e6a05878c4/eigen-386d809bde475c65b7940f290efe80e6a05878c4.tar.gz + https://github.com/abseil/abseil-cpp/archive/df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz -> abseil-cpp-df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz + https://github.com/bazelbuild/bazel-skylib/releases/download/0.9.0/bazel_skylib-0.9.0.tar.gz + https://github.com/bazelbuild/rules_apple/archive/5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz -> bazelbuild-rules_apple-5131f3d46794bf227d296c82f30c2499c9de3c5b.tar.gz + https://github.com/bazelbuild/rules_android/archive/v0.1.1.zip -> bazelbuild-rules_android-v0.1.1.zip + https://github.com/bazelbuild/apple_support/archive/501b4afb27745c4813a88ffa28acd901408014e4.tar.gz -> bazelbuild-apple_support-501b4afb27745c4813a88ffa28acd901408014e4.tar.gz + https://github.com/bazelbuild/bazel-toolchains/archive/92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz -> bazel-toolchains-92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz + https://github.com/bazelbuild/rules_cc/archive/01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip -> bazelbuild-rules_cc-01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip + https://github.com/bazelbuild/rules_closure/archive/308b05b2419edb5c8ee0471b67a40403df940149.tar.gz -> bazelbuild-rules_closure-308b05b2419edb5c8ee0471b67a40403df940149.tar.gz + https://github.com/bazelbuild/rules_docker/releases/download/v0.10.0/rules_docker-v0.10.0.tar.gz -> bazelbuild-rules_docker-v0.10.0.tar.gz + https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip + https://github.com/bazelbuild/rules_proto/archive/97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz -> bazelbuild-rules_proto-97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz + https://github.com/bazelbuild/rules_python/releases/download/0.0.1/rules_python-0.0.1.tar.gz -> bazelbuild-rules_python-0.0.1.tar.gz + https://github.com/bazelbuild/rules_swift/archive/3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz -> bazelbuild-rules_swift-3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz + https://github.com/dmlc/dlpack/archive/3efc489b55385936531a06ff83425b719387ec63.tar.gz -> dlpack-3efc489b55385936531a06ff83425b719387ec63.tar.gz + https://github.com/google/farmhash/archive/816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz -> farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz + https://github.com/google/gemmlowp/archive/fda83bdc38b118cc6b56753bd540caa49e570745.zip -> gemmlowp-fda83bdc38b118cc6b56753bd540caa49e570745.zip + https://github.com/google/highwayhash/archive/fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz -> highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz + https://github.com/google/re2/archive/506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz -> re2-506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz + https://github.com/joe-kuo/sobol_data/archive/835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz -> sobol_data-835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz + https://github.com/llvm/llvm-project/archive/7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz -> llvm-7e825abd5704ce28b166f9463d4bd304348fd2a9.tar.gz + https://github.com/mborgerding/kissfft/archive/36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz -> kissfft-36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz + https://github.com/google/ruy/archive/34ea9f4993955fa1ff4eb58e504421806b7f2e8f.zip -> ruy-34ea9f4993955fa1ff4eb58e504421806b7f2e8f.zip + https://github.com/pytorch/cpuinfo/archive/d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz -> pytorch-cpuinfo-d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz + https://github.com/pytorch/cpuinfo/archive/6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip -> pytorch-cpuinfo-6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip + cuda? ( + https://github.com/nvidia/nccl/archive/5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz -> nvidia-nccl-5949d96f36d050e59d05872f8bbffd2549318e95.tar.gz + https://github.com/NVlabs/cub/archive/1.8.0.zip -> cub-1.8.0.zip + ) + python? ( + https://github.com/intel/ARM_NEON_2_x86_SSE/archive/1200fe90bb174a6224a525ee60148671a786a71f.tar.gz -> ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz + https://storage.googleapis.com/mirror.tensorflow.org/docs.python.org/2.7/_sources/license.rst.txt -> tensorflow-1.15.0-python-license.rst.txt + https://pypi.python.org/packages/bc/cc/3cdb0a02e7e96f6c70bd971bc8a90b8463fda83e264fa9c5c1c98ceabd81/backports.weakref-1.0rc1.tar.gz + )" + +SRC_URI="https://github.com/${PN}/${PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz + https://dev.gentoo.org/~perfinion/patches/tensorflow-patches-${PVR}.tar.bz2 + ${bazel_external_uris}" + +RDEPEND=" + app-arch/snappy + dev-db/lmdb + dev-db/sqlite + dev-libs/double-conversion + dev-libs/icu + >=dev-libs/jsoncpp-1.9.2 + dev-libs/libpcre + dev-libs/nsync + dev-libs/openssl:0= + >=dev-libs/protobuf-3.8.0:= + >=dev-libs/re2-0.2019.06.01 + media-libs/giflib + media-libs/libjpeg-turbo + media-libs/libpng:0 + >=net-libs/grpc-1.28 + net-misc/curl + sys-libs/zlib + >=sys-apps/hwloc-2 + cuda? ( + || ( + ( =dev-util/nvidia-cuda-toolkit-10.2*[profiler] =dev-libs/cudnn-7* ) + ( =dev-util/nvidia-cuda-toolkit-10.1*[profiler] =dev-libs/cudnn-7* ) + ( =dev-util/nvidia-cuda-toolkit-10.0*[profiler] =dev-libs/cudnn-7.4* ) + ( =dev-util/nvidia-cuda-toolkit-9.2*[profiler] =dev-libs/cudnn-7.1* ) + ( =dev-util/nvidia-cuda-toolkit-9.1*[profiler] =dev-libs/cudnn-7.0* ) + ) + ) + mpi? ( virtual/mpi ) + python? ( + ${PYTHON_DEPS} + >=dev-libs/flatbuffers-1.12.0:= + dev-python/absl-py[${PYTHON_USEDEP}] + >=dev-python/astor-0.7.1[${PYTHON_USEDEP}] + dev-python/astunparse[${PYTHON_USEDEP}] + >=dev-python/gast-0.3.3[${PYTHON_USEDEP}] + dev-python/h5py[${PYTHON_USEDEP}] + >=dev-python/numpy-1.19[${PYTHON_USEDEP}] + >=dev-python/google-pasta-0.1.8[${PYTHON_USEDEP}] + dev-python/opt-einsum[${PYTHON_USEDEP}] + >=dev-python/protobuf-python-3.8.0[${PYTHON_USEDEP}] + dev-python/pybind11[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + dev-python/termcolor[${PYTHON_USEDEP}] + >=dev-python/grpcio-1.28[${PYTHON_USEDEP}] + >=dev-python/wrapt-1.11.1[${PYTHON_USEDEP}] + >=net-libs/google-cloud-cpp-0.10.0 + >=sci-libs/keras-applications-1.0.8[${PYTHON_USEDEP}] + >=sci-libs/keras-preprocessing-1.1.0[${PYTHON_USEDEP}] + >=sci-visualization/tensorboard-2.3.0[${PYTHON_USEDEP}] + dev-python/dill[${PYTHON_USEDEP}] + dev-python/tblib[${PYTHON_USEDEP}] + )" +DEPEND="${RDEPEND} + python? ( + dev-python/mock + dev-python/setuptools + )" +PDEPEND="python? ( + >=sci-libs/tensorflow-estimator-2.3.0[${PYTHON_USEDEP}] + )" +BDEPEND=" + app-arch/unzip + >=dev-libs/protobuf-3.8.0 + dev-java/java-config + dev-lang/swig + =dev-util/bazel-3* + cuda? ( + >=dev-util/nvidia-cuda-toolkit-9.1[profiler] + ) + !python? ( dev-lang/python ) + python? ( + dev-python/cython + dev-python/mock + >=dev-python/grpcio-tools-1.28 + )" +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +DOCS=( AUTHORS CONTRIBUTING.md ISSUE_TEMPLATE.md README.md RELEASE.md ) +CHECKREQS_MEMORY="5G" +CHECKREQS_DISK_BUILD="10G" + +get-cpu-flags() { + local i f=() + # Keep this list in sync with tensorflow/core/platform/cpu_feature_guard.cc. + for i in sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma4; do + use cpu_flags_x86_${i} && f+=( -m${i/_/.} ) + done + use cpu_flags_x86_fma3 && f+=( -mfma ) + echo "${f[*]}" +} + +pkg_setup() { + ewarn "TensorFlow 2.0 is a major release that contains some incompatibilities" + ewarn "with TensorFlow 1.x. For more information about migrating to TF2.0 see:" + ewarn "https://www.tensorflow.org/guide/migrate" + + local num_pythons_enabled + num_pythons_enabled=0 + count_impls(){ + num_pythons_enabled=$((${num_pythons_enabled} + 1)) + } + use python && python_foreach_impl count_impls + + # 10G to build C/C++ libs, 5G per python impl + CHECKREQS_DISK_BUILD="$((10 + 6 * ${num_pythons_enabled}))G" + check-reqs_pkg_setup +} + +src_unpack() { + # Only unpack the main distfile + unpack "${P}.tar.gz" + unpack tensorflow-patches-${PVR}.tar.bz2 + bazel_load_distfiles "${bazel_external_uris}" +} + +src_prepare() { + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + append-flags $(get-cpu-flags) + bazel_setup_bazelrc + + eapply "${WORKDIR}"/patches/*.patch + + # Relax version checks in setup.py + sed -i "/^ '/s/==/>=/g" tensorflow/tools/pip_package/setup.py || die + sed -i "/config_googleapis/d" WORKSPACE || die + + # Prefixify hard-coded command locations + hprefixify -w /host_compiler_prefix/ third_party/gpus/cuda_configure.bzl + + default + use python && python_copy_sources + + use cuda && cuda_add_sandbox +} + +src_configure() { + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + do_configure() { + export CC_OPT_FLAGS=" " + export TF_ENABLE_XLA=$(usex xla 1 0) + export TF_NEED_OPENCL_SYCL=0 + export TF_NEED_OPENCL=0 + export TF_NEED_COMPUTECPP=0 + export TF_NEED_ROCM=0 + export TF_NEED_MPI=$(usex mpi 1 0) + export TF_SET_ANDROID_WORKSPACE=0 + + if use python; then + export PYTHON_BIN_PATH="${PYTHON}" + export PYTHON_LIB_PATH="$(python_get_sitedir)" + else + export PYTHON_BIN_PATH="$(which python)" + export PYTHON_LIB_PATH="$(python -c 'from distutils.sysconfig import *; print(get_python_lib())')" + fi + + export TF_NEED_CUDA=$(usex cuda 1 0) + export TF_DOWNLOAD_CLANG=0 + export TF_CUDA_CLANG=0 + export TF_NEED_TENSORRT=0 + if use cuda; then + export TF_CUDA_PATHS="${EPREFIX}/opt/cuda" + export GCC_HOST_COMPILER_PATH="$(cuda_gccdir)/$(tc-getCC)" + export TF_CUDA_VERSION="$(cuda_toolkit_version)" + export TF_CUDNN_VERSION="$(cuda_cudnn_version)" + einfo "Setting CUDA version: $TF_CUDA_VERSION" + einfo "Setting CUDNN version: $TF_CUDNN_VERSION" + + if [[ *$(gcc-version)* != $(cuda-config -s) ]]; then + ewarn "TensorFlow is being built with Nvidia CUDA support. Your default compiler" + ewarn "version is not supported by the currently installed CUDA. TensorFlow will" + ewarn "instead be compiled using: ${GCC_HOST_COMPILER_PATH}." + ewarn "If the build fails with linker errors try rebuilding the relevant" + ewarn "dependencies using the same compiler version." + fi + + if [[ -z "$TF_CUDA_COMPUTE_CAPABILITIES" ]]; then + ewarn "WARNING: Tensorflow is being built with its default CUDA compute capabilities: 3.5 and 7.0." + ewarn "These may not be optimal for your GPU." + ewarn "" + ewarn "To configure Tensorflow with the CUDA compute capability that is optimal for your GPU," + ewarn "set TF_CUDA_COMPUTE_CAPABILITIES in your make.conf, and re-emerge tensorflow." + ewarn "For example, to use CUDA capability 7.5 & 3.5, add: TF_CUDA_COMPUTE_CAPABILITIES=7.5,3.5" + ewarn "" + ewarn "You can look up your GPU's CUDA compute capability at https://developer.nvidia.com/cuda-gpus" + ewarn "or by running /opt/cuda/extras/demo_suite/deviceQuery | grep 'CUDA Capability'" + fi + fi + + # com_googlesource_code_re2 weird branch using absl, doesnt work with released re2 + local SYSLIBS=( + absl_py + astor_archive + astunparse_archive + boringssl + com_github_googleapis_googleapis + com_github_googlecloudplatform_google_cloud_cpp + com_github_grpc_grpc + com_google_protobuf + curl + cython + dill_archive + double_conversion + enum34_archive + flatbuffers + functools32_archive + gast_archive + gif + hwloc + icu + jsoncpp_git + libjpeg_turbo + lmdb + nasm + nsync + opt_einsum_archive + org_sqlite + pasta + pcre + png + pybind11 + six_archive + snappy + swig + tblib_archive + termcolor_archive + wrapt + zlib + ) + + export TF_SYSTEM_LIBS="${SYSLIBS[@]}" + export TF_IGNORE_MAX_BAZEL_VERSION=1 + + # This is not autoconf + ./configure || die + + echo 'build --config=noaws --config=nohdfs' >> .bazelrc || die + echo 'build --define tensorflow_mkldnn_contraction_kernel=0' >> .bazelrc || die + + for cflag in $(pkg-config jsoncpp --cflags) + do + echo "build --copt=\"$cflag\"" >> .bazelrc || die + echo "build --host_copt=\"$cflag\"" >> .bazelrc || die + done + } + if use python; then + python_foreach_impl run_in_build_dir do_configure + else + do_configure + fi +} + +src_compile() { + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + if use python; then + python_setup + BUILD_DIR="${S}-${EPYTHON/./_}" + cd "${BUILD_DIR}" + fi + + # fail early if any deps are missing + ebazel build -k --nobuild \ + //tensorflow:libtensorflow_framework.so \ + //tensorflow:libtensorflow.so \ + //tensorflow:libtensorflow_cc.so \ + $(usex python '//tensorflow/tools/pip_package:build_pip_package' '') + + ebazel build \ + //tensorflow:libtensorflow_framework.so \ + //tensorflow:libtensorflow.so + ebazel build //tensorflow:libtensorflow_cc.so + + do_compile() { + ebazel build //tensorflow/tools/pip_package:build_pip_package + } + BUILD_DIR="${S}" + cd "${BUILD_DIR}" + use python && python_foreach_impl run_in_build_dir do_compile + ebazel shutdown +} + +src_install() { + local i j + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + do_install() { + einfo "Installing ${EPYTHON} files" + local srcdir="${T}/src-${MULTIBUILD_VARIANT}" + mkdir -p "${srcdir}" || die + bazel-bin/tensorflow/tools/pip_package/build_pip_package --src "${srcdir}" || die + cd "${srcdir}" || die + esetup.py install + + # libtensorflow_framework.so is in /usr/lib already + rm -f "${D}/$(python_get_sitedir)"/${PN}/lib${PN}_framework.so* || die + rm -f "${D}/$(python_get_sitedir)"/${PN}_core/lib${PN}_framework.so* || die + python_optimize + } + + if use python; then + python_foreach_impl run_in_build_dir do_install + + # Symlink to python-exec scripts + for i in "${ED}"/usr/lib/python-exec/*/*; do + n="${i##*/}" + [[ -e "${ED}/usr/bin/${n}" ]] || dosym ../lib/python-exec/python-exec2 "/usr/bin/${n}" + done + + python_setup + local BUILD_DIR="${S}-${EPYTHON/./_}" + cd "${BUILD_DIR}" || die + fi + + einfo "Installing headers" + ebazel build //tensorflow:install_headers + ebazel shutdown + insinto /usr/include/${PN}/ + doins -r bazel-bin/tensorflow/include/* + + einfo "Installing libs" + # Generate pkg-config file + ${PN}/c/generate-pc.sh --prefix="${EPREFIX}"/usr --libdir=$(get_libdir) --version=${MY_PV} || die + insinto /usr/$(get_libdir)/pkgconfig + doins ${PN}.pc ${PN}_cc.pc + + for l in libtensorflow{,_framework,_cc}.so; do + dolib.so bazel-bin/tensorflow/${l} + dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1) + dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1-3) + done + + einstalldocs +} diff --git a/sci-libs/tensorflow/tensorflow-2.4.0_rc1.ebuild b/sci-libs/tensorflow/tensorflow-2.4.0_rc1.ebuild new file mode 100644 index 000000000000..1481f3084184 --- /dev/null +++ b/sci-libs/tensorflow/tensorflow-2.4.0_rc1.ebuild @@ -0,0 +1,406 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DISTUTILS_OPTIONAL=1 +PYTHON_COMPAT=( python3_{6,7,8} ) +DISTUTILS_USE_SETUPTOOLS=rdepend +MY_PV=${PV/_rc/-rc} +MY_P=${PN}-${MY_PV} + +inherit bazel check-reqs cuda distutils-r1 flag-o-matic prefix toolchain-funcs + +DESCRIPTION="Computation framework using data flow graphs for scalable machine learning" +HOMEPAGE="https://www.tensorflow.org/" + +LICENSE="Apache-2.0" +SLOT="0" +KEYWORDS="~amd64" +IUSE="cuda mpi +python xla" +CPU_USE_FLAGS_X86="sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma3 fma4" +for i in $CPU_USE_FLAGS_X86; do + IUSE+=" cpu_flags_x86_$i" +done + +# distfiles that bazel uses for the workspace, will be copied to basel-distdir +bazel_external_uris=" + https://github.com/petewarden/OouraFFT/archive/v1.0.tar.gz -> OouraFFT-v1.0.tar.gz + https://gitlab.com/libeigen/eigen/-/archive/011e0db31d1bed8b7f73662be6d57d9f30fa457a/eigen-011e0db31d1bed8b7f73662be6d57d9f30fa457a.tar.gz + https://github.com/abseil/abseil-cpp/archive/df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz -> abseil-cpp-df3ea785d8c30a9503321a3d35ee7d35808f190d.tar.gz + https://github.com/bazelbuild/bazel-skylib/releases/download/0.9.0/bazel_skylib-0.9.0.tar.gz + https://github.com/bazelbuild/rules_android/archive/v0.1.1.zip -> bazelbuild-rules_android-v0.1.1.zip + https://github.com/bazelbuild/bazel-toolchains/archive/92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz -> bazel-toolchains-92dd8a7a518a2fb7ba992d47c8b38299fe0be825.tar.gz + https://github.com/bazelbuild/rules_cc/archive/01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip -> bazelbuild-rules_cc-01d4a48911d5e7591ecb1c06d3b8af47fe872371.zip + https://github.com/bazelbuild/rules_closure/archive/308b05b2419edb5c8ee0471b67a40403df940149.tar.gz -> bazelbuild-rules_closure-308b05b2419edb5c8ee0471b67a40403df940149.tar.gz + https://github.com/bazelbuild/rules_docker/releases/download/v0.10.0/rules_docker-v0.10.0.tar.gz -> bazelbuild-rules_docker-v0.10.0.tar.gz + https://github.com/bazelbuild/rules_java/archive/7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip -> bazelbuild-rules_java-7cf3cefd652008d0a64a419c34c13bdca6c8f178.zip + https://github.com/bazelbuild/rules_proto/archive/97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz -> bazelbuild-rules_proto-97d8af4dc474595af3900dd85cb3a29ad28cc313.tar.gz + https://github.com/bazelbuild/rules_python/releases/download/0.0.1/rules_python-0.0.1.tar.gz -> bazelbuild-rules_python-0.0.1.tar.gz + https://github.com/bazelbuild/rules_swift/archive/3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz -> bazelbuild-rules_swift-3eeeb53cebda55b349d64c9fc144e18c5f7c0eb8.tar.gz + https://github.com/dmlc/dlpack/archive/3efc489b55385936531a06ff83425b719387ec63.tar.gz -> dlpack-3efc489b55385936531a06ff83425b719387ec63.tar.gz + https://github.com/google/farmhash/archive/816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz -> farmhash-816a4ae622e964763ca0862d9dbd19324a1eaf45.tar.gz + https://github.com/google/gemmlowp/archive/fda83bdc38b118cc6b56753bd540caa49e570745.zip -> gemmlowp-fda83bdc38b118cc6b56753bd540caa49e570745.zip + https://github.com/google/highwayhash/archive/fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz -> highwayhash-fd3d9af80465e4383162e4a7c5e2f406e82dd968.tar.gz + https://github.com/google/re2/archive/506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz -> re2-506cfa4bffd060c06ec338ce50ea3468daa6c814.tar.gz + https://github.com/joe-kuo/sobol_data/archive/835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz -> sobol_data-835a7d7b1ee3bc83e575e302a985c66ec4b65249.tar.gz + https://github.com/llvm/llvm-project/archive/f402e682d0ef5598eeffc9a21a691b03e602ff58.tar.gz -> llvm-f402e682d0ef5598eeffc9a21a691b03e602ff58.tar.gz + https://github.com/mborgerding/kissfft/archive/36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz -> kissfft-36dbc057604f00aacfc0288ddad57e3b21cfc1b8.tar.gz + https://github.com/google/ruy/archive/5bb02fbf90824c2eb6cd7418f766c593106a332b.zip -> ruy-5bb02fbf90824c2eb6cd7418f766c593106a332b.zip + https://github.com/pytorch/cpuinfo/archive/d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz -> pytorch-cpuinfo-d5e37adf1406cf899d7d9ec1d317c47506ccb970.tar.gz + https://github.com/pytorch/cpuinfo/archive/6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip -> pytorch-cpuinfo-6cecd15784fcb6c5c0aa7311c6248879ce2cb8b2.zip + cuda? ( + https://github.com/nvidia/nccl/archive/195232556936b39b01cc908296e1650b80d4a3e9.tar.gz -> nvidia-nccl-195232556936b39b01cc908296e1650b80d4a3e9.tar.gz + https://github.com/NVlabs/cub/archive/1.9.9.zip -> cub-1.9.9.zip + ) + python? ( + https://github.com/intel/ARM_NEON_2_x86_SSE/archive/1200fe90bb174a6224a525ee60148671a786a71f.tar.gz -> ARM_NEON_2_x86_SSE-1200fe90bb174a6224a525ee60148671a786a71f.tar.gz + https://storage.googleapis.com/mirror.tensorflow.org/docs.python.org/2.7/_sources/license.rst.txt -> tensorflow-1.15.0-python-license.rst.txt + https://pypi.python.org/packages/bc/cc/3cdb0a02e7e96f6c70bd971bc8a90b8463fda83e264fa9c5c1c98ceabd81/backports.weakref-1.0rc1.tar.gz + )" + +SRC_URI="https://github.com/${PN}/${PN}/archive/v${MY_PV}.tar.gz -> ${P}.tar.gz + https://dev.gentoo.org/~perfinion/patches/tensorflow-patches-${PVR}.tar.bz2 + ${bazel_external_uris}" + +RDEPEND=" + app-arch/snappy + dev-db/lmdb + dev-db/sqlite + dev-libs/double-conversion + dev-libs/icu:= + >=dev-libs/jsoncpp-1.9.2 + dev-libs/libpcre + dev-libs/nsync + dev-libs/openssl:0= + >=dev-libs/protobuf-3.13.0:= + >=dev-libs/re2-0.2019.06.01:= + media-libs/giflib + media-libs/libjpeg-turbo + media-libs/libpng:0 + >=net-libs/grpc-1.28:= + net-misc/curl + sys-libs/zlib + >=sys-apps/hwloc-2 + cuda? ( + || ( + ( =dev-util/nvidia-cuda-toolkit-11.1*[profiler] =dev-libs/cudnn-8* ) + ( =dev-util/nvidia-cuda-toolkit-11.0*[profiler] =dev-libs/cudnn-8* ) + ( =dev-util/nvidia-cuda-toolkit-10.2*[profiler] >=dev-libs/cudnn-7.6 ) + ( =dev-util/nvidia-cuda-toolkit-10.1*[profiler] >=dev-libs/cudnn-7.5 ) + ( =dev-util/nvidia-cuda-toolkit-10.0*[profiler] =dev-libs/cudnn-7.4* ) + ( =dev-util/nvidia-cuda-toolkit-9.2*[profiler] =dev-libs/cudnn-7.1* ) + ( =dev-util/nvidia-cuda-toolkit-9.1*[profiler] =dev-libs/cudnn-7.0* ) + ) + ) + mpi? ( virtual/mpi ) + python? ( + ${PYTHON_DEPS} + >=dev-libs/flatbuffers-1.12.0:= + dev-python/absl-py[${PYTHON_USEDEP}] + >=dev-python/astor-0.7.1[${PYTHON_USEDEP}] + dev-python/astunparse[${PYTHON_USEDEP}] + dev-python/dill[${PYTHON_USEDEP}] + dev-python/flatbuffers[${PYTHON_USEDEP}] + >=dev-python/gast-0.3.3[${PYTHON_USEDEP}] + dev-python/h5py[${PYTHON_USEDEP}] + >=dev-python/numpy-1.19[${PYTHON_USEDEP}] + >=dev-python/google-pasta-0.1.8[${PYTHON_USEDEP}] + >=dev-python/opt-einsum-3.3.0[${PYTHON_USEDEP}] + >=dev-python/protobuf-python-3.13.0[${PYTHON_USEDEP}] + dev-python/pybind11[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + dev-python/tblib[${PYTHON_USEDEP}] + dev-python/termcolor[${PYTHON_USEDEP}] + dev-python/typing-extensions[${PYTHON_USEDEP}] + >=dev-python/grpcio-1.28[${PYTHON_USEDEP}] + >=dev-python/wrapt-1.11.1[${PYTHON_USEDEP}] + >=net-libs/google-cloud-cpp-0.10.0 + >=sci-libs/keras-applications-1.0.8[${PYTHON_USEDEP}] + >=sci-libs/keras-preprocessing-1.1.2[${PYTHON_USEDEP}] + >=sci-visualization/tensorboard-2.3.0[${PYTHON_USEDEP}] + )" +DEPEND="${RDEPEND} + python? ( + dev-python/mock + dev-python/setuptools + )" +PDEPEND="python? ( + >=sci-libs/tensorflow-estimator-2.4.0_rc0[${PYTHON_USEDEP}] + )" +BDEPEND=" + app-arch/unzip + >=dev-libs/protobuf-3.8.0 + dev-java/java-config + =dev-util/bazel-3* + cuda? ( + >=dev-util/nvidia-cuda-toolkit-9.1[profiler] + ) + !python? ( dev-lang/python ) + python? ( + dev-python/cython + dev-python/mock + >=dev-python/grpcio-tools-1.28 + )" +REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" + +S="${WORKDIR}/${MY_P}" + +DOCS=( AUTHORS CONTRIBUTING.md ISSUE_TEMPLATE.md README.md RELEASE.md ) +CHECKREQS_MEMORY="5G" +CHECKREQS_DISK_BUILD="10G" + +get-cpu-flags() { + local i f=() + # Keep this list in sync with tensorflow/core/platform/cpu_feature_guard.cc. + for i in sse sse2 sse3 sse4_1 sse4_2 avx avx2 fma4; do + use cpu_flags_x86_${i} && f+=( -m${i/_/.} ) + done + use cpu_flags_x86_fma3 && f+=( -mfma ) + echo "${f[*]}" +} + +pkg_setup() { + ewarn "TensorFlow 2.0 is a major release that contains some incompatibilities" + ewarn "with TensorFlow 1.x. For more information about migrating to TF2.0 see:" + ewarn "https://www.tensorflow.org/guide/migrate" + + local num_pythons_enabled + num_pythons_enabled=0 + count_impls(){ + num_pythons_enabled=$((${num_pythons_enabled} + 1)) + } + use python && python_foreach_impl count_impls + + # 10G to build C/C++ libs, 5G per python impl + CHECKREQS_DISK_BUILD="$((10 + 6 * ${num_pythons_enabled}))G" + check-reqs_pkg_setup +} + +src_unpack() { + # Only unpack the main distfile + unpack "${P}.tar.gz" + unpack tensorflow-patches-${PVR}.tar.bz2 + bazel_load_distfiles "${bazel_external_uris}" +} + +src_prepare() { + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + append-flags $(get-cpu-flags) + bazel_setup_bazelrc + + eapply "${WORKDIR}"/patches/*.patch + + # Relax version checks in setup.py + sed -i "/^ '/s/==/>=/g" tensorflow/tools/pip_package/setup.py || die + sed -i "/config_googleapis/d" WORKSPACE || die + + # Prefixify hard-coded command locations + hprefixify -w /host_compiler_prefix/ third_party/gpus/cuda_configure.bzl + + default + use python && python_copy_sources + + use cuda && cuda_add_sandbox +} + +src_configure() { + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + do_configure() { + export CC_OPT_FLAGS=" " + export TF_ENABLE_XLA=$(usex xla 1 0) + export TF_NEED_OPENCL_SYCL=0 + export TF_NEED_OPENCL=0 + export TF_NEED_COMPUTECPP=0 + export TF_NEED_ROCM=0 + export TF_NEED_MPI=$(usex mpi 1 0) + export TF_SET_ANDROID_WORKSPACE=0 + + if use python; then + export PYTHON_BIN_PATH="${PYTHON}" + export PYTHON_LIB_PATH="$(python_get_sitedir)" + else + export PYTHON_BIN_PATH="$(which python)" + export PYTHON_LIB_PATH="$(python -c 'from distutils.sysconfig import *; print(get_python_lib())')" + fi + + export TF_NEED_CUDA=$(usex cuda 1 0) + export TF_DOWNLOAD_CLANG=0 + export TF_CUDA_CLANG=0 + export TF_NEED_TENSORRT=0 + if use cuda; then + export TF_CUDA_PATHS="${EPREFIX}/opt/cuda" + export GCC_HOST_COMPILER_PATH="$(cuda_gccdir)/$(tc-getCC)" + export TF_CUDA_VERSION="$(cuda_toolkit_version)" + export TF_CUDNN_VERSION="$(cuda_cudnn_version)" + einfo "Setting CUDA version: $TF_CUDA_VERSION" + einfo "Setting CUDNN version: $TF_CUDNN_VERSION" + + if [[ *$(gcc-version)* != $(cuda-config -s) ]]; then + ewarn "TensorFlow is being built with Nvidia CUDA support. Your default compiler" + ewarn "version is not supported by the currently installed CUDA. TensorFlow will" + ewarn "instead be compiled using: ${GCC_HOST_COMPILER_PATH}." + ewarn "If the build fails with linker errors try rebuilding the relevant" + ewarn "dependencies using the same compiler version." + fi + + if [[ -z "$TF_CUDA_COMPUTE_CAPABILITIES" ]]; then + ewarn "WARNING: Tensorflow is being built with its default CUDA compute capabilities: 3.5 and 7.0." + ewarn "These may not be optimal for your GPU." + ewarn "" + ewarn "To configure Tensorflow with the CUDA compute capability that is optimal for your GPU," + ewarn "set TF_CUDA_COMPUTE_CAPABILITIES in your make.conf, and re-emerge tensorflow." + ewarn "For example, to use CUDA capability 7.5 & 3.5, add: TF_CUDA_COMPUTE_CAPABILITIES=7.5,3.5" + ewarn "" + ewarn "You can look up your GPU's CUDA compute capability at https://developer.nvidia.com/cuda-gpus" + ewarn "or by running /opt/cuda/extras/demo_suite/deviceQuery | grep 'CUDA Capability'" + fi + fi + + # com_googlesource_code_re2 weird branch using absl, doesnt work with released re2 + local SYSLIBS=( + absl_py + astor_archive + astunparse_archive + boringssl + com_github_googleapis_googleapis + com_github_googlecloudplatform_google_cloud_cpp + com_github_grpc_grpc + com_google_protobuf + curl + cython + dill_archive + double_conversion + enum34_archive + flatbuffers + functools32_archive + gast_archive + gif + hwloc + icu + jsoncpp_git + libjpeg_turbo + lmdb + nasm + nsync + opt_einsum_archive + org_sqlite + pasta + pcre + png + pybind11 + six_archive + snappy + tblib_archive + termcolor_archive + typing_extensions_archive + wrapt + zlib + ) + + export TF_SYSTEM_LIBS="${SYSLIBS[@]}" + export TF_IGNORE_MAX_BAZEL_VERSION=1 + + # This is not autoconf + ./configure || die + + echo 'build --config=noaws --config=nohdfs' >> .bazelrc || die + echo 'build --define tensorflow_mkldnn_contraction_kernel=0' >> .bazelrc || die + + for cflag in $(pkg-config jsoncpp --cflags) + do + echo "build --copt=\"$cflag\"" >> .bazelrc || die + echo "build --host_copt=\"$cflag\"" >> .bazelrc || die + done + } + if use python; then + python_foreach_impl run_in_build_dir do_configure + else + do_configure + fi +} + +src_compile() { + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + if use python; then + python_setup + BUILD_DIR="${S}-${EPYTHON/./_}" + cd "${BUILD_DIR}" + fi + + # fail early if any deps are missing + ebazel build -k --nobuild \ + //tensorflow:libtensorflow_framework.so \ + //tensorflow:libtensorflow.so \ + //tensorflow:libtensorflow_cc.so \ + $(usex python '//tensorflow/tools/pip_package:build_pip_package' '') + + ebazel build \ + //tensorflow:libtensorflow_framework.so \ + //tensorflow:libtensorflow.so + ebazel build //tensorflow:libtensorflow_cc.so + + do_compile() { + ebazel build //tensorflow/tools/pip_package:build_pip_package + } + BUILD_DIR="${S}" + cd "${BUILD_DIR}" + use python && python_foreach_impl run_in_build_dir do_compile + ebazel shutdown +} + +src_install() { + local i j + export JAVA_HOME=$(java-config --jre-home) # so keepwork works + + do_install() { + einfo "Installing ${EPYTHON} files" + local srcdir="${T}/src-${MULTIBUILD_VARIANT}" + mkdir -p "${srcdir}" || die + bazel-bin/tensorflow/tools/pip_package/build_pip_package --src "${srcdir}" || die + cd "${srcdir}" || die + esetup.py install + + # libtensorflow_framework.so is in /usr/lib already + rm -f "${D}/$(python_get_sitedir)"/${PN}/lib${PN}_framework.so* || die + rm -f "${D}/$(python_get_sitedir)"/${PN}_core/lib${PN}_framework.so* || die + python_optimize + } + + if use python; then + python_foreach_impl run_in_build_dir do_install + + # Symlink to python-exec scripts + for i in "${ED}"/usr/lib/python-exec/*/*; do + n="${i##*/}" + [[ -e "${ED}/usr/bin/${n}" ]] || dosym ../lib/python-exec/python-exec2 "/usr/bin/${n}" + done + + python_setup + local BUILD_DIR="${S}-${EPYTHON/./_}" + cd "${BUILD_DIR}" || die + fi + + einfo "Installing headers" + ebazel build //tensorflow:install_headers + ebazel shutdown + insinto /usr/include/${PN}/ + doins -r bazel-bin/tensorflow/include/* + + einfo "Installing libs" + # Generate pkg-config file + ${PN}/c/generate-pc.sh --prefix="${EPREFIX}"/usr --libdir=$(get_libdir) --version=${MY_PV} || die + insinto /usr/$(get_libdir)/pkgconfig + doins ${PN}.pc ${PN}_cc.pc + + for l in libtensorflow{,_framework,_cc}.so; do + dolib.so bazel-bin/tensorflow/${l} + dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1) + dolib.so bazel-bin/tensorflow/${l}.$(ver_cut 1-3) + done + + einstalldocs +} diff --git a/sci-libs/trilinos/Manifest b/sci-libs/trilinos/Manifest index 4cd8b33cfbfe..d3808fa0537e 100644 --- a/sci-libs/trilinos/Manifest +++ b/sci-libs/trilinos/Manifest @@ -2,6 +2,9 @@ DIST trilinos-12.14.1-patches-r0.tar.xz 6448 BLAKE2B f852a4612c400ddfb6dcecb476e DIST trilinos-12.14.1.tar.gz 129036436 BLAKE2B e7401df2ff8408a7af4a8e90d93b1929df65228c4f5cf3c754d20ebdfa8f3835800f540e87c1198e0baf2fefe0920618ae497f59373720754ab0c9dc1da93136 SHA512 dfff0e0582cb5ad12614dd53e9635572c8d1ee86d96f432f5a6e046af63edb13f6bfa3037204ab89fbb0d27e9be9bd9661d47efb41ab2a6e421bca5eba6b6a87 DIST trilinos-12.18.1-patches-r0.tar.xz 6236 BLAKE2B fdcdedde68ef855aa98671223ad2c42467284ad7ca364e2b5ca715094a6efacc463f2d1812ee63ac980ca87dbe16bb2ac04835f52efa1df34651a608cb5407e9 SHA512 e6db2be4642b8f9797b0be6dd05641ae469dd5117b1b04da54ed955bd56473d6aaa69d59dfd7869db1e7059d2d9b2cb2d9269dd5ef863663eabb90c5c256b987 DIST trilinos-12.18.1.tar.gz 152007573 BLAKE2B 5dc2ee432d777712fb4ca1dc2d7ad68015f523fdbcbd4f55388a89d31c0946a1c5031b3e8f906952cf6b2f4f16928e6da5f17b1f6ee0f0e5669cfce5c8a09367 SHA512 e2a57df57e8e98ed97bbde9c1e768738f0eaccc32466aff6daa308573a860b3debee89bd570c113ca0f6a6458ff562aa6596ddf657236c368b7b2e26a4b4466b +DIST trilinos-13.0.0-patches-r0.tar.xz 7672 BLAKE2B 6412f1226549086ef2fca3c4d8bba3c5541489879f4fa37c3598a7271128e3232fa1cc56a51d44fb88d679458a79a082c3984085ddbe4bc0884b0cb45ba683c0 SHA512 91372fe0f47a1f5d4dbc1856e2cfb9d4f1eb8cc0de941013a7a6e791730c9e10decdcd4ca39b36bae836ac66040bee70af187b4a056d46b0da0fe72e8c5943fc +DIST trilinos-13.0.0.tar.gz 157960946 BLAKE2B 6336d71f469dd4561786092b175ec3396d6b7956aeec6ab8d9d6e87a1b1158a0840661a87514888fc16ea36c44d628dadb865a3244785c2c5d4b24213aca2096 SHA512 74b1e852971c8f040e8640688c879659bf6b03eed0bc6f76f31d768e7c4eb50b23fb8bfb9997d7f630001d80150161aac80fbd3237f52071657908320c1d723d EBUILD trilinos-12.14.1.ebuild 6148 BLAKE2B d8ef14be03e34742e59292426af03336fb3997f3e50b02e0d6a9d6114a5d67c7d3530e93f44e645e247f395343b1a3045383714f8408a41a0434cf125f6006c5 SHA512 b96f197cfd8435366940237eba40dd8cd48e950e6c814ebcb18b6c04125f374d4475cecaea3c25a2ec60b3685e3db2d52ac025a9f6031111c67039cfa00be2d8 EBUILD trilinos-12.18.1.ebuild 6445 BLAKE2B 0e8efec55654b6f10ef389df708c6f3ce1f9d80be8f8d5a45a442520a656d59859a1ce7f796650445deaa8b16e5077ff4f2333401eb0a336ef3e5f50779036ad SHA512 639cf20e9bd4353c63a3c61e831ee6a24471c61cfccc4a9821f759b2fd652a63a9de7ac5c798aca5e65bbd856193659e105e1dc457f9f1ec0fa634e71935c515 +EBUILD trilinos-13.0.0.ebuild 6530 BLAKE2B 655911a00a65ff877f2c3eae666ab44136db8b9651683120f0e8f85fbb883206c3ebce2f5464d9d140e9246102af741d2ed2ff688e0146055ac1c9aae15d47bb SHA512 ab20c26d14b3b03e4e5d66c4aa5f69913bafa34d933891269007613694fb2ec7c54bde1164e81daf9f8cad33bcd221532773e2b79cd693fa18d96e8bb0f1a2d0 MISC metadata.xml 2778 BLAKE2B 45cb2a647a1730c9b6b21271364b5f4acaf145f6ae33db356d0b9be7584705c29a645d3f96abfe0a9b87540ae55ab586ec202191776f4472b66291c274b9f24b SHA512 c58e98197353efe1c6fef038dd53d4a938e85aa66fc53f00cab0133d8ee89c629eead55c270c88583778b193f0a85b498c7235fc3f1e8f45a1abfff2d5f0cbec diff --git a/sci-libs/trilinos/trilinos-13.0.0.ebuild b/sci-libs/trilinos/trilinos-13.0.0.ebuild new file mode 100644 index 000000000000..efce4176d970 --- /dev/null +++ b/sci-libs/trilinos/trilinos-13.0.0.ebuild @@ -0,0 +1,220 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 +CMAKE_MAKEFILE_GENERATOR=emake + +inherit cmake-utils toolchain-funcs multilib toolchain-funcs + +DESCRIPTION="Scientific library collection for large scale problems" +HOMEPAGE="http://trilinos.sandia.gov/" +MY_PV="${PV//\./-}" +PATCHSET="r0" +SRC_URI="https://github.com/${PN}/Trilinos/archive/${PN}-release-${MY_PV}.tar.gz -> ${P}.tar.gz + https://dev.gentoo.org/~tamiko/distfiles/${P}-patches-${PATCHSET}.tar.xz" + +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" + +LICENSE="BSD LGPL-2.1" +SLOT="0" + +IUSE=" + adolc arprec boost clp cuda eigen glpk gtest hdf5 hwloc hypre + matio metis mkl mumps netcdf petsc qd scalapack scotch sparse + superlu taucs tbb test threads tvmet yaml zlib X +" + +# TODO: fix export cmake function for tests +RESTRICT="test" + +RDEPEND=" + sys-libs/binutils-libs + virtual/blas + virtual/lapack + virtual/mpi + adolc? ( sci-libs/adolc ) + arprec? ( sci-libs/arprec ) + boost? ( dev-libs/boost ) + clp? ( sci-libs/coinor-clp ) + cuda? ( >=dev-util/nvidia-cuda-toolkit-3.2 ) + eigen? ( dev-cpp/eigen:3 ) + glpk? ( sci-mathematics/glpk ) + gtest? ( dev-cpp/gtest ) + hdf5? ( sci-libs/hdf5[mpi] ) + hypre? ( sci-libs/hypre ) + hwloc? ( sys-apps/hwloc ) + matio? ( sci-libs/matio ) + mkl? ( sci-libs/mkl ) + metis? ( || ( sci-libs/parmetis sci-libs/metis ) ) + mumps? ( sci-libs/mumps ) + netcdf? ( sci-libs/netcdf ) + petsc? ( sci-mathematics/petsc ) + qd? ( sci-libs/qd ) + scalapack? ( sci-libs/scalapack ) + scotch? ( sci-libs/scotch ) + sparse? ( sci-libs/cxsparse sci-libs/umfpack ) + superlu? ( sci-libs/superlu ) + taucs? ( sci-libs/taucs ) + tbb? ( dev-cpp/tbb ) + tvmet? ( dev-libs/tvmet ) + yaml? ( dev-cpp/yaml-cpp ) + zlib? ( sys-libs/zlib ) + X? ( x11-libs/libX11 )" +DEPEND="${RDEPEND} + virtual/pkgconfig" + +S="${WORKDIR}/Trilinos-${PN}-release-${MY_PV}" + +PATCHES=( + "${WORKDIR}"/patches +) + +trilinos_conf() { + local dirs libs d + for d in $($(tc-getPKG_CONFIG) --libs-only-L $1); do + dirs="${dirs};${d:2}" + done + [[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_DIRS=${dirs:1}" ) + for d in $($(tc-getPKG_CONFIG) --libs-only-l $1); do + libs="${libs};${d:2}" + done + [[ -n ${libs} ]] && mycmakeargs+=( "-D${2}_LIBRARY_NAMES=${libs:1}" ) + dirs="" + for d in $($(tc-getPKG_CONFIG) --cflags-only-I $1); do + dirs="${dirs};${d:2}" + done + [[ -n ${dirs} ]] && mycmakeargs+=( "-D${2}_INCLUDE_DIRS=${dirs:1}" ) +} + +src_configure() { + local mycmakeargs=( + -DBUILD_SHARED_LIBS=ON + -DCMAKE_INSTALL_PREFIX="${EPREFIX}" + -DCMAKE_SKIP_INSTALL_RPATH=ON + -DTrilinos_INSTALL_CONFIG_DIR="${EPREFIX}/usr/$(get_libdir)/cmake" + -DTrilinos_INSTALL_INCLUDE_DIR="${EPREFIX}/usr/include/trilinos" + -DTrilinos_INSTALL_LIB_DIR="${EPREFIX}/usr/$(get_libdir)/trilinos" + -DTrilinos_ENABLE_ALL_PACKAGES=ON + -DTrilinos_ENABLE_PyTrilinos=OFF + -DTrilinos_ENABLE_SEACAS=OFF + -DTrilinos_ENABLE_SEACASChaco=OFF + -DTrilinos_ENABLE_SEACASExodiff="$(usex netcdf)" + -DTrilinos_ENABLE_SEACASExodus="$(usex netcdf)" + -DTrilinos_ENABLE_TESTS="$(usex test)" + -DZoltan2_ENABLE_Experimental=ON + -DTPL_ENABLE_BinUtils=ON + -DTPL_ENABLE_BLAS=ON + -DTPL_ENABLE_LAPACK=ON + -DTPL_ENABLE_MPI=ON + -DTPL_ENABLE_ADOLC="$(usex adolc)" + -DTPL_ENABLE_AMD="$(usex sparse)" + -DTPL_ENABLE_ARPREC="$(usex arprec)" + -DTPL_ENABLE_BLACS="$(usex scalapack)" + -DTPL_ENABLE_BoostLib="$(usex boost)" + -DTPL_ENABLE_Boost="$(usex boost)" + -DTPL_ENABLE_Clp="$(usex clp)" + -DTPL_ENABLE_CSparse="$(usex sparse)" + -DTPL_ENABLE_CUDA="$(usex cuda)" + -DTPL_ENABLE_CUSPARSE="$(usex cuda)" + -DTPL_ENABLE_Eigen="$(usex eigen)" + -DTPL_ENABLE_GLPK="$(usex glpk)" + -DTPL_ENABLE_gtest="$(usex gtest)" + -DTPL_ENABLE_HDF5="$(usex hdf5)" + -DTPL_ENABLE_HWLOC="$(usex hwloc)" + -DTPL_ENABLE_HYPRE="$(usex hypre)" + -DTPL_ENABLE_Matio="$(usex matio)" + -DTPL_ENABLE_METIS="$(usex metis)" + -DTPL_ENABLE_MKL="$(usex mkl)" + -DTPL_ENABLE_MUMPS="$(usex mumps)" + -DTPL_ENABLE_Netcdf="$(usex netcdf)" + -DTPL_ENABLE_PARDISO_MKL="$(usex mkl)" + -DTPL_ENABLE_PETSC="$(usex petsc)" + -DTPL_ENABLE_Pthread="$(usex threads)" + -DTPL_ENABLE_QD="$(usex qd)" + -DTPL_ENABLE_SCALAPACK="$(usex scalapack)" + -DTPL_ENABLE_Scotch="$(usex scotch)" + -DTPL_ENABLE_SuperLU="$(usex superlu)" + -DTPL_ENABLE_TAUCS="$(usex taucs)" + -DTPL_ENABLE_TBB="$(usex tbb)" + -DTPL_ENABLE_Thrust="$(usex cuda)" + -DTPL_ENABLE_TVMET="$(usex tvmet)" + -DTPL_ENABLE_UMFPACK="$(usex sparse)" + -DTPL_ENABLE_X11="$(usex X)" + -DTPL_ENABLE_yaml-cpp="$(usex yaml)" + -DTPL_ENABLE_Zlib="$(usex zlib)" + -DML_ENABLE_SuperLU:BOOL=OFF + ) + + use eigen && \ + mycmakeargs+=( + -DEigen_INCLUDE_DIRS="${EPREFIX}/usr/include/eigen3" + ) + use hypre && \ + mycmakeargs+=( + -DHYPRE_INCLUDE_DIRS="${EPREFIX}/usr/include/hypre" + ) + use scotch && \ + mycmakeargs+=( + -DScotch_INCLUDE_DIRS="${EPREFIX}/usr/include/scotch" + ) + + # cxsparse is a rewrite of csparse + extras + use sparse && \ + mycmakeargs+=( + -DCSparse_LIBRARY_NAMES="cxsparse" + ) + + # mandatory blas and lapack + trilinos_conf blas BLAS + trilinos_conf lapack LAPACK + use superlu && trilinos_conf superlu SuperLU + use metis && trilinos_conf metis METIS + + # blacs library is included in scalapack these days + if use scalapack; then + trilinos_conf scalapack SCALAPACK + mycmakeargs+=( + -DBLACS_LIBRARY_NAMES="scalapack" + -DBLACS_INCLUDE_DIRS="${EPREFIX}/usr/include/blacs" + ) + fi + + # + # Make sure we use the compiler wrappers in order to build trilinos. + # + export CC=mpicc CXX=mpicxx && tc-export CC CXX + + # + # cmake-utils eclass patches the base directory CMakeLists.txt + # which does not work for complex Trilinos CMake modules + # + CMAKE_BUILD_TYPE=RELEASE cmake-utils_src_configure +} + +src_install() { + cmake-utils_src_install + + # Clean up the mess: + mv "${ED}"/bin "${ED}/usr/$(get_libdir)"/trilinos || die "mv failed" + mv "${ED}/usr/$(get_libdir)"/trilinos/cmake/* "${ED}/usr/$(get_libdir)"/cmake || die "mv failed" + rmdir "${ED}/usr/$(get_libdir)/trilinos/cmake" || die "rmdir failed" + if [ -f "${ED}"/lib/exodus.py ]; then + mv "${ED}"/lib/exodus.py "${ED}/usr/$(get_libdir)"/trilinos || die "mv failed" + fi + if [[ $(get_libdir) != lib ]]; then + mv "${ED}"/usr/lib/pkgconfig "${ED}/usr/$(get_libdir)" + fi + + mv "${ED}"/include/* "${ED}"/usr/include || die "mv failed" + rmdir "${ED}"/include + + # + # register $(get_libdir)/trilinos in LDPATH so that the dynamic linker + # has a chance to pick up the libraries... + # + cat >> "${T}"/99trilinos <<- EOF + LDPATH="${EPREFIX}/usr/$(get_libdir)/trilinos" + PATH="${EPREFIX}/usr/$(get_libdir)/trilinos/bin" + EOF + doenvd "${T}"/99trilinos +} diff --git a/sci-libs/umfpack/Manifest b/sci-libs/umfpack/Manifest index 269e4f6dc814..82db6241d589 100644 --- a/sci-libs/umfpack/Manifest +++ b/sci-libs/umfpack/Manifest @@ -1,3 +1,3 @@ DIST umfpack-5.7.9.tar.bz2 772026 BLAKE2B 6d6dc1ba47b8f473884c1cb17d3eaa363d88281512e33586a0af0c2bcb7a523272bef4d8da0a29e2a5a84c8f0cd0ee6830ec10247971db63b4c319e6fa9a3c42 SHA512 5ad57467b5b7e4579f3cc9e2e7c92a0262ac2ef991a606d079b749b66e10da60aceaa4b0e741c116f8866da23c0f7c06368fe2b08d66d51383683f0dcbeddba3 -EBUILD umfpack-5.7.9.ebuild 967 BLAKE2B b781679848dd4c9921b43c28342c0a75d9672ce0214e663a3457b8388da6f86639328397e65c0f278794bbcb0ae9ffd91a383c1b9a92eec722d8aeb8ccc443d2 SHA512 3df2a8d58dabdcc55c502006b0a1eb897ceaab747dcf74a6b96876697a267adff1595f06d22dde4c092f494d217dd7d4a06533bb6610617ea1d628d7b5683a20 +EBUILD umfpack-5.7.9.ebuild 966 BLAKE2B e8736ac2725fdbd95a9b77bdcb40c5222d775049a075196d0160505421db9b170b85348aabe69583ac0ff68a6b42caee4e7a56946e088e472c43b8415940da17 SHA512 7f18ba356f3af2506eff80b5efb3e249c658eaacc4d91d7dc1de4db205b3ca5002dc397361317971ebdf9414d5b246452ed3bf5b68e0e2e1db5e1d8e74af0038 MISC metadata.xml 667 BLAKE2B 1e0018ea7f7433ce19bfc6e364a30731e5e02f657502f721513da4191752b97c7a3d8352707e1036f0e5fe81ffb81ed3862cc2b213ca89e80067a06a82e5b078 SHA512 c204d7f86f2338f9571a46773c251dab31caa3d5bfbe4ae87326466026616d80737435d8cdbf0ae8cb5e109d8b52a5b6ccba09f8b52f38dfe9058049ef541007 diff --git a/sci-libs/umfpack/umfpack-5.7.9.ebuild b/sci-libs/umfpack/umfpack-5.7.9.ebuild index aab341988959..920e65cb2a72 100644 --- a/sci-libs/umfpack/umfpack-5.7.9.ebuild +++ b/sci-libs/umfpack/umfpack-5.7.9.ebuild @@ -11,7 +11,7 @@ SRC_URI="http://202.36.178.9/sage/${P}.tar.bz2" LICENSE="GPL-2+" SLOT="0" -KEYWORDS="~alpha amd64 ~arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" +KEYWORDS="~alpha amd64 arm arm64 ~hppa ~ia64 ~mips ppc ppc64 sparc x86 ~amd64-linux ~x86-linux ~x86-macos" IUSE="+cholmod doc" BDEPEND="virtual/pkgconfig diff --git a/sci-libs/vtk/Manifest b/sci-libs/vtk/Manifest index 32f1846346ad..0e13fc83b1f4 100644 --- a/sci-libs/vtk/Manifest +++ b/sci-libs/vtk/Manifest @@ -1,5 +1,6 @@ AUX vtk-8.1.0-openmpi-4-compatibility.patch 473 BLAKE2B 2f4994b5c745746b0c1391666d155e8ff79f6c57969177862e3f64956cc370b2b12a0ba223bd344734a7700c5eb728ccaf1ac7188d0fd049815b7b22c7648203 SHA512 6a2e25263070747657aa319d80b333375b2c10bbbd58fc98a1ab6cdb563e996afe9af8d4ae28d4aab24a437508993cfa3cacfc9284562d7af8a9e29fded73837 AUX vtk-8.2.0-fno-common.patch 1694 BLAKE2B 7fe15b8ea0fc358360e06be2fcc6634005cbb294fdcfea87028ef67fd018085c33448a70babd0e3e6997767b801e69853381c7bd02926d9657ea3233a8bcd065 SHA512 fbccb357649cf0dc7c5a5123db05b87e26c6095c89005adcb9e799cc68531fac87f4f588d12f0ee2728517a60436192011a04885e06ef4975fc8b81ba54ba1ea +AUX vtk-8.2.0-freetype-2.10.3-provide-FT_CALLBACK_DEF.patch 634 BLAKE2B c143e943cfc8130e4d1a72776639e49212d9efa66db71fba6a9469381aaf35f526f316e4a6e5bd144dc8054f857b3a3f7a179eb1875c9ad0859ba669c5d63215 SHA512 28fd381693a1ed9584be3d1acc3d3de20be3cb23a3605f3f66470cf9ec0bc66ef0e3f574fc760fbbd4aeca75ea3aa96c0e22b37fbdb54a22073fee179e4a26cb AUX vtk-8.2.0-gcc-10.patch 739 BLAKE2B 8b9ae179c5af17f5d0173674ffd616f5473bcc0830487343150b778cf143d762fc77c7212ee4e7f8f725878e85a7c1ccaa320393164212b276703e0b86e61e7f SHA512 7a2a8ea7ac3f6d3a5fd7d6553764eb5396ee4d89cc259bbf772493953125982b4cc8a43dc7b7a5e5c1ab6783eba6dd0d6edc791465985fd1f4b1ac9eb99062eb AUX vtk-8.2.0-py38.patch 8467 BLAKE2B ea624989f3f0a4900fa692fc271d47d1d10cc047043e464f8b6ae9ea6713a63c4f0ec75c84a70d7fc2523b29b1c24ada4b77e90e9016690868c62217dbe69a8b SHA512 9922b24551c4716bdd95d398b2ea9d48f5c098350821a16767128a97180e4e1575414755545dd71e40dec88b0a7a61fc63ba2e598bedfc07620b15b0efd02cf4 AUX vtk-8.2.0-qt-5.15.patch 1153 BLAKE2B 2e0d041d15f547845c07d46da4f641df7a57c0df8d5f9d5290c44a91d403b58f4627ae713169696383afa1d9edd85c59606782b169238d08a5df0b7e28ac79b7 SHA512 d1460117738b33074fbd92ffc54a838452c5b2cdd668767295dced7a39c845cb58664f0ea91726015facf4e3b752a53f2a32e52c85dc187a815c95e0935d0f03 @@ -7,5 +8,5 @@ DIST VTK-8.2.0.tar.gz 35511819 BLAKE2B 908ed9377d75da6d0bd84de0078ba90a1e9396fcc DIST VTKData-8.2.0.tar.gz 304287875 BLAKE2B 0292d84be40e11203326dcb1bf45f4a6ad2a785968130d4868a230f1cfbdcb600d0c03d4dae3519e2737dc7a964f29c51500c91b3da4291069608dd80a2bce45 SHA512 517d0f6dfdb0c61f59df933f06d3a28c8a48ea684aaff311456213fe493e2a20128886144325fc4edfa376b2d375a2dae6c60ad6e3d5d2f4a7b0ac1d8545c87b DIST VTKLargeData-8.2.0.tar.gz 247522878 BLAKE2B 68dc90548604fbbb8419f2b400aea5d26599b48208b4104f41eaa90f99483689cd928cb00e3a7def396d65db2f03c9294d132854a27af74f66eb118c8319c4ce SHA512 8a7ea3d5870b1e4ccb31c77b4c270d00208349da1b2938e957210db3ec1449b678c66edc2faee1d4514aca6d725f642abc91e10ab0c151f6743cad1c53485588 DIST vtkDocHtml-8.2.0.tar.gz 132516675 BLAKE2B 8651a3793f3326dee36c5ae8a280b00943067f973115697f34770eefd42b5534a7d7e439e7745b32c5fa83daf5a5292b854792d18951af236d0aa77c3aa2b564 SHA512 45e198bde82948d1d8e47a8bdb64a2792c2bfdfc0d939ffe40ded79092d7ac5f497008c00c805baa09d27eabb419cdf0787eee1caf2ac44c5e8759ecf709a317 -EBUILD vtk-8.2.0.ebuild 9336 BLAKE2B 3ab298e9f884d3d816f7fd2af7606242f73b775f118b7f73abf730a955e46efde711d6b326f007dcf79e45395307b6310faf1531680d11a1b4cce719d17fcced SHA512 6ebb43154c78e61b32b8570a70b3aadece5cf87bec1acd7628a36d370182a06bf99c44185f258060a30ffbf947d940f93971b98648f417b58de7a8e91657797e +EBUILD vtk-8.2.0.ebuild 9416 BLAKE2B a97dc772dab40af9fdd0d660ebe4532e26eb77055453b128bf5463d5689f4092ec5180697eed7d517f9f5b9b1a5e704336d311ef9f1137358df42843ece43746 SHA512 c8503ea91486214a0cdbda813c0fb012e6111015939e1d9aa701664e4e707f6043cf0dcd4e9dba961d33513fb66015f71528175d1c9e4cb935e8ef5572014655 MISC metadata.xml 988 BLAKE2B 2533eda3936361d835dba2e30f1b1a19484facc289603d82b6c2012ee242e7778b1080d7136584c08113d7a82e0742d7bb2373984667301a4c7d52b4dbd8b087 SHA512 f4e29e15a05cfb49b24f4a8e24a6e43ac72ac0fa21ed640a70e5017263f23e21e514dedc489d963acd803407df8ee2bd2d6006c83eece795f91b4809d2ec2ff4 diff --git a/sci-libs/vtk/files/vtk-8.2.0-freetype-2.10.3-provide-FT_CALLBACK_DEF.patch b/sci-libs/vtk/files/vtk-8.2.0-freetype-2.10.3-provide-FT_CALLBACK_DEF.patch new file mode 100644 index 000000000000..b4674873508f --- /dev/null +++ b/sci-libs/vtk/files/vtk-8.2.0-freetype-2.10.3-provide-FT_CALLBACK_DEF.patch @@ -0,0 +1,18 @@ +--- VTK-8.2.0/ThirdParty/freetype/vtk_freetype.h.in.orig 2019-01-30 18:15:13.000000000 +0100 ++++ VTK-8.2.0/ThirdParty/freetype/vtk_freetype.h.in 2020-10-17 00:03:32.730820908 +0200 +@@ -20,6 +20,15 @@ + + #ifdef VTK_USE_SYSTEM_FREETYPE + # include ++/* FT_CALLBACK_DEF no longer exported since freetype-2.10.3 */ ++/* has been moved to */ ++# ifndef FT_CALLBACK_DEF ++# ifdef __cplusplus ++# define FT_CALLBACK_DEF( x ) extern "C" x ++# else ++# define FT_CALLBACK_DEF( x ) static x ++# endif ++# endif /* FT_CALLBACK_DEF */ + #else + # include + #endif diff --git a/sci-libs/vtk/vtk-8.2.0.ebuild b/sci-libs/vtk/vtk-8.2.0.ebuild index b0aa1a26e408..5f74a4c99e40 100644 --- a/sci-libs/vtk/vtk-8.2.0.ebuild +++ b/sci-libs/vtk/vtk-8.2.0.ebuild @@ -129,6 +129,7 @@ PATCHES=( "${FILESDIR}"/${P}-gcc-10.patch # bug 723374 "${FILESDIR}"/${P}-fno-common.patch # bug 721048 "${FILESDIR}"/${P}-py38.patch + "${FILESDIR}"/${P}-freetype-2.10.3-provide-FT_CALLBACK_DEF.patch # bug #751088 ) RESTRICT="test" diff --git a/sci-libs/xylib/Manifest b/sci-libs/xylib/Manifest index a97920ba232f..fd4360d8f702 100644 --- a/sci-libs/xylib/Manifest +++ b/sci-libs/xylib/Manifest @@ -1,3 +1,3 @@ -DIST xylib-1.2.tar.bz2 297167 BLAKE2B f30a397aea282626b2e5ea93053571ed6d617b4fdeff468751fed9c9f538595854c948d0f50656ce22dbadfe4ff99a59dc4a5fb70686e78c084bbe1db1c9c11a SHA512 16eaa4b37014914c75ca3d0188aaf236c342887c03e233a9bb770412b3bb16da6779ab82c8acd66677d98ada75537c77d1abad723defd33dbe6eda78c6c88b91 -EBUILD xylib-1.2.ebuild 622 BLAKE2B 1e167618f51dda4495240bc40a5ff438d0ac304044f2d4a0a50c933a300c8c8014f101426d9d7a66572f74d6e9aad7a7c352526cea6ad1d509bfdabd5a12a3a2 SHA512 ae4691ce2ece1d209d4769f454b060c1287b47a3510ec9c40b8556786f0fc784b20427d15eac77e69ab58f80193b360f8349c0d31b647d09e6297c99ecd4fc8c +DIST xylib-1.6.tar.bz2 370765 BLAKE2B 76eb968f06a6a015ed7a29a493d888642767cda103733498b8706c973498aa4ac8576716b06f6eae8d95a1f625e9cd91ab02cfd53146d976e32fc9295f3c502f SHA512 9861cbf03f8b921a93a2d32a529ff94d77723e2510cd61096b4b85f91af4be6330ed82e8da94bc45dbca7f9814077360d1dae204315b28c2b6d85e3d2c7f6696 +EBUILD xylib-1.6.ebuild 807 BLAKE2B e15510175a2dd0013cadda8239039b4ac9a791265142f47f4be44b6538c0499256b5101ea96563cc1c2458a1ca3548b808909f213233bdac1c82df1f9618c574 SHA512 4c09b69be3205c1924a8cef18f4a5ca8fe5cfd73c2e83eb5d795f1c1b36117b2a50e5de8d64de73ccfdc31f7bb544906d645bc816b3669637432725c0d738950 MISC metadata.xml 560 BLAKE2B 15a5a2f32f2c2285215daa40e7c5cb9cbff5c0f470c52e566812948cecd6cccdfa4a9eaee4a10ccbc46503c1a8ab2df557b88b37912def66bb79fe0cdbe5b8b7 SHA512 5bbf4b430ae8770e8d6ce2e084e093689acbbb36bb9aef5e0a6b21586870ee5fb0c4953588052aa053eb5d3418a84f18d0c6b7940282c9678a803bc1ae9ba8f3 diff --git a/sci-libs/xylib/xylib-1.2.ebuild b/sci-libs/xylib/xylib-1.2.ebuild deleted file mode 100644 index ed9ee753d6c8..000000000000 --- a/sci-libs/xylib/xylib-1.2.ebuild +++ /dev/null @@ -1,30 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit autotools-utils - -DESCRIPTION="Experimental x-y data reading library" -HOMEPAGE="http://www.unipress.waw.pl/fityk/xylib/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" - -LICENSE="LGPL-2.1" - -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="bzip2 static-libs zlib" - -RDEPEND=" - dev-libs/boost - bzip2? ( app-arch/bzip2 ) - zlib? ( sys-libs/zlib )" -DEPEND="${RDEPEND}" - -src_configure() { - local myeconfargs=( - $(use_with bzip2 bzlib) - $(use_with zlib) - ) - autotools-utils_src_configure -} diff --git a/sci-libs/xylib/xylib-1.6.ebuild b/sci-libs/xylib/xylib-1.6.ebuild new file mode 100644 index 000000000000..49e226d26949 --- /dev/null +++ b/sci-libs/xylib/xylib-1.6.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +WX_GTK_VER=3.0-gtk3 + +inherit wxwidgets + +DESCRIPTION="Experimental x-y data reading library" +HOMEPAGE="https://github.com/wojdyr/xylib" +SRC_URI="https://github.com/wojdyr/xylib/releases/download/v${PV}/${P}.tar.bz2" + +LICENSE="LGPL-2.1" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="bzip2 gui zlib" + +RDEPEND=" + bzip2? ( app-arch/bzip2 ) + gui? ( x11-libs/wxGTK:${WX_GTK_VER} ) + zlib? ( sys-libs/zlib )" +DEPEND=" + ${RDEPEND} + dev-libs/boost" + +src_configure() { + use gui && setup-wxwidgets + + econf \ + --disable-static \ + $(use_with bzip2 bzlib) \ + $(use_with gui) \ + $(use_with zlib) +} + +src_install() { + default + + # no static archives + find "${ED}" -name '*.la' -delete || die +} -- cgit v1.2.3