From 5a21cec0c36dba03507dcbd5e8ab6698d00b39bf Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Thu, 17 Aug 2023 09:31:54 +0100 Subject: gentoo auto-resync : 17:08:2023 - 09:31:54 --- sci-libs/Manifest.gz | Bin 45116 -> 45121 bytes sci-libs/hdf5/Manifest | 2 + sci-libs/hdf5/hdf5-1.14.2.ebuild | 115 ++++++++++++++++++++++++ sci-libs/scikit-learn/Manifest | 2 +- sci-libs/scikit-learn/scikit-learn-1.1.2.ebuild | 2 +- 5 files changed, 119 insertions(+), 2 deletions(-) create mode 100644 sci-libs/hdf5/hdf5-1.14.2.ebuild (limited to 'sci-libs') diff --git a/sci-libs/Manifest.gz b/sci-libs/Manifest.gz index fd4658b427b4..bc6157fc68c9 100644 Binary files a/sci-libs/Manifest.gz and b/sci-libs/Manifest.gz differ diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest index 8c8c41852655..6d977f429fca 100644 --- a/sci-libs/hdf5/Manifest +++ b/sci-libs/hdf5/Manifest @@ -7,8 +7,10 @@ AUX hdf5-1.8.9-static_libgfortran.patch 429 BLAKE2B 9e1c544a453c09b3498a7d9d3e80 DIST hdf5-1.10.5.tar.bz2 8706317 BLAKE2B ac326be8fe4ccc4b0153f15bc7d65aa8f1adc2ae279d3980f57ed46722b754d3f36ecf1d6273c75e80ed1afd4bbf10c6b1c5d9408e1f83a4b2e397e7902a7d3c SHA512 769e43b8672e26fe24ed68da0228c010d3d9bc950ca09f0bc60707911a2f26f2f8415c8abc8ec06e07667148d8cdb3b0c7b3e7860d9b19739629c5dfd5ce73d4 DIST hdf5-1.12.2.tar.bz2 10494264 BLAKE2B 99ca5b57f6f54fa044c909f0773de62b218c1f0ec3c011f88f3c227536dd719e77ddbe42d562b1214e8843e41d8fc56db499d7f122876fdd36ef31b235229cb7 SHA512 cbb4663570de76b11adb6bf62cfdb754371d31eeab04691479a5764a45207a9c1309665ab80f51c63a4b9b87354f9cbe6835cef506a9fd554d142c6d2bec21e5 DIST hdf5-1.14.1.tar.bz2 16257319 BLAKE2B fbabbe2a61fca3f841d0206e3918390001ec1ec713696b69845eb6390595794a63740db9a7b48fd132814268e216d8fea6288cd23b04b2fa981058b557113e73 SHA512 b4dd3fca88547fdcbb2afcc22cb11bb45b7b15c3c01d9e11b7f06030ffff1a9d5c4995abb6cf27b0c4e748f1a7ca497a7f2d995ba00586f447fcd2fa537e0e16 +DIST hdf5-1.14.2.tar.bz2 16070491 BLAKE2B 04acdc5352f7f0455bf6304ef07ddf51b99125bb585984bd3e27a521a784a6ad6723d64aa3b4179e4bd382334b7e68d06650404d7d4617a696d3f64917487dbc SHA512 1e1bfdff50c2e0e172d399c2d5b79b9ad0c7c72b9b30c4849aad7c5656393e8cf2af788cdf62b51fbe596023483fbc7fa23fdebf37bfe3109dae7f0783ea590f EBUILD hdf5-1.10.5-r1.ebuild 2940 BLAKE2B 45e4cf6004cb70667829844ddf37f2c4f96d6b5c92a8eb9b3c757ea47e6d9f98e28f906c7d2c6a33efd95328bc0b6358d640da36c82fc5408bbb968c38b95115 SHA512 04ac047f56128f41f4cdc8b07caa0d656f31d34200961a1ee525583263dc338abff7860158f9549ddf31bf0563ed963fbd5dff4ee212d85443aff599e5d2c25a EBUILD hdf5-1.12.2-r4.ebuild 3209 BLAKE2B eb7b30bee62cbad778b07f089026395d70046e3845b636bdb526e0960e4ae3789f2e5d1c9eac6fc213b755809c42946cf332446582d032d04900cfd80b57b06a SHA512 e6c2c24f9558c381b8ae5da8f0967635c64b02ad5f8288d5a08841c7637f8de7b72229f89d8be2cff5cd0c8c4482b404db3a7d41aeeaa927157c257f91fb62a3 EBUILD hdf5-1.12.2-r6.ebuild 3341 BLAKE2B c574efa933f240fae23049007c320138ea43354ddd78194d74e6b27f630a6ad0fa2a1bc083b563006eb7dd7e36ee00a77a6f684ad42bee383372a79750726d9a SHA512 0385774ab2be1abeec7467886f8900b514d8c1410c531dac7753570cb9e47d35750cd8ddfe92a0df524ecae8889602cc27caa15a52d8e94aa10455e50cf18df3 EBUILD hdf5-1.14.1.ebuild 3078 BLAKE2B 30428ba92c299c92463276e3853c8332efb0904856749f6a6f716b2f07a58a7fc12c62a7298d15067af9b436a5e5f237c322ff30a942337ab9e65a4f1765074f SHA512 076ceaa6f8eb5330e8bf1913ddfc659524a4770e2df0d459b88ce41eec4d99e4e0b9da42f7b690b24bc678f15dd96ba8d20c443bbd9f4afe9c111abe5efc9f10 +EBUILD hdf5-1.14.2.ebuild 3084 BLAKE2B 2278c010341f5e0d8a7c4bf3ece902498e2e45d23f30e08f318609be2e090ab98f538d85b8283b3c7285c2094a05f82862f769c85de7443f27ce52c09de52530 SHA512 1d81a3ddcb28b1fa9a94a905023a418c022410dd032f0b9c73d4c0ef78ded33c2405898da298927eb98661075845556237ed0fb1bfb42e2797015ff9d7f8fe2e MISC metadata.xml 826 BLAKE2B fd131bb207e4ab863ef7c05ab95e5c0254fa08230139a2508ab5f0c363809b0735532498ad26cc39621495a063de86ab5bd97447514ff561a63302e8b1d7d26d SHA512 290883ed9bf3de60bf04e2474c4db50e095b1b87974867e58601a5c5c2f98d6b839ed22d9ce2798bc44f484f1a38ee4b6df99aaea7d134629bd441d34b5a29b5 diff --git a/sci-libs/hdf5/hdf5-1.14.2.ebuild b/sci-libs/hdf5/hdf5-1.14.2.ebuild new file mode 100644 index 000000000000..3edb5153287a --- /dev/null +++ b/sci-libs/hdf5/hdf5-1.14.2.ebuild @@ -0,0 +1,115 @@ +# Copyright 1999-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=fortran + +# We've reverted *back* to autotools from CMake because of +# https://github.com/HDFGroup/hdf5/issues/1814. +inherit autotools fortran-2 flag-o-matic toolchain-funcs prefix + +MY_P=${PN}-${PV/_p/-patch} +MAJOR_P=${PN}-$(ver_cut 1-2) + +DESCRIPTION="General purpose library and file format for storing scientific data" +HOMEPAGE="https://www.hdfgroup.org/HDF5/" +SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2" +S="${WORKDIR}/${MY_P}" + +LICENSE="NCSA-HDF" +SLOT="0/${PV%%_p*}" +KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~loong ~ppc ~ppc64 ~riscv ~s390 ~sparc ~x86 ~amd64-linux ~x86-linux ~arm64-macos ~x64-macos" +IUSE="cxx debug examples fortran +hl mpi szip test threads unsupported zlib" +RESTRICT="!test? ( test )" +REQUIRED_USE=" + !unsupported? ( + cxx? ( !mpi ) mpi? ( !cxx ) + threads? ( !cxx !mpi !fortran !hl ) + ) +" + +RDEPEND=" + mpi? ( virtual/mpi[romio] ) + szip? ( virtual/szip ) + zlib? ( sys-libs/zlib:= ) +" +DEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}"/${PN}-1.8.9-static_libgfortran.patch + "${FILESDIR}"/${PN}-1.12.2-no-strip-symbols.patch +) + +pkg_setup() { + # Workaround for bug 285148 + tc-export CXX CC AR + + use fortran && fortran-2_pkg_setup + + if use mpi; then + if has_version 'sci-libs/hdf5[-mpi]'; then + ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail." + ewarn "Try to uninstall the current hdf5 prior to enabling mpi support." + fi + + export CC=mpicc + use fortran && export FC=mpif90 + elif has_version 'sci-libs/hdf5[mpi]'; then + ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail." + ewarn "Try to uninstall the current hdf5 prior to disabling mpi support." + fi +} + +src_prepare() { + default + + # Respect Gentoo examples directory + sed \ + -e "s:hdf5_examples:doc/${PF}/examples:g" \ + -i $(find . -name Makefile.am) $(find . -name "run*.sh.in") || die + sed \ + -e '/docdir/d' \ + -i config/commence.am || die + + if ! use examples; then + # bug #409091 + sed -e '/^install:/ s/install-examples//' \ + -i Makefile.am || die + fi + + # Enable shared libs by default for h5cc config utility + sed -i -e "s/SHLIB:-no/SHLIB:-yes/g" bin/h5cc.in || die + hprefixify m4/libtool.m4 + + eautoreconf +} + +src_configure() { + # bug #686620 + use sparc && tc-is-gcc && append-flags -fno-tree-ccp + + econf \ + --disable-static \ + --enable-deprecated-symbols \ + --enable-build-mode=$(usex debug debug production) \ + --with-default-plugindir="${EPREFIX}/usr/$(get_libdir)/${PN}/plugin" \ + $(use_enable cxx) \ + $(use_enable debug codestack) \ + $(use_enable fortran) \ + $(use_enable hl) \ + $(use_enable mpi parallel) \ + $(use_enable test tests) \ + $(use_enable threads threadsafe) \ + $(use_enable unsupported) \ + $(use_with szip szlib) \ + $(use_with threads pthread) \ + $(use_with zlib) +} + +src_install() { + emake DESTDIR="${D}" EPREFIX="${EPREFIX}" install + + # No static archives + find "${ED}" -name '*.la' -delete || die +} diff --git a/sci-libs/scikit-learn/Manifest b/sci-libs/scikit-learn/Manifest index 777211406b5a..c15728c8af50 100644 --- a/sci-libs/scikit-learn/Manifest +++ b/sci-libs/scikit-learn/Manifest @@ -1,3 +1,3 @@ DIST scikit-learn-1.1.2.gh.tar.gz 7104556 BLAKE2B e67e1deddf5a1134b57a146e8271a406cb257ffc92c9719e90f5b9d98e711b68bc67e3367660ecaad61aaec1794bb8999b4dd00b7d56e21eca8fcb2ee72cc9aa SHA512 58789c1e607d7de3339fa3b8928553ca96cef93e8da8fd13612aa78e5ebde8e6a55e3bf7845f9a45b78ed77da6a219d08d2c26318b602f937e0e3debd239293e -EBUILD scikit-learn-1.1.2.ebuild 1605 BLAKE2B 8ee60950a4a4a9b7f942856429c9fc4cfd2e93ccc45b6cd7e668d2fa8eb8f0ef5d8f22a53ab3f8926411aaefdf6e399f14c1128dbfc3760de68574c2d827bc51 SHA512 33200607e53f3dbc110cde6a8c80cd4e57367c2dda07878f15dd935cf5af1c45be430956ea4f30591fa0d01f9f3ca0cdd5e309bac0b494f9886419b222d5408b +EBUILD scikit-learn-1.1.2.ebuild 1629 BLAKE2B b481a2a8c468cf48f9902d8cc72a6ccd8268b3b2546ba8292e9661f57ab70e9e95c7fabd5af48697c043e7ed05960038787981d60caa941e9d3fb7dc99492653 SHA512 239a1f8ee9ebfad2b9e3edd3992fb0d7579cf5f8553bf596a5f63c5e91844dbed7a8e7081236d6b082080e236175971270a83700f99f56cf69e1bd15621edc90 MISC metadata.xml 614 BLAKE2B b5425c2d022592581647c9b97c0ab22bfc2afe347b2e5ea22f141245238f145322f39406c62318ba1e6af1462b2691267b39976bfde38faaf1d28b1d29c4e015 SHA512 74ac79123848bc385c29fcfdc4a1e780529dda685c1deb5eb722f5d4919ee6ac9d80798d52c4af0be0cc8dbbaea3784963dd97e2b7c1258cc2f5605b0bc8907a diff --git a/sci-libs/scikit-learn/scikit-learn-1.1.2.ebuild b/sci-libs/scikit-learn/scikit-learn-1.1.2.ebuild index 205d7e0ab2b7..bf4872aa7465 100644 --- a/sci-libs/scikit-learn/scikit-learn-1.1.2.ebuild +++ b/sci-libs/scikit-learn/scikit-learn-1.1.2.ebuild @@ -15,7 +15,7 @@ SRC_URI="https://github.com/scikit-learn/scikit-learn/archive/${PV}.tar.gz -> ${ LICENSE="BSD" SLOT="0" -KEYWORDS="amd64 ~arm64 ~ppc64 ~riscv ~x86" +KEYWORDS="amd64 ~arm64 ~ppc64 ~riscv ~x86 ~arm64-macos ~x64-macos" IUSE="examples" # Fatal Python error: Segmentation fault -- cgit v1.2.3