From 4187bba080530c5ca1c7dae9c233e88f3fc8f535 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sat, 6 Jul 2024 08:06:16 +0100 Subject: gentoo auto-resync : 06:07:2024 - 08:06:15 --- sci-chemistry/Manifest.gz | Bin 9199 -> 9197 bytes sci-chemistry/wxmacmolplt/Manifest | 3 -- .../wxmacmolplt/files/wxmacmolplt-7.5-glew.patch | 11 ---- .../wxmacmolplt/wxmacmolplt-7.5-r1.ebuild | 48 ------------------ sci-chemistry/xds-bin/Manifest | 6 +-- sci-chemistry/xds-bin/xds-bin-20170930.ebuild | 46 ----------------- sci-chemistry/xds-bin/xds-bin-20240831.ebuild | 56 +++++++++++++++++++++ 7 files changed, 59 insertions(+), 111 deletions(-) delete mode 100644 sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.5-glew.patch delete mode 100644 sci-chemistry/wxmacmolplt/wxmacmolplt-7.5-r1.ebuild delete mode 100644 sci-chemistry/xds-bin/xds-bin-20170930.ebuild create mode 100644 sci-chemistry/xds-bin/xds-bin-20240831.ebuild (limited to 'sci-chemistry') diff --git a/sci-chemistry/Manifest.gz b/sci-chemistry/Manifest.gz index 4e4ba7251c80..1002deb767dc 100644 Binary files a/sci-chemistry/Manifest.gz and b/sci-chemistry/Manifest.gz differ diff --git a/sci-chemistry/wxmacmolplt/Manifest b/sci-chemistry/wxmacmolplt/Manifest index 15e8ec679986..eed90ecfb010 100644 --- a/sci-chemistry/wxmacmolplt/Manifest +++ b/sci-chemistry/wxmacmolplt/Manifest @@ -1,6 +1,3 @@ -AUX wxmacmolplt-7.5-glew.patch 232 BLAKE2B 9e0bd2849cc20664ca4a6b6678d2d78a723ae3e730225355dd70db0cac56d501c14aaa34d86d2ff87932feb950178a7245a943b763bde728f64a07a49ed4ba29 SHA512 cf1f77f9a86224b866f55154316a044314fda47a82de9b5be4ee58ed4ea8f4a07f9540e7060f477249b773e147739f15f43df293110045bdbca9567c60fbd5dc -DIST wxmacmolplt-7.5.tar.gz 1965376 BLAKE2B 01033266ae66a215582a62690e792ca4ae82c8a8885fe277e2e77ee67ff70f02f6a9c10467ea6f3cee15933c6c89ba3c6137c9d29e47322ac4f395a3efd41383 SHA512 a1064d5068136b2a91328c7f912ff57d4741081d6d61437e7b4567fbf732917485b391493d637b8892bdad50b539363cfa9c778bb35407a9c0a2bfed20e42bc0 DIST wxmacmolplt-7.7.2.tar.gz 2012054 BLAKE2B 0e419d9700dd6461a4520722f43cc36cdaa2f51920868a868bdd58db169ed92f88c71d4ce0d79446c4c564eb794f7327b0eef5f87d9ab5a639829287b29482d6 SHA512 bf4b3126bbc8657a604f8dee8b022a17dbf4633a877318ceb45d803456acb0da007c2edae23f581fb6eeafd6ea411d147fbc076acb07aba3dcb8ee55b9c486fa -EBUILD wxmacmolplt-7.5-r1.ebuild 986 BLAKE2B 67cccea1d2e7886ee67f78ac54548047c2fe889dedfef45956a4614149d5597fd0376f0f01fd59085c9f925faa2284c2c22d4bae2d8ee98f2eca3be6b06e96ed SHA512 6e1d9051621a36deb7aeb997aa93a0b5becea1b3f7512fc56d2ee97788b5a9bedace25fb40a7a7b4e77a76830e7f8aa61ad0c32ea3e1afdb66b744197d50daf0 EBUILD wxmacmolplt-7.7.2.ebuild 982 BLAKE2B edc3b4383a20ec6039472319273947988aa77de31622a40bd604857560684612d79dd6743c2048fc423e928c5a9c8b45e38899568a68de32069591b7593ef2b7 SHA512 99e5cf215f4ef74d6c7480b9aa1732cc1eda079634e2e09e61b83f080b9093febea8d48c77d4e5dbf20bc32c3eecfef9e26b233ec7e549818b3714b13e8ac82f MISC metadata.xml 717 BLAKE2B e2344ebd6332d01a309edb0951483adff1342584fd1a9a6b6890c4cae7bba86f8e9f874b4200726845c1aed7712a4459fddda27ae544ee98da63098e897b499e SHA512 169c1aa0ff6cdfe7ed5e155bd1bdb2ea817c59501dde6c7caa1d25bc4826341516731e3082bf7960cc6f87fdf2a26983c04e26baea21b7bdff815eef45e4521b diff --git a/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.5-glew.patch b/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.5-glew.patch deleted file mode 100644 index 809d7723cbb0..000000000000 --- a/sci-chemistry/wxmacmolplt/files/wxmacmolplt-7.5-glew.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- a/configure.ac -+++ b/configure.ac -@@ -20,7 +20,7 @@ - ;; - *) - HOST=LINUX -- LIBGL="-lGL -lGLU" -+ LIBGL=`${PKG_CONFIG} --libs glu glew` - ;; - esac - AM_CONDITIONAL(HOST_IS_MSW, [test "x$HOST" == xMSW]) diff --git a/sci-chemistry/wxmacmolplt/wxmacmolplt-7.5-r1.ebuild b/sci-chemistry/wxmacmolplt/wxmacmolplt-7.5-r1.ebuild deleted file mode 100644 index d100dad51cbc..000000000000 --- a/sci-chemistry/wxmacmolplt/wxmacmolplt-7.5-r1.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -WX_GTK_VER=3.0 -inherit autotools desktop toolchain-funcs wxwidgets - -DESCRIPTION="Chemical 3D graphics program with GAMESS input builder" -HOMEPAGE="http://www.scl.ameslab.gov/MacMolPlt/" -SRC_URI="https://wxmacmolplt.googlecode.com/files/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -RDEPEND=" - media-libs/glew:0= - media-libs/mesa[X(+)] - x11-libs/wxGTK:${WX_GTK_VER}[X,opengl]" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -PATCHES=( "${FILESDIR}"/${P}-glew.patch ) - -src_prepare() { - default - sed \ - -e "/^dist_doc_DATA/d" \ - -i Makefile.am || die "Failed to disable installation of LICENSE file" - eautoreconf -} - -src_configure() { - tc-export PKG_CONFIG - - setup-wxwidgets unicode - econf \ - --with-glew \ - --without-ming -} - -src_install() { - default - - doicon resources/${PN}.png - make_desktop_entry ${PN} wxMacMolPlt ${PN} "Science;DataVisualization;" -} diff --git a/sci-chemistry/xds-bin/Manifest b/sci-chemistry/xds-bin/Manifest index f4e1a6e0072a..09c641ceac9d 100644 --- a/sci-chemistry/xds-bin/Manifest +++ b/sci-chemistry/xds-bin/Manifest @@ -1,4 +1,4 @@ -DIST XDS-INTEL64_Linux_x86_64-20170930.tar.gz 9501598 BLAKE2B 33eea09210e9196859f62e66770aef3b34ace7d0cbe50607ef03ba37943fdb13ddf570b53cb2a7e668e650284ff245767a9cca9f6595de9fdb1815bb9625b56e SHA512 8da1d75633e8bf8495c30926a622f57aa0a51ea3b724101c96da6fae0a303860a4a4a8eaf3ecdf66948f18e702211aab3800760ca498c4562e947e3f94c25a4d -DIST XDS_html_doc-20170930.tar.gz 117249 BLAKE2B 81e0c216eee38f21acc4dba299a20c4790f4aa1dc58e2d0dab5474784bf01842db41ab869b6d36cdfc9a31771e0bcad41b062bbf000771552c7de36f36a2291e SHA512 bbc24eeb0f8a63e6186906b0c0ee67efa83d1cdd169b091878c323455e2448ee6cb1667467bc9701b4e1839af2d10d4cb3e8f8d080b7dd5e449fda03c2aa8f89 -EBUILD xds-bin-20170930.ebuild 1174 BLAKE2B 9a5a18719f52eab2f114ce58ba6ade158ae138b70c092967d5ed0adeae6867963c4cf6391f6bdedd0296a56fad46ab1214cde0faa02c4dab701d572268f3b8f6 SHA512 47963c7d31eaa1d6f2eaf172ef67a7d448e3bec36a9e6da35f85532bb878996ef6791977efd06874e0d3d790820306214e190af1ea07bca30f3320ed64605470 +DIST XDS-INTEL64_Linux_x86_64-20240831.tar.gz 11067644 BLAKE2B d8687af54aad5694937cc633f511766147bb52616a388f03d0d052239a0f81b6e3692be0f234ea012905c89e13f2ef45e0254babe1e23598d954b2e65ed93d20 SHA512 773f074237311c8ea2d6dda974250cf906f84db02589bb40b646ff77afac2ee7d978d272993ab5f9b9f55c9dde7965b8e4fba7222349bf3665679f90ec6ef658 +DIST XDS_html_doc-20240831.tar.gz 151503 BLAKE2B c559d1a7b4ca75b00d5d37d2c9248fea177cca6a2dac5a9b42443430477337f8bc99add4f89f9eac2d57592b6b5843e167d4e86c6c3ce0ccbb5ba91234d534d8 SHA512 5d3a20dd0b6458c5bfd8ed46f4963fd53f59208fff72278acac19237c988537bae9d7b3c993342c8a9abc03e2ab5aed98a002caeb853fb87c19ae19a32f05faa +EBUILD xds-bin-20240831.ebuild 1459 BLAKE2B a03054c1af3d8ad3b972a08ca0bf6e07d252b047ad3fea490e8e71d751d33e9969d7853f1b00b6ee2080d5e10bfefd8a0e085a9eb4f25cbbf9f39ad3a55ff445 SHA512 4af84bc488142b629636b3a9516d3b56944b4078c865ab10c5acc0a8898b105c5677ad9bb588cc58823a6d34275dd8c6eb9610116ff748e3c55fc31ce75a2c79 MISC metadata.xml 272 BLAKE2B 531e98b72776bbe9126811b70943add0f6f43141b01cb75b17ac2c8d1cfb6a9b349022fd411894d2b8eeb0612a73db10aed4ba71f9624bd6dbd172a05fca2c76 SHA512 04f5575703aaaa95e575460ae3de428d3da173b3b741ab52b4aad31e381fef78b325f49f99622ec26a65024437759ea013fc525bd63ee553003c71afcc40d10c diff --git a/sci-chemistry/xds-bin/xds-bin-20170930.ebuild b/sci-chemistry/xds-bin/xds-bin-20170930.ebuild deleted file mode 100644 index 4e609092fa03..000000000000 --- a/sci-chemistry/xds-bin/xds-bin-20170930.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -DESCRIPTION="Software for processing single-crystal X-ray monochromatic diffraction data" -HOMEPAGE="http://xds.mpimf-heidelberg.mpg.de/" -SRC_URI=" - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS-INTEL64_Linux_x86_64.tar.gz -> XDS-INTEL64_Linux_x86_64-${PV}.tar.gz - ftp://ftp.mpimf-heidelberg.mpg.de/pub/kabsch/XDS_html_doc.tar.gz -> XDS_html_doc-${PV}.tar.gz" - -LICENSE="free-noncomm" -SLOT="0" -KEYWORDS="-* ~amd64" -IUSE="smp" - -QA_PREBUILT="opt/xds-bin/*" - -src_unpack() { - default - mv XDS-* "${S}" || die -} - -src_install() { - local HTML_DOCS=( "${WORKDIR}"/XDS_html_doc/. ) - einstalldocs - - local i suffix=$(usex smp '_par' '') - exeinto /opt/${PN} - doexe * - - for i in xds mintegrate mcolspot xscale; do - dosym ../${PN}/${i}${suffix} /opt/bin/${i} - done - - for i in 2cbf cellparm forkcolspot forkintegrate merge2cbf pix2lab xdsconv; do - dosym ../${PN}/${i} /opt/bin/${i} - done - - insinto /usr/share/${PN}/INPUT_templates - doins -r "${WORKDIR}"/XDS_html_doc/html_doc/INPUT_templates/. -} - -pkg_postinst() { - elog "This package will expire on September 30, 2017" -} diff --git a/sci-chemistry/xds-bin/xds-bin-20240831.ebuild b/sci-chemistry/xds-bin/xds-bin-20240831.ebuild new file mode 100644 index 000000000000..4fcd833d3071 --- /dev/null +++ b/sci-chemistry/xds-bin/xds-bin-20240831.ebuild @@ -0,0 +1,56 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DESCRIPTION="Software for processing single-crystal X-ray monochromatic diffraction data" +HOMEPAGE="https://xds.mr.mpg.de" +SRC_URI=" + https://xds.mr.mpg.de/XDS-INTEL64_Linux_x86_64.tar.gz -> XDS-INTEL64_Linux_x86_64-${PVR}.tar.gz + https://xds.mr.mpg.de/XDS_html_doc.tar.gz -> XDS_html_doc-${PVR}.tar.gz" + +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="-* ~amd64" +IUSE="smp" +RESTRICT="fetch" + +QA_PREBUILT="opt/xds-bin/*" + +# The web site uses a certificate that is not in the system certificate store. +# Use a web browser to download, instead. +pkg_nofetch() { + elog "Please visit" + elog "https://xds.mr.mpg.de/html_doc/downloading.html" + elog "and download XDS-INTEL64_Linux_x86_64.tar.gz and XDS_html_doc.tar.gz." + elog "Please save them as: ${A}. in your \${DISTDIR}" +} + +src_unpack() { + default + mv XDS-* "${S}" || die +} + +src_install() { + local HTML_DOCS=( "${WORKDIR}"/XDS_html_doc/. ) + einstalldocs + + local i suffix=$(usex smp '_par' '') + exeinto /opt/${PN} + doexe * + + for i in xds mintegrate mcolspot xscale; do + dosym ../${PN}/${i}${suffix} /opt/bin/${i} + done + + for i in 2cbf cellparm forkxds merge2cbf pix2lab xdsconv; do + dosym ../${PN}/${i} /opt/bin/${i} + done + + insinto /usr/share/${PN}/INPUT_templates + doins -r "${WORKDIR}"/XDS_html_doc/html_doc/INPUT_templates/. +} + +pkg_postinst() { + elog "This package will expire on August 31, 2024" +} -- cgit v1.2.3