From dd762ff83c330186ee2ede002e08b2f780cddd51 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sun, 14 Jul 2019 11:04:34 +0100 Subject: gentoo resync : 14.07.2019 --- sci-chemistry/modeller/Manifest | 2 + sci-chemistry/modeller/modeller-9.22.ebuild | 145 ++++++++++++++++++++++++++++ 2 files changed, 147 insertions(+) create mode 100644 sci-chemistry/modeller/modeller-9.22.ebuild (limited to 'sci-chemistry/modeller') diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest index cfb2192a463e..29be65387604 100644 --- a/sci-chemistry/modeller/Manifest +++ b/sci-chemistry/modeller/Manifest @@ -1,3 +1,5 @@ DIST modeller-9.20.tar.gz 34909796 BLAKE2B d89c81823c4d7784a7b3d64fdb01158a973edc7d8b316c773e038ba8645797c543d5bc58c1bff5462ae5975a6c2796f4b2d500641d226c3b2281cf794cfeba8d SHA512 667edeeda0a9038258f6932b3cef22a1e9d0fe47f47bd2ac612e7bac7f23a863f5a65cfd93abfa405310e7fb7b305d53e71d6c6e930613b0dbd43b24dcd5919a +DIST modeller-9.22.tar.gz 34953371 BLAKE2B 3bf8828b38f22955dea973cfe54cbd2f77bf021900bd5aa3c75f083b12e2a7199c3173de526acfeab005c0606816bac347b9bdfb6b62d5e3db9c9e18fed99ac4 SHA512 0056f09a07d6e2b565c8f4accca48ad176c9d32634b75bc4db60a187d56f22ef1710296dfd31bf27f496c5ed100146420be7cfdb135ca8b2b0fac7d7f5fa877f EBUILD modeller-9.20.ebuild 3694 BLAKE2B 59c5b091ae6c539f5fdfc962540f7af3db431b17b0e25b092822592b42db21dd70b20e25061008f787de8eb8e515bb4c4ee35a532ace514c28ac30625b08fb15 SHA512 19b8372748da5d9e6b3335a88e0dd6a29d25d2dee559cd533333480954ce633f31a2f878c45f425f96cc90ae6aed33cc6df400ab95c542cda424416d069c8764 +EBUILD modeller-9.22.ebuild 3679 BLAKE2B 8e04f3bcc3408e56397674a4839525cddb4b25d8558829e45f24e38208b08364a7b342ff52851a7265cd10cdee609b6f31c3b43031f5607684318a27a1cd0cd2 SHA512 f07e2b30ed1fecefdc3e25ed287b4bc4af285ec9fef8f461a6c0320d6f8c73166a481951f7baa0ca000dd94940c7293b4b05a8a3e34a826be968067bfbe973b8 MISC metadata.xml 265 BLAKE2B d5a98b9309829a0486c4b8a4336c2d24a0fe34e926d52afd0cc87e16fcc887ca4c18851e58afb33866823121fa8f221a90e0d726dbd85552a4caf66cf03b7b4a SHA512 470f6c178e88c4e83afa46d5e901a45fc2427a779ae832df7fa2d6e25e9e8b4ce77cd3a8fe191e6242d6df3b673f0de6b4f90f1e147aa8b8dd566f18163cc73a diff --git a/sci-chemistry/modeller/modeller-9.22.ebuild b/sci-chemistry/modeller/modeller-9.22.ebuild new file mode 100644 index 000000000000..57f11e16861f --- /dev/null +++ b/sci-chemistry/modeller/modeller-9.22.ebuild @@ -0,0 +1,145 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 eutils multilib + +DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures" +HOMEPAGE="https://salilab.org/modeller/" +SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz" + +LICENSE="modeller" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="doc examples" +SLOT="0" + +RESTRICT="mirror" + +DEPEND=">=dev-lang/swig-1.3" +RDEPEND="" + +INPATH="${EPREFIX}"/opt/modeller${ver} + +QA_PREBUILT="/opt/*" + +pkg_setup() { + case ${ARCH} in + x86) + EXECTYPE="i386-intel8";; + amd64) + EXECTYPE="x86_64-intel8";; + *) + die "Your arch "${ARCH}" does not appear supported at this time.";; + esac +} + +python_prepare_all(){ + sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die + distutils-r1_python_prepare_all +} + +python_compile(){ + cd src/swig || die + swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die + distutils-r1_python_compile +} + +python_install() { + cd src/swig || die + distutils-r1_python_install +} + +python_install_all(){ + cd "${S}" || die + sed \ + -e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \ + -e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \ + -i bin/modscript || die + + sed -e "s;@TOPDIR\@;\"${INPATH}\";" \ + -e "s;@EXETYPE\@;${EXECTYPE};" \ + bin/modpy.sh.in > "${T}/modpy.sh" + + insinto ${INPATH} + doins -r modlib + python_foreach_impl python_domodule modlib/modeller + + insinto ${INPATH}/bin + doins -r bin/{lib,*top} + + exeinto ${INPATH}/bin + doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh + + python_foreach_impl python_doscript bin/modslave.py + dosym ${INPATH}/bin/modscript /opt/bin/mod${PV} + dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh + + exeinto ${INPATH}/lib/${EXECTYPE}/ + doexe lib/${EXECTYPE}/lib* + dosym libmodeller.so.8 ${INPATH}/lib/${EXECTYPE}/libmodeller.so + dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.8 /usr/$(get_libdir)/libmodeller.so.8 + + use doc && HTML_DOCS=( doc/. ) + distutils-r1_python_install_all + + if use examples; then + insinto /usr/share/${PN}/ + doins -r examples + fi + + insinto /etc/revdep-rebuild + cat >> "${T}"/40-${PN} <<- EOF + SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/" + EOF + doins "${T}"/40-${PN} +} + +pkg_postinst() { + if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then + echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py + fi + + if grep -q license ${INPATH}/modlib/modeller/config.py; then + einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py" + else + ewarn "Obtain a license Key from" + ewarn "http://salilab.org/modeller/registration.html" + ewarn "And run this before using modeller:" + ewarn "emerge --config =${CATEGORY}/${PF}" + ewarn "That way you can [re]enter your license key." + fi +} + +pkg_postrm() { + ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py" + ewarn "that you need to remove to completely get rid of modeller." +} + +pkg_config() { + ewarn "Your license key is NOT checked for validity here." + ewarn " Make sure you type it in correctly." + eerror "If you CTRL+C out of this, modeller will not run!" + while true + do + einfo "Please enter your license key:" + read license_key1 + einfo "Please re-enter your license key:" + read license_key2 + if [[ "$license_key1" == "" ]] + then + echo "You entered a blank license key. Try again." + else + if [[ "$license_key1" == "$license_key2" ]] + then + echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py" + einfo "Thank you!" + break + else + eerror "Your license key entries do not match. Try again." + fi + fi + done +} -- cgit v1.2.3