From c62f31f933c259fc576a912eed0856ca03346fc4 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Tue, 9 Aug 2022 14:16:10 +0100 Subject: gentoo auto-resync : 09:08:2022 - 14:16:10 --- sci-biology/Manifest.gz | Bin 20165 -> 20002 bytes sci-biology/transfac/Manifest | 3 -- sci-biology/transfac/metadata.xml | 16 ----------- sci-biology/transfac/transfac-3.2-r2.ebuild | 42 ---------------------------- 4 files changed, 61 deletions(-) delete mode 100644 sci-biology/transfac/Manifest delete mode 100644 sci-biology/transfac/metadata.xml delete mode 100644 sci-biology/transfac/transfac-3.2-r2.ebuild (limited to 'sci-biology') diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz index d68517e2f54a..e25a74af0c60 100644 Binary files a/sci-biology/Manifest.gz and b/sci-biology/Manifest.gz differ diff --git a/sci-biology/transfac/Manifest b/sci-biology/transfac/Manifest deleted file mode 100644 index 7f05368bd6ca..000000000000 --- a/sci-biology/transfac/Manifest +++ /dev/null @@ -1,3 +0,0 @@ -DIST transfac32.tar.Z 3346266 BLAKE2B 3bd6cfacd7e4ea75946dce5e77bae84a7d199daa84750fe21cd3c393fa66cdf09518a4043ac15f2fbe7bc19f001482e14b65743f1a89aec34bcb28409277370e SHA512 d7004f90e57fa2b8839714e50b9ce1f67357db404adc1a5caddd1e9b86c8e3e9f4e85bbda15c4d6afed85da82ae8615f63260f9a3df9cfd79897d38896893b9f -EBUILD transfac-3.2-r2.ebuild 1002 BLAKE2B 1fbb9b280ffe7afdf5809a312ba1ea8944b2ca16a57d3c3a74593c41e0ef3e8f826e139dd3a40c684634f56f2eff2569dcfca52a6e7b5f00f42d20c56435e59a SHA512 131b794d586366ca5441e364087a413d72cb8c66d550bf13cca522fa2c1851a47064064c9d22870b627931ec46778fb1a03309fe39843b9b3d518507ed423c75 -MISC metadata.xml 697 BLAKE2B cfcb8ec7dfc62e50cbec8a92bb511e39577203ca2743a6e9b845a257553428cfb0ef4b5793309c59dae581e0faa58f077a19aee9c8036dc16dccaf01dddeb32a SHA512 0cf54f59885bff6391873c4db379f321c08e0357e24335fe18debcb52c6126ba44feb03fb3a1edd7731460395601b3eaa4e9a79f7faca2f018892831672c0587 diff --git a/sci-biology/transfac/metadata.xml b/sci-biology/transfac/metadata.xml deleted file mode 100644 index daa74b549bb1..000000000000 --- a/sci-biology/transfac/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ - - - - - sci-biology@gentoo.org - Gentoo Biology Project - - - TRANSFAC® is a database of eukaryotic transcription factors, of their - genomic binding sites and DNA-binding profiles. TRANSFAC 3.2 is an old - public version available at the European Bioinformatics Institute. - TRANSFAC® is currently maintained by the BIOBASE company. Altough they - offer public access to a more recent version of the database, they - offer no free downloadable version. - - diff --git a/sci-biology/transfac/transfac-3.2-r2.ebuild b/sci-biology/transfac/transfac-3.2-r2.ebuild deleted file mode 100644 index 2fce474da2ad..000000000000 --- a/sci-biology/transfac/transfac-3.2-r2.ebuild +++ /dev/null @@ -1,42 +0,0 @@ -# Copyright 1999-2022 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -DESCRIPTION="A database of eucaryotic transcription factors" -HOMEPAGE="http://www.gene-regulation.com/pub/databases.html" -SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}32.tar.Z" -S="${WORKDIR}" - -LICENSE="public-domain" -SLOT="3" -# Minimal build keeps only the indexed files (if applicable) and the documentation. -# The non-indexed database is not installed. -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="emboss minimal" - -BDEPEND="emboss? ( sci-biology/emboss )" -RDEPEND="${BDEPEND}" - -src_compile() { - if use emboss; then - einfo - einfo "Indexing TRANSFAC for usage with EMBOSS" - EMBOSS_DATA="." tfextract -auto -infile class.dat || die "Indexing TRANSFAC failed" - einfo - fi -} - -src_install() { - newdoc readme.txt README - - if ! use minimal; then - insinto /usr/share/transfac-${SLOT} - doins *.dat - fi - - if use emboss; then - insinto /usr/share/EMBOSS/data - doins tf* - fi -} -- cgit v1.2.3