From 4f2d7949f03e1c198bc888f2d05f421d35c57e21 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Mon, 9 Oct 2017 18:53:29 +0100 Subject: reinit the tree, so we can have metadata --- sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch (limited to 'sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch') diff --git a/sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch b/sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch new file mode 100644 index 000000000000..e8168bb91438 --- /dev/null +++ b/sci-biology/tophat/files/tophat-2.1.1-fix-c++14.patch @@ -0,0 +1,14 @@ +Fix building with C++14, which errors out due to broken perfect forwarding signature. +See also: https://bugs.gentoo.org/show_bug.cgi?id=594544 + +--- a/src/tophat_reports.cpp ++++ b/src/tophat_reports.cpp +@@ -2705,7 +2705,7 @@ + junction_stat.gtf_match = true; + junction_stat.accepted = true; + +- gtf_junctions.insert(make_pair(Junction(ref_id, left_coord, right_coord, antisense), junction_stat)); ++ gtf_junctions.insert(make_pair(Junction(ref_id, left_coord, right_coord, antisense), junction_stat)); + } + } + fprintf(stderr, "Loaded %d GFF junctions from %s.\n", (int)(gtf_junctions.size()), gtf_juncs.c_str()); -- cgit v1.2.3