From b49088575eb777ced2551f484da86317332d6087 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Sat, 24 Jul 2021 02:11:45 +0100
Subject: gentoo resync : 24.07.2021

---
 sci-biology/samtools/Manifest                |  2 +-
 sci-biology/samtools/samtools-1.10-r1.ebuild | 56 ++++++++++++++++++++++++++++
 sci-biology/samtools/samtools-1.10.ebuild    | 56 ----------------------------
 3 files changed, 57 insertions(+), 57 deletions(-)
 create mode 100644 sci-biology/samtools/samtools-1.10-r1.ebuild
 delete mode 100644 sci-biology/samtools/samtools-1.10.ebuild

(limited to 'sci-biology/samtools')

diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest
index 6154bc4f7273..66f09ef40483 100644
--- a/sci-biology/samtools/Manifest
+++ b/sci-biology/samtools/Manifest
@@ -2,5 +2,5 @@ AUX samtools-0.1.20-buildsystem.patch 6737 BLAKE2B 71445f57735903bccc2720a32f42b
 DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e0c9f25013ed0d039bfe8ef61108600d917f8c9d356e98aca632795b4eb0f01ea1b54526a652577fb74a38a433c2 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5
 DIST samtools-1.10.tar.bz2 4721173 BLAKE2B 103c71ec5740eac151a4fc40d67286ee00123c7befd5f654cf5c89812bda44f82b38ab662a4a3216ac84434cabab49500b903612137f97f89a7ea38063e8fc08 SHA512 828ec2638592b440e06b81eafc57634416ab54dac6caaecb06f22a90e9bf99da1fd8bb54509cb98591899c4e097ac9038ee5d57ea7bfe1a18967cde4018d840a
 EBUILD samtools-0.1.20-r4.ebuild 2049 BLAKE2B d377712eaca931258b37645e6a6b3cc379fdb550ef83a0c272a3eb564d7753185fea53416973e4fdf2c25b79475a81ae72b646ce22c570c934e4eabce8a9ded6 SHA512 c0d387f715ebf1f746ea4e4a7eab85a86ef0bff646c9a69639b17ef02e93c39982941d7eb811a6d67b0e635c9c4e05924d2b89a6809c3bd0592db91894dab4aa
-EBUILD samtools-1.10.ebuild 991 BLAKE2B 206a77657bc9a82d6a7536d030b726a0450bbba406e4e7ec9cc670ee530b87d871111952c850d4008c436f81d3daeba802eb4a3442b59ff9ab0f5864bc4fcf21 SHA512 efb1f235e3e3996599df79317e9c7c2ca5434b666a93f91c495550ac4846905e99d96dd1a6876d22a489b684bf24a90c6f6afb4cec5677c5c45f28f0c4f35b35
+EBUILD samtools-1.10-r1.ebuild 993 BLAKE2B 69080337f15d653be56680f3183c2eab3c1813805e3ffc3be1d6dc0e04264a063ae758b694ccb1ff097e952cad736a387de02905ca4f7d4af779233d9e1fced2 SHA512 15dab01b933e56fc83b71f68b2c52c69b115df19f72599e4b4d9d959f9035a468e3ad825cb2e12a80ba558b953879d1b6f8e9dc50922d099c375312dd7580040
 MISC metadata.xml 408 BLAKE2B fcff66a327d0396cd0a1b0cb5c00aeb1bc728759d6d39933651f63e22d966af9c33d14f149d2ee008ca48266da1f24ff5919942d143d066898dc635673153df9 SHA512 71a9d6a299db7717ccd851a4519354c1fd7a373dd79af6fa216ebc9b6b0ccbbccc4394ca00c3f842afee492702f079268c5c83815eaaafa446bf0f37750c62ff
diff --git a/sci-biology/samtools/samtools-1.10-r1.ebuild b/sci-biology/samtools/samtools-1.10-r1.ebuild
new file mode 100644
index 000000000000..940895616906
--- /dev/null
+++ b/sci-biology/samtools/samtools-1.10-r1.ebuild
@@ -0,0 +1,56 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit autotools toolchain-funcs
+
+DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
+HOMEPAGE="http://www.htslib.org/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
+
+RDEPEND="
+	dev-lang/perl
+	=sci-libs/htslib-${PV}*
+	sys-libs/ncurses:=[unicode(+)]
+	sys-libs/zlib:="
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
+
+src_prepare() {
+	default
+
+	# remove bundled htslib
+	rm -r htslib-* || die
+
+	eautoreconf
+}
+
+src_configure() {
+	econf \
+		--with-ncurses \
+		--with-htslib=system \
+		CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw)"
+}
+
+src_compile() {
+	emake AR="$(tc-getAR)"
+}
+
+src_test() {
+	# the tview test diffs expect 80-columns output
+	unset COLUMNS
+
+	default
+}
+
+src_install() {
+	default
+
+	dodoc -r examples
+	docompress -x /usr/share/doc/${PF}/examples
+}
diff --git a/sci-biology/samtools/samtools-1.10.ebuild b/sci-biology/samtools/samtools-1.10.ebuild
deleted file mode 100644
index 0ef5e6c19e8e..000000000000
--- a/sci-biology/samtools/samtools-1.10.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-inherit autotools toolchain-funcs
-
-DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats"
-HOMEPAGE="http://www.htslib.org/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-
-RDEPEND="
-	dev-lang/perl
-	=sci-libs/htslib-${PV}*
-	sys-libs/ncurses:0=[unicode]
-	sys-libs/zlib:="
-DEPEND="${RDEPEND}"
-BDEPEND="virtual/pkgconfig"
-
-src_prepare() {
-	default
-
-	# remove bundled htslib
-	rm -r htslib-* || die
-
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		--with-ncurses \
-		--with-htslib=system \
-		CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw)"
-}
-
-src_compile() {
-	emake AR="$(tc-getAR)"
-}
-
-src_test() {
-	# the tview test diffs expect 80-columns output
-	unset COLUMNS
-
-	default
-}
-
-src_install() {
-	default
-
-	dodoc -r examples
-	docompress -x /usr/share/doc/${PF}/examples
-}
-- 
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