From 4f2d7949f03e1c198bc888f2d05f421d35c57e21 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Mon, 9 Oct 2017 18:53:29 +0100
Subject: reinit the tree, so we can have metadata

---
 .../piler/files/piler-1.0-fix-build-system.patch   | 34 ++++++++++++++++++++++
 sci-biology/piler/files/piler-1.0-glibc-2.10.patch | 12 ++++++++
 2 files changed, 46 insertions(+)
 create mode 100644 sci-biology/piler/files/piler-1.0-fix-build-system.patch
 create mode 100644 sci-biology/piler/files/piler-1.0-glibc-2.10.patch

(limited to 'sci-biology/piler/files')

diff --git a/sci-biology/piler/files/piler-1.0-fix-build-system.patch b/sci-biology/piler/files/piler-1.0-fix-build-system.patch
new file mode 100644
index 000000000000..78a72f1b4850
--- /dev/null
+++ b/sci-biology/piler/files/piler-1.0-fix-build-system.patch
@@ -0,0 +1,34 @@
+Make build system honour user variables
+
+--- a/Makefile
++++ b/Makefile
+@@ -1,6 +1,4 @@
+-CFLAGS = -O3 -march=pentiumpro -mcpu=pentiumpro -funroll-loops -Winline -DNDEBUG=1
+-LDLIBS = -lm -static
+-# LDLIBS = -lm
++LDLIBS = -lm
+ 
+ OBJ = .o
+ EXE =
+@@ -8,18 +6,13 @@
+ RM = rm -f
+ CP = cp
+ 
+-GPP = g++
+-LD = $(GPP) $(CFLAGS)
+-CPP = $(GPP) -c $(CFLAGS) 
+-CC = gcc -c $(CFLAGS) 
+-
+ all: piler
+ 
+ CPPSRC = $(sort $(wildcard *.cpp))
+ CPPOBJ	= $(subst .cpp,.o,$(CPPSRC))
+ 
+-$(CPPOBJ): %.o: %.cpp
+-	$(CPP) $< -o $@
++%.o: %.cpp
++	$(CXX) $(CXXFLAGS) -DNDEBUG $(CPPFLAGS) -c $< -o $@
+ 
+ piler: $(CPPOBJ)
+-	$(LD) -o piler $(CPPOBJ) $(LDLIBS)
++	$(CXX) $(LDFLAGS) $(CXXFLAGS) -o piler $(CPPOBJ) $(LDLIBS)
diff --git a/sci-biology/piler/files/piler-1.0-glibc-2.10.patch b/sci-biology/piler/files/piler-1.0-glibc-2.10.patch
new file mode 100644
index 000000000000..4c7f124c5e3d
--- /dev/null
+++ b/sci-biology/piler/files/piler-1.0-glibc-2.10.patch
@@ -0,0 +1,12 @@
+diff -ur piler.orig/gff.cpp piler/gff.cpp
+--- piler.orig/gff.cpp	2004-12-18 01:25:29.000000000 +0200
++++ piler/gff.cpp	2009-08-09 17:22:33.000000000 +0300
+@@ -70,7 +70,7 @@
+ 		const char *Attrs = Fields[8];
+ 
+ 	// Truncate attrs if comment found
+-		char *Pound = strchr(Attrs, '#');
++		char *Pound = const_cast <char*> (strchr(Attrs, '#'));
+ 		if (0 != Pound)
+ 			*Pound = 0;
+ 
-- 
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