From 2719f73b6813d11d13a9650cdd2ab8ec6e69385d Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@koprulu.sector>
Date: Sat, 9 Jul 2022 15:43:36 +0100
Subject: gentoo resync : 09.07.2022

---
 sci-biology/phred/Manifest               |  2 +-
 sci-biology/phred/phred-071220-r1.ebuild | 50 --------------------------------
 sci-biology/phred/phred-071220-r2.ebuild | 46 +++++++++++++++++++++++++++++
 3 files changed, 47 insertions(+), 51 deletions(-)
 delete mode 100644 sci-biology/phred/phred-071220-r1.ebuild
 create mode 100644 sci-biology/phred/phred-071220-r2.ebuild

(limited to 'sci-biology/phred')

diff --git a/sci-biology/phred/Manifest b/sci-biology/phred/Manifest
index 161f89dffb9d..7fc9ef8e7c6a 100644
--- a/sci-biology/phred/Manifest
+++ b/sci-biology/phred/Manifest
@@ -1,5 +1,5 @@
 AUX phred-071220-fix-build-system.patch 1981 BLAKE2B 0c9ae75ecf54eadd1d6cd3cfeed5d2f949f234b77d4f329133e2c176207410e93a35341c43636c5b2f742a2ee2d20825cf79bb65d5dac43ba28fc07f7c6bb69b SHA512 7647f6f6e9a1ae51cbf1aa3e39b337288e22fc26a95fdd88f92ce43fc6c0ef6ff59ec26919d14dfefff70be48e4a5604ddefef98bddf5d1d14d1e656665c878d
 AUX phred-071220-fix-qa.patch 787 BLAKE2B 79f687dc1e51dd51e9f97886e0ada9b515d7e4255dff0ec3e81dccb2103ba8b4bee691c8a5b9a321cbdde5576fe8d80dbadafdb740c2cdee81fe9748255084ab SHA512 27811a834358d0e1bf8281882e0420e0eb6bd9586871c8c72a4de79badc9539ea8e9258b9c3a3bf8ca1d3f6924d61abce2dcc0c0ed3b64e5fa53d4548109f5bc
 DIST phred-dist-071220.b-acd.tar.gz 357767 BLAKE2B ae1180f54eaa3631a4e32c2ffe388b35745302e3d014c8fa893119e7e488d4bb4316f7ee0588cd12db5cbbc23033f689f4a0a487cdc7fe42e8c7a67ceb3c43ae SHA512 0a6b0a733e6dcc0495eaab720b75f8e5815df494d0a773b8b8336d5208321c2ba475921084835a769367ec51aed156585ab97346a510100d4337e3215ec75276
-EBUILD phred-071220-r1.ebuild 978 BLAKE2B c2262024808c5f0fe203ff301964ae0b546de279199cdc1ed9c7ab3ee89e5d68f6285e4726bb9a28f8e22091c177918103dc06cde7501e7ce2b4ee5b78f313c6 SHA512 f66790ce585e4747c4db2eab8cb4c2be63da903510d64bb395ec74173a8b150524ed7ae1149ccd78876dfafb59bbcf2572cbff3bd5b4cab8642112b26a151482
+EBUILD phred-071220-r2.ebuild 942 BLAKE2B 0036b7fbe0891c0a153713fb7a17a12aff626a50ecd1609d6bde5e4788eca5e9d9a13aade9c43e22edcb3796ca4b9ef427e258eded270db7dec532f202986a63 SHA512 beec976e7dfdac8b7f539b680a6240b9a8489d8f35e23f831816be1df356cedf28f0c21109eb605a6e81827aa69298d0b18e3e2bea129ee9d552bb100240246f
 MISC metadata.xml 268 BLAKE2B a4d67334cdad8626d60e46b677ee1c83f569e5e20b3739a7664bb33be1829f8478af35e135bf734a6ff151b8543ea6c4ecafbf822cee8189f7e7096bd9698711 SHA512 59d3d8213b1a219396b74b6f4188c01e1cb4eb1c63e6792ce1e7fdb8000d1a4625919337ff77288ca7f7e07d9753f481d2381a06f554012633cd678194c980de
diff --git a/sci-biology/phred/phred-071220-r1.ebuild b/sci-biology/phred/phred-071220-r1.ebuild
deleted file mode 100644
index bf7a0c7338cb..000000000000
--- a/sci-biology/phred/phred-071220-r1.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit toolchain-funcs
-
-DESCRIPTION="A base caller for Sanger DNA sequencing"
-HOMEPAGE="http://phrap.org/phredphrapconsed.html"
-SRC_URI="phred-dist-071220.b-acd.tar.gz"
-
-LICENSE="phrap"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND=""
-
-S="${WORKDIR}"
-
-RESTRICT="fetch"
-PATCHES=(
-	"${FILESDIR}/${PN}-071220-fix-build-system.patch"
-	"${FILESDIR}/${PN}-071220-fix-qa.patch"
-)
-
-pkg_nofetch() {
-	einfo "Please visit ${HOMEPAGE} and obtain the file"
-	einfo "${SRC_URI}, then place it into your DISTDIR directory."
-}
-
-src_compile() {
-	emake CC="$(tc-getCC)" \
-		CFLAGS="${CFLAGS}" \
-		LDFLAGS="${LDFLAGS}"
-}
-
-src_install() {
-	dobin phred daev
-
-	insinto /usr/share/${PN}
-	doins phredpar.dat
-
-	echo "PHRED_PARAMETER_FILE=${EPREFIX}/usr/share/${PN}/phredpar.dat" > 99phred || die
-	doenvd 99phred
-
-	newdoc DAEV.DOC DAEV.DOC.txt
-	newdoc PHRED.DOC PHRED.DOC.txt
-}
diff --git a/sci-biology/phred/phred-071220-r2.ebuild b/sci-biology/phred/phred-071220-r2.ebuild
new file mode 100644
index 000000000000..9d7ff9a1f6c8
--- /dev/null
+++ b/sci-biology/phred/phred-071220-r2.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit toolchain-funcs
+
+DESCRIPTION="A base caller for Sanger DNA sequencing"
+HOMEPAGE="http://phrap.org/phredphrapconsed.html"
+SRC_URI="phred-dist-071220.b-acd.tar.gz"
+S="${WORKDIR}"
+
+LICENSE="phrap"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+RESTRICT="fetch"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-071220-fix-build-system.patch
+	"${FILESDIR}"/${PN}-071220-fix-qa.patch
+)
+
+pkg_nofetch() {
+	einfo "Please visit ${HOMEPAGE} and obtain the file"
+	einfo "${SRC_URI}, then place it into your DISTDIR directory."
+}
+
+src_compile() {
+	emake CC="$(tc-getCC)" \
+		CFLAGS="${CFLAGS}" \
+		LDFLAGS="${LDFLAGS}"
+}
+
+src_install() {
+	dobin phred daev
+
+	insinto /usr/share/phred
+	doins phredpar.dat
+
+	newenvd - 99phred <<- EOF
+		PHRED_PARAMETER_FILE="${EPREFIX}/usr/share/phred/phredpar.dat"
+	EOF
+
+	newdoc DAEV.DOC DAEV.DOC.txt
+	newdoc PHRED.DOC PHRED.DOC.txt
+}
-- 
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