From 2719f73b6813d11d13a9650cdd2ab8ec6e69385d Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sat, 9 Jul 2022 15:43:36 +0100 Subject: gentoo resync : 09.07.2022 --- sci-biology/mummer/Manifest | 2 +- sci-biology/mummer/mummer-3.23-r1.ebuild | 44 ++++++++++++++++++++++++++++++ sci-biology/mummer/mummer-3.23.ebuild | 46 -------------------------------- 3 files changed, 45 insertions(+), 47 deletions(-) create mode 100644 sci-biology/mummer/mummer-3.23-r1.ebuild delete mode 100644 sci-biology/mummer/mummer-3.23.ebuild (limited to 'sci-biology/mummer') diff --git a/sci-biology/mummer/Manifest b/sci-biology/mummer/Manifest index 52c9f3976850..449d54fecfea 100644 --- a/sci-biology/mummer/Manifest +++ b/sci-biology/mummer/Manifest @@ -2,5 +2,5 @@ AUX mummer-3.23-fix-build-system.patch 10130 BLAKE2B 1c11e08dcc21daf26b14e13dac8 AUX mummer-3.23-fix-c++-qa.patch 2615 BLAKE2B c4af27ae72445836a71ef6417f56b2feaf10483da70d38ff3cbda80d95db0947eb183ef3f34c3922397c759a7e424b1674b193495199c0f5b942af5c9efd77f8 SHA512 ca1a8156ecac367817f4678ed9fd0dd7e5f31cce0d8d167dd9245ea1e2ad4b4acad254277483f99764891a0cbad8ca6f879acc731b8e3e306e5644739c0f82d2 AUX mummer-3.23-fix-shebangs.patch 2357 BLAKE2B 1a244047f55483240bc257892f2a607ab695624152613d665be5abecd85e02484a251e33f411fc67377dad3c49eb5ac32624acefa5cabeaadc8b5e3506dbb21c SHA512 d0ac58170232244385328d3a23e6b8203593d32dda30d75915b4da8ad935fc1dc447b2a7c7d982b0a86c9fe4ca6f8c2031fe7f81af8a72bfba4d56ae6d246235 DIST MUMmer3.23.tar.gz 3160143 BLAKE2B 5be613e0b7bcdbd0c38bb6dd7ff8d5c220ceb596582d89e0c1b62bbb2b289ce3a1842cd7e335a62d612af55388e21b6f780254de06f59e9e49a7eeadd04b6d8e SHA512 f31d36ef3e07fa4ac017c76c1c8d5f53882a59b061742d201f1f7aafb29d16af8268985285398dd90e98d276b2513d2c611f9876069b23fe82b5da1d3ebc04d3 -EBUILD mummer-3.23.ebuild 1133 BLAKE2B 9777159545c4cf807670d87fe2b4e2db2fd1fcfd9ac5139dc7cc3314cdeb17b03d505d4e7b3cf0995f082782d1ad1c488536df5e50d377b1c7dd3733e9af781e SHA512 a25b94cb5e7a8261178d0a503c33812f106dde277c94a8525a0a8fcd6c120ec6b0d5cb80f26f0710245f89251ad4ac6e4fe86af42f31b31f37ab9eca6afc3b79 +EBUILD mummer-3.23-r1.ebuild 1122 BLAKE2B 3cc8490dabdfd892868789447d811b522fe2efca8ae30e73e43ba3be1d1af3affae47e10740c4ff941176ec99a0b37f67405efaa4043c32092ae0ca4c92bb27a SHA512 6f6ebee7bc3cbc8c69643dd25433ef270de2d99bafb11cf06ec325beaf408cdcb0efdd744474689fdad8cf2c288162e85e4f785362f1bc27935584e75e7e3465 MISC metadata.xml 348 BLAKE2B 4f2a263ee7069564001bbbd3d68c710f9bb1dd0f34c2cd9ad2459b483c942bb4cf0785f57c60fa1a27b57a90b5f445fad1422025e424e70b596bb90fe4f64857 SHA512 17850f7126f24e9d1ae26c3034e679881686f775afddf916905da3108bc2d5e3ce0e6b2aa3f63427c62cd76f7cf232c4e9b24077e5341e9f022ebe1c7e6ee1d5 diff --git a/sci-biology/mummer/mummer-3.23-r1.ebuild b/sci-biology/mummer/mummer-3.23-r1.ebuild new file mode 100644 index 000000000000..59a66abe2f04 --- /dev/null +++ b/sci-biology/mummer/mummer-3.23-r1.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit flag-o-matic toolchain-funcs + +DESCRIPTION="A rapid whole genome aligner" +HOMEPAGE="http://mummer.sourceforge.net/" +SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" +S="${WORKDIR}/MUMmer${PV}" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="doc" + +RDEPEND=" + app-shells/tcsh + dev-lang/perl" + +PATCHES=( + "${FILESDIR}"/${PN}-3.23-fix-build-system.patch + "${FILESDIR}"/${PN}-3.23-fix-c++-qa.patch + "${FILESDIR}"/${PN}-3.23-fix-shebangs.patch +) + +src_configure() { + use amd64 && append-cppflags -DSIXTYFOURBITS + tc-export AR CC CXX +} + +src_install() { + dobin src/kurtz/mm3src/mummer + dobin src/tigr/{combineMUMs,delta-filter,gaps,mgaps,postnuc,postpro,prenuc,prepro,repeat-match,show-aligns,show-coords,show-tiling,show-snps,show-diff} + dobin scripts/{exact-tandems,mapview,mummerplot,dnadiff,nucmer,promer,run-mummer1,run-mummer3,nucmer2xfig} + newbin src/tigr/annotate mummer-annotate + + insinto /usr/share/mummer/lib + doins scripts/Foundation.pm + + einstalldocs + use doc && dodoc -r docs/. +} diff --git a/sci-biology/mummer/mummer-3.23.ebuild b/sci-biology/mummer/mummer-3.23.ebuild deleted file mode 100644 index 4839053f4191..000000000000 --- a/sci-biology/mummer/mummer-3.23.ebuild +++ /dev/null @@ -1,46 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit flag-o-matic toolchain-funcs - -DESCRIPTION="A rapid whole genome aligner" -HOMEPAGE="http://mummer.sourceforge.net/" -SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="doc" - -DEPEND="" -RDEPEND=" - app-shells/tcsh - dev-lang/perl" - -S=${WORKDIR}/MUMmer${PV} - -PATCHES=( - "${FILESDIR}"/${PN}-3.23-fix-build-system.patch - "${FILESDIR}"/${PN}-3.23-fix-c++-qa.patch - "${FILESDIR}"/${PN}-3.23-fix-shebangs.patch -) - -src_configure() { - use amd64 && append-cppflags -DSIXTYFOURBITS - tc-export AR CC CXX -} - -src_install() { - dobin src/kurtz/mm3src/mummer - dobin src/tigr/{combineMUMs,delta-filter,gaps,mgaps,postnuc,postpro,prenuc,prepro,repeat-match,show-aligns,show-coords,show-tiling,show-snps,show-diff} - dobin scripts/{exact-tandems,mapview,mummerplot,dnadiff,nucmer,promer,run-mummer1,run-mummer3,nucmer2xfig} - newbin src/tigr/annotate mummer-annotate - - insinto /usr/share/${PN}/lib - doins scripts/Foundation.pm - - einstalldocs - use doc && dodoc -r docs/. -} -- cgit v1.2.3