From c8fd0d84af0bfd1949542adc2cbb735b1d28f9ed Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Fri, 7 May 2021 01:33:16 +0100
Subject: gentoo resync : 07.05.2021

---
 sci-biology/gatk/Manifest        |  3 ---
 sci-biology/gatk/gatk-2.4.ebuild | 32 --------------------------------
 sci-biology/gatk/metadata.xml    | 11 -----------
 3 files changed, 46 deletions(-)
 delete mode 100644 sci-biology/gatk/Manifest
 delete mode 100644 sci-biology/gatk/gatk-2.4.ebuild
 delete mode 100644 sci-biology/gatk/metadata.xml

(limited to 'sci-biology/gatk')

diff --git a/sci-biology/gatk/Manifest b/sci-biology/gatk/Manifest
deleted file mode 100644
index df7ae7e85fe8..000000000000
--- a/sci-biology/gatk/Manifest
+++ /dev/null
@@ -1,3 +0,0 @@
-DIST gatk-2.4.tar.gz 9106774 BLAKE2B a9ac1602091a2f0902c2841942f8dd739562ef6ebbd35894fa445e6a28d748f3c645936914acbdafc8fa59330149ee5ef0738657d8e78d5cf4af5bd26e37ab6b SHA512 9050fc2024d0b3c9a6b5617787831c0496276bcd7318a872f6c1128c31fc31c6f59429a1b189e5c2cc740909b42d846b5e041f8626b03af3a80442294db34ace
-EBUILD gatk-2.4.ebuild 845 BLAKE2B 49efa9285196e9028f6b25976c019d93b48013ab2a049faa8173d6c0204033c1247eb12303bd08bff8393c50b9b6aee49997546c49a37e2970b41aa529961b68 SHA512 2eacd0d6c4351071e42b87a35e5930502d85dff08c7a67dd5403690ab99d402fc9755464ce7055c5ed69752c27d0304cbd1fc3747a80e73d115e034ceccde2a9
-MISC metadata.xml 349 BLAKE2B 277c979d19162d54c5a762e24fcc90d6fc043e5ddd315824b1ccc2376354db4169690933e9d9ebedaf8589636066bf5b32a646ca28892615e8626d7a8d3c43ac SHA512 1605fb041826c7197edcd3658343ed3ac50aea7dfa53262700b9f9e1a45ee81df501e55bf1e8417201f0f2709b6b6e29bb6e5036b7c187846b4dec5e89903f54
diff --git a/sci-biology/gatk/gatk-2.4.ebuild b/sci-biology/gatk/gatk-2.4.ebuild
deleted file mode 100644
index bab228e77f5f..000000000000
--- a/sci-biology/gatk/gatk-2.4.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-EANT_BUILD_TARGET="dist"
-EANT_NEEDS_TOOLS="true"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-
-inherit java-pkg-2 java-ant-2 vcs-snapshot
-
-DESCRIPTION="The Genome Analysis Toolkit"
-HOMEPAGE="http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
-SRC_URI="https://github.com/broadgsa/gatk/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-
-RDEPEND=">=virtual/jre-1.6"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
-	java-pkg-2_src_prepare
-	sed -i '/property name="ivy.home"/ s|${user.home}|'${WORKDIR}'|' build.xml || die
-}
-
-src_install() {
-	java-pkg_dojar dist/*.jar
-	java-pkg_dolauncher GenomeAnalysisTK --jar GenomeAnalysisTK.jar
-	java-pkg_dolauncher AnalyzeCovariates --jar AnalyzeCovariates.jar
-}
diff --git a/sci-biology/gatk/metadata.xml b/sci-biology/gatk/metadata.xml
deleted file mode 100644
index 8c1bb65774cc..000000000000
--- a/sci-biology/gatk/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-biology@gentoo.org</email>
-    <name>Gentoo Biology Project</name>
-  </maintainer>
-  <upstream>
-    <remote-id type="github">broadgsa/gatk</remote-id>
-  </upstream>
-</pkgmetadata>
-- 
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