From d934827bf44b7cfcf6711964418148fa60877668 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Wed, 25 Nov 2020 22:39:15 +0000 Subject: gentoo resync : 25.11.2020 --- sci-biology/embassy-meme/Manifest | 4 - .../embassy-meme/embassy-meme-4.7.660.ebuild | 17 ---- .../embassy-meme-4.7.650_fix-build-system.patch | 100 --------------------- sci-biology/embassy-meme/metadata.xml | 11 --- 4 files changed, 132 deletions(-) delete mode 100644 sci-biology/embassy-meme/Manifest delete mode 100644 sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild delete mode 100644 sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch delete mode 100644 sci-biology/embassy-meme/metadata.xml (limited to 'sci-biology/embassy-meme') diff --git a/sci-biology/embassy-meme/Manifest b/sci-biology/embassy-meme/Manifest deleted file mode 100644 index b52ed7b5f840..000000000000 --- a/sci-biology/embassy-meme/Manifest +++ /dev/null @@ -1,4 +0,0 @@ -AUX embassy-meme-4.7.650_fix-build-system.patch 2860 BLAKE2B 4b6d608d6fde975acd09373b39c64449585cd5f76e323fdd07c9ee9f741cf0f679a143bdd8ef110a0d93b70451425cf021b763860ef376b03c13f8a9456f8e62 SHA512 c44b219c75e67d17fcfd56145ae3709053bda38b8690141d1e9b846e4e4a9cab135f0dc9c5399e4712cf030ad562dd075f45c393e78157a2c1b92d80903b3d1c -DIST embassy-meme-4.7.660.tar.gz 622448 BLAKE2B 93bbbe3de085aa2cd843349f8397b2d1f547be62afdb7deb30eec90a891f7825c847b92754bd956388b1bfe0250cabcbc7ad68f7d0378748a7949001016d344c SHA512 0536531b198aac09a9fe6c17cf1c60c766789c94a7f83f743a90aaa65061c95534bf398c53611a34549b7ec1a4928fdc45fe0d2553f25f85eeda41f90c2e8c6f -EBUILD embassy-meme-4.7.660.ebuild 381 BLAKE2B 05a00fd0ca6d8e16bf61fe932f1e9805bac024fbd5bbee7bb4a37e2b3aaa3e394f5d9b8a9d208c127833c25b3de749abf27d849fe2bf0ab22557d565e3ce923f SHA512 b31045a88106d64ddbdd91cb85d06328b99b57eb490aa9f74f9cbf2464e3ed6485ca5e54ebd8146df8aacf0d44ee8f6f1d68cbb7a9e9dd3f2f46d637e2a8404b -MISC metadata.xml 347 BLAKE2B 2368d452e759747738601ae0e5e5e7181167badeaa28ed89aa8e07b55ebc9d2f1dbcd351cd5569a4548c307cfaa23b26756d88778c078685848db72dd9b094e7 SHA512 d6ddcfb5e3234d23f3c500a7234b0bc77ecdb0cf52f35f041ffdd444b8b3fefe7d0b3e89e5f7fb86da375647b7436ab1766b5bff186206e189045e38ade2056e diff --git a/sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild b/sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild deleted file mode 100644 index 8752e78d8fc9..000000000000 --- a/sci-biology/embassy-meme/embassy-meme-4.7.660.ebuild +++ /dev/null @@ -1,17 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -EBO_DESCRIPTION="MEME - Multiple Em for Motif Elicitation" - -EBO_EAUTORECONF=1 - -inherit emboss-r2 - -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" - -RDEPEND="sci-biology/meme" - -S="${WORKDIR}/MEME-4.7.650" -PATCHES=( "${FILESDIR}"/${PN}-4.7.650_fix-build-system.patch ) diff --git a/sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch b/sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch deleted file mode 100644 index 56f5814e1efa..000000000000 --- a/sci-biology/embassy-meme/files/embassy-meme-4.7.650_fix-build-system.patch +++ /dev/null @@ -1,100 +0,0 @@ - configure.ac | 49 +++++++------------------------------------------ - src/Makefile.am | 6 ++---- - 2 files changed, 9 insertions(+), 46 deletions(-) - -diff --git a/configure.ac b/configure.ac -index 391989f..d921f25 100644 ---- a/configure.ac -+++ b/configure.ac -@@ -635,33 +635,6 @@ AS_CASE([${host_os}], - - - --dnl PCRE library definitions - see the MAJOR and MINOR values --dnl to see which version's configure.in these lines come from -- --dnl Provide the current PCRE version information. Do not use numbers --dnl with leading zeros for the minor version, as they end up in a C --dnl macro, and may be treated as octal constants. Stick to single --dnl digits for minor numbers less than 10. There are unlikely to be --dnl that many releases anyway. -- --PCRE_MAJOR="7" --PCRE_MINOR="9" --PCRE_DATE="11-Apr-2009" --PCRE_VERSION="${PCRE_MAJOR}.${PCRE_MINOR}" -- --dnl Default values for miscellaneous macros -- --POSIX_MALLOC_THRESHOLD="-DPOSIX_MALLOC_THRESHOLD=10" -- --dnl Provide versioning information for libtool shared libraries that --dnl are built by default on Unix systems. -- --PCRE_LIB_VERSION="0:1:0" --PCRE_POSIXLIB_VERSION="0:0:0" -- -- -- -- - dnl FIXME: This does no longer seem required with Autoconf 2.67? - dnl Intel MacOSX 10.6 puts X11 in a non-standard place - dnl AS_IF([test "x${with_x}" != "xno"], -@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL - - - --dnl "Export" these variables for PCRE -- --AC_SUBST([HAVE_MEMMOVE]) --AC_SUBST([HAVE_STRERROR]) --AC_SUBST([PCRE_MAJOR]) --AC_SUBST([PCRE_MINOR]) --AC_SUBST([PCRE_DATE]) --AC_SUBST([PCRE_VERSION]) --AC_SUBST([PCRE_LIB_VERSION]) --AC_SUBST([PCRE_POSIXLIB_VERSION]) --AC_SUBST([POSIX_MALLOC_THRESHOLD]) -- -- -- -- - dnl Test if --enable-localforce given - locallink="no" - embprefix="/usr/local" -@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs], - AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"]) - - -+AS_IF([test "x${enable_systemlibs}" = "xyes"], -+[ -+dnl using system libraries -+ PKG_CHECK_MODULES([PLPLOT], [plplotd], -+ [],[PKG_CHECK_MODULES([PLPLOT], [plplot])] -+ ) -+]) - - - # Enable the purify tool: --enable-purify, sets CC and LIBTOOL -diff --git a/src/Makefile.am b/src/Makefile.am -index 1600399..9f28162 100644 ---- a/src/Makefile.am -+++ b/src/Makefile.am -@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \ - -I../../../ajax/ensembl -I../../../ajax/ajaxdb \ - -I../../../ajax/acd -I../../../plplot - else --AM_CPPFLAGS = -I${embprefix}/include -I${embprefix}/include/eplplot \ -- $(NLINCLUDES) \ -- -I${embprefix}/include/epcre -+AM_CPPFLAGS = -I${embprefix}/include $(NLINCLUDES) $(PLPLOT_CFLAGS) - endif - - if ISSHARED -@@ -60,5 +58,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \ - $(XLIB) - else - LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \ -- -lajax -lepcre $(NLADD) -leplplot $(XLIB) -+ -lajax $(NLADD) $(XLIB) - endif diff --git a/sci-biology/embassy-meme/metadata.xml b/sci-biology/embassy-meme/metadata.xml deleted file mode 100644 index d1b9a7602ec2..000000000000 --- a/sci-biology/embassy-meme/metadata.xml +++ /dev/null @@ -1,11 +0,0 @@ - - - - - sci-biology@gentoo.org - Gentoo Biology Project - - - emboss - - -- cgit v1.2.3