From 5bb9ff1ee56d2b5e75e01a7f066d8b0cec84ec02 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Sat, 20 Mar 2021 14:27:17 +0000
Subject: gentoo resync : 20.03.2021

---
 .../embassy-hmmer-2.3.2.650_fix-build-system.patch | 31 ++++++++++++----------
 1 file changed, 17 insertions(+), 14 deletions(-)

(limited to 'sci-biology/embassy-hmmer/files')

diff --git a/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch b/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch
index 90c45632eada..303aacda46cd 100644
--- a/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch
+++ b/sci-biology/embassy-hmmer/files/embassy-hmmer-2.3.2.650_fix-build-system.patch
@@ -1,12 +1,6 @@
- configure.ac    | 49 +++++++------------------------------------------
- src/Makefile.am |  6 ++----
- 2 files changed, 9 insertions(+), 46 deletions(-)
-
-diff --git a/configure.ac b/configure.ac
-index 037ca00..f539ab6 100644
 --- a/configure.ac
 +++ b/configure.ac
-@@ -635,33 +635,6 @@ AS_CASE([${host_os}],
+@@ -635,33 +635,6 @@
  
  
  
@@ -40,7 +34,7 @@ index 037ca00..f539ab6 100644
  dnl FIXME: This does no longer seem required with Autoconf 2.67?
  dnl Intel MacOSX 10.6 puts X11 in a non-standard place
  dnl AS_IF([test "x${with_x}" != "xno"],
-@@ -737,21 +710,6 @@ AX_LIB_POSTGRESQL
+@@ -737,21 +710,6 @@
  
  
  
@@ -62,7 +56,7 @@ index 037ca00..f539ab6 100644
  dnl Test if --enable-localforce given
  locallink="no"
  embprefix="/usr/local"
-@@ -874,6 +832,13 @@ AC_ARG_ENABLE([systemlibs],
+@@ -874,6 +832,13 @@
  AM_CONDITIONAL([ESYSTEMLIBS], [test "x${enable_systemlibs}" = "xyes"])
  
  
@@ -76,11 +70,9 @@ index 037ca00..f539ab6 100644
  
  
  # Enable the purify tool: --enable-purify, sets CC and LIBTOOL
-diff --git a/src/Makefile.am b/src/Makefile.am
-index dc789bc..5a8c38e 100644
 --- a/src/Makefile.am
 +++ b/src/Makefile.am
-@@ -17,9 +17,7 @@ AM_CPPFLAGS = -I../../../nucleus -I../../../ajax/pcre \
+@@ -17,9 +17,7 @@
  	-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
  	-I../../../ajax/acd -I../../../plplot
  else
@@ -91,10 +83,21 @@ index dc789bc..5a8c38e 100644
  endif
  
  if ISSHARED
-@@ -67,5 +65,5 @@ LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
+@@ -34,7 +32,7 @@
+ -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -lepcre \
+  $(NLAIXLIBS) -leplplot
+ else
+-AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \
++AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -lnucleus -lacd \
+ -lajaxdb -lensembl -lajaxg -lajax -lepcre $(NLAIXLIBS) -leplplot
+ endif
+ endif
+@@ -66,6 +64,6 @@
+ 	../../../plplot/libeplplot.la \
  	$(XLIB)
  else
- LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
+-LDADD = -L${embprefix}/lib -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
 -        -lajax -lepcre $(NLADD) -leplplot $(XLIB)
++LDADD = -lnucleus -lacd -lajaxdb -lensembl -lajaxg \
 +        -lajax $(NLADD) $(XLIB)
  endif
-- 
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