From 4f2d7949f03e1c198bc888f2d05f421d35c57e21 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Mon, 9 Oct 2017 18:53:29 +0100
Subject: reinit the tree, so we can have metadata

---
 sci-biology/cutg/cutg-160-r1.ebuild | 49 +++++++++++++++++++++++++++++++++++++
 1 file changed, 49 insertions(+)
 create mode 100644 sci-biology/cutg/cutg-160-r1.ebuild

(limited to 'sci-biology/cutg/cutg-160-r1.ebuild')

diff --git a/sci-biology/cutg/cutg-160-r1.ebuild b/sci-biology/cutg/cutg-160-r1.ebuild
new file mode 100644
index 000000000000..9a8130969019
--- /dev/null
+++ b/sci-biology/cutg/cutg-160-r1.ebuild
@@ -0,0 +1,49 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=5
+
+DESCRIPTION="Codon usage tables calculated from GenBank"
+HOMEPAGE="http://www.kazusa.or.jp/codon/"
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+DEPEND="emboss? ( sci-biology/emboss )"
+RDEPEND="${DEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		mkdir CODONS || die
+		ebegin "Indexing CUTG for usage with EMBOSS."
+		EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
+			"Indexing CUTG failed."
+		eend
+	fi
+}
+
+src_install() {
+	local file
+	dodoc README CODON_LABEL SPSUM_LABEL
+	if ! use minimal; then
+		dodir /usr/share/${PN}
+		mv *.codon *.spsum "${ED}"/usr/share/${PN} || die \
+			"Installing raw CUTG database failed."
+	fi
+
+	if use emboss; then
+		dodir /usr/share/EMBOSS/data/CODONS
+		cd CODONS || die
+		for file in *; do
+			mv ${file} "${ED}"/usr/share/EMBOSS/data/CODONS/ || die \
+				"Installing the EMBOSS-indexed database failed."
+		done
+	fi
+}
-- 
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