From 2719f73b6813d11d13a9650cdd2ab8ec6e69385d Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@koprulu.sector>
Date: Sat, 9 Jul 2022 15:43:36 +0100
Subject: gentoo resync : 09.07.2022

---
 sci-biology/clustalw/files/1.83-as-needed.patch | 31 ++++++++++++++++++++-----
 1 file changed, 25 insertions(+), 6 deletions(-)

(limited to 'sci-biology/clustalw/files/1.83-as-needed.patch')

diff --git a/sci-biology/clustalw/files/1.83-as-needed.patch b/sci-biology/clustalw/files/1.83-as-needed.patch
index 9bb35b43f24a..54b78b0811e0 100644
--- a/sci-biology/clustalw/files/1.83-as-needed.patch
+++ b/sci-biology/clustalw/files/1.83-as-needed.patch
@@ -1,17 +1,36 @@
 --- a/makefile
 +++ b/makefile
-@@ -11,11 +11,11 @@
+@@ -10,25 +10,22 @@
+ 
  HEADERS = general.h clustalw.h
  
- CC	= cc
+-CC	= cc
 -CFLAGS  = -c -O
 -LFLAGS	= -O -lm 
-+CFLAGS  += -c
-+LIBS	= -lm 
++# C99 for gets()
++CFLAGS	+= -std=gnu99
++LIBS	+= -lm
  
  clustalw : $(OBJECTS) amenu.o clustalw.o
 -	$(CC) -o $@ $(OBJECTS) amenu.o clustalw.o $(LFLAGS)
-+	$(CC) $(LDFLAGS) -o $@ $(OBJECTS) amenu.o clustalw.o $(LIBS)
++	$(CC) $(LDFLAGS) $(CFLAGS) -o $@ $(OBJECTS) amenu.o clustalw.o $(LIBS)
  
  interface.o : interface.c $(HEADERS) param.h
- 	$(CC) $(CFLAGS) $*.c
+-	$(CC) $(CFLAGS) $*.c
++	$(CC) $(CFLAGS) $(CPPFLAGS) -c $<
+ 
+ amenu.o : amenu.c $(HEADERS) param.h
+-	$(CC) $(CFLAGS) $*.c
++	$(CC) $(CFLAGS) $(CPPFLAGS) -c $<
+ 
+ readmat.o : readmat.c $(HEADERS) matrices.h
+-	$(CC) $(CFLAGS) $*.c
++	$(CC) $(CFLAGS) $(CPPFLAGS) -c $<
+ 
+ trees.o : trees.c $(HEADERS) dayhoff.h
+-	$(CC) $(CFLAGS) $*.c
+-
+-.c.o :
+-	$(CC) $(CFLAGS) $?
++	$(CC) $(CFLAGS) $(CPPFLAGS) -c $<
+ 
-- 
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