From 4f2d7949f03e1c198bc888f2d05f421d35c57e21 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Mon, 9 Oct 2017 18:53:29 +0100 Subject: reinit the tree, so we can have metadata --- .../bowtie/files/bowtie-1.1.2-seqan-popcount.patch | 24 ++++++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch (limited to 'sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch') diff --git a/sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch b/sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch new file mode 100644 index 000000000000..52cb4f496521 --- /dev/null +++ b/sci-biology/bowtie/files/bowtie-1.1.2-seqan-popcount.patch @@ -0,0 +1,24 @@ +Description: Use SeqAn 1.4's seqan::popCount() function instead of own function +Author: Ognyan Kulev +Last-Update: 2014-03-08 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- a/diff_sample.h ++++ b/diff_sample.h +@@ -476,6 +476,8 @@ static String getDeltaMap(T v, const + return amap; + } + ++// Debian: Use seqan::popCount ++#if 0 + /** + * Return population count (count of all bits set to 1) of i. + */ +@@ -488,6 +490,7 @@ static unsigned int popCount(T i) { + } + return cnt; + } ++#endif + + /** + * Calculate log-base-2 of i -- cgit v1.2.3