From 4f2d7949f03e1c198bc888f2d05f421d35c57e21 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Mon, 9 Oct 2017 18:53:29 +0100
Subject: reinit the tree, so we can have metadata

---
 sci-biology/biogrep/Manifest              |  6 ++++++
 sci-biology/biogrep/biogrep-1.0-r2.ebuild | 35 +++++++++++++++++++++++++++++++
 sci-biology/biogrep/metadata.xml          |  8 +++++++
 3 files changed, 49 insertions(+)
 create mode 100644 sci-biology/biogrep/Manifest
 create mode 100644 sci-biology/biogrep/biogrep-1.0-r2.ebuild
 create mode 100644 sci-biology/biogrep/metadata.xml

(limited to 'sci-biology/biogrep')

diff --git a/sci-biology/biogrep/Manifest b/sci-biology/biogrep/Manifest
new file mode 100644
index 000000000000..768ae234be61
--- /dev/null
+++ b/sci-biology/biogrep/Manifest
@@ -0,0 +1,6 @@
+DIST biogrep-1.0.pdf 22179 SHA256 87f6a0952a2ebba43fff265d2396851d0be0b578fa94ff11f7dc0427bf784528 SHA512 b0430bded7529a14e3e551e4c7deeffdbdbbe674b5a4bd68afa359b2a4e9f0b8fb4a6474673d298508fa728cf83a328327860e60b3777e92afb15fa87f076411 WHIRLPOOL 02e4c3cc8dfc15f48107731d8515df60e4bde0546eb93cb20bcefb22a1da4a7d7aef05ad7225330e1b276ad7bd34ac7cc1ff2dbbb76a75631c90679cf821c68b
+DIST biogrep-1.0.tar.gz 71867 SHA256 15421d79f6f16d6bf9bef132a97f7f9ede1bd42d3fb90572df04a1e1abd8cfd8 SHA512 da07ea6f5f6fd601a94dc1b9495b204affcdc4d5e7fedfebbb65d6382ef0573e43b4ebd081c24909b2790ec2ae532505604112d4943c3e4e6575e13bdcdf1ae3 WHIRLPOOL 3b73e1d0908a7ceebe72a2660c2b13df168449d246411e1a29b3b910951c9932f86f3a829499bc53c22a6b6881097d846bfa6bd95968f246a669076c798af173
+EBUILD biogrep-1.0-r2.ebuild 866 SHA256 fc2988a8d36935d9cf577200fe42ce313b1fe5302f2e437e1b7a2ad7609aed9d SHA512 224009fb74306670ecff19a0c9d271608aadb20fea285ff9146c8e45c08918629c3ab0176388b6dfadbbd07fb462e1b4d8cc5f1dff93957dfdefde0f4e780fb9 WHIRLPOOL 1483439a2eb5f39610b3b67b93547b985fb3640664d4ae8331af0014f4f280140c326e232a28ce173c8d94a0d710929c9f4b422102e7d5a1d7ab223248b1d74b
+MISC ChangeLog 3407 SHA256 4625c3cab68494c5b28ee284fa17c4d843e40aba147ca08d8b9ecd725459632c SHA512 bcf44fe91b4bb5c85bb43ff4857b2b3a8c9a0f4b4e18e2c0ed64a74395dfb0aedd52622e2e74ee15df43c1be22340c8ce52ee515c2f6c4ed134e6522144e630d WHIRLPOOL 3b7b81d5a0fdc2048e70e6b41fb00cc8a0b7b6cd523908bb48f2838d0279a6716c17dc1fc0c143a133e4132663fd52aba72c75feb53857f9f1809cb3a41afa8b
+MISC ChangeLog-2015 802 SHA256 d1f719df37ef362e1caa8f4526cf9ad5f565a029b078a6ad24952cc6d1bae8a7 SHA512 fdc7dc97457ebe5b559a22497a2863feacbaf45e6eafde8b3843b6a2d6fbe1553748c55c0dd667ba1063991f2abf382ec4f92ce2df4fa73b01ca3eb89bebc79d WHIRLPOOL cc3a356736d1f59695f39aa29d778daab0a6aed7506f4469a66a7fb7e3a5641e7c42b310f6747951a1158ec153eeebe85d475950bf68e48c61b1da5a12b3a137
+MISC metadata.xml 261 SHA256 15c95fe0beb2b86b616b7ac1be6f1118bd598d907b441a94d87721c0d6f36855 SHA512 537da0d3aa2741ebe4442d5dd9b53409decfc9d12ca8e5af8e737c4deb2910c884207e2d441025d19469816100889f04c11038bdffd6a1a15c6217495445090a WHIRLPOOL c00a986f98ceb4fa20ffdb0c411de9841218f8af6f7499a20a34258db4cd74cead97ef2ee18ac8cac7eae7db3c95084cbf8aa3a36f95a1ed7efbb0e088eb50c8
diff --git a/sci-biology/biogrep/biogrep-1.0-r2.ebuild b/sci-biology/biogrep/biogrep-1.0-r2.ebuild
new file mode 100644
index 000000000000..55c780b9ddef
--- /dev/null
+++ b/sci-biology/biogrep/biogrep-1.0-r2.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit autotools
+
+DESCRIPTION="Multithreaded tool for matching large sets of patterns against biosequence DBs"
+HOMEPAGE="http://stephanopoulos.openwetware.org/BIOGREP.html"
+SRC_URI="http://www.openwetware.org/images/3/3d/${P^}.tar.gz -> ${P}.tar.gz
+	doc? ( http://www.openwetware.org/images/4/49/${PN^}.pdf -> ${P}.pdf )"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc examples"
+
+src_prepare() {
+	default
+	mv configure.{in,ac} || die
+	eautoreconf
+}
+
+src_install() {
+	use doc && DOCS+=( "${DISTDIR}"/${P}.pdf )
+	if use examples; then
+		# remove cruft before installing examples
+		find examples/ \( -name 'CVS' -o -name '*~' \) -exec rm -rf '{}' + || die
+
+		DOCS+=( examples )
+		docompress -x /usr/share/doc/${PF}/examples
+	fi
+
+	default
+}
diff --git a/sci-biology/biogrep/metadata.xml b/sci-biology/biogrep/metadata.xml
new file mode 100644
index 000000000000..8417d1580d40
--- /dev/null
+++ b/sci-biology/biogrep/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>Gentoo Biology Project</name>
+	</maintainer>
+</pkgmetadata>
-- 
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