From 4cbcc855382a06088e2f016f62cafdbcb7e40665 Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@koprulu.sector>
Date: Sun, 20 Mar 2022 00:40:44 +0000
Subject: gentoo resync : 20.03.2022

---
 sci-biology/STAR/STAR-2.7.10a.ebuild | 49 ++++++++++++++++++++++++++++++++++++
 1 file changed, 49 insertions(+)
 create mode 100644 sci-biology/STAR/STAR-2.7.10a.ebuild

(limited to 'sci-biology/STAR/STAR-2.7.10a.ebuild')

diff --git a/sci-biology/STAR/STAR-2.7.10a.ebuild b/sci-biology/STAR/STAR-2.7.10a.ebuild
new file mode 100644
index 000000000000..7239efcfe45c
--- /dev/null
+++ b/sci-biology/STAR/STAR-2.7.10a.ebuild
@@ -0,0 +1,49 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+inherit toolchain-funcs
+
+DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays"
+HOMEPAGE="https://github.com/alexdobin/STAR"
+SRC_URI="https://github.com/alexdobin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~amd64"
+
+RDEPEND="sci-libs/htslib:="
+DEPEND="${RDEPEND}"
+BDEPEND="virtual/pkgconfig"
+
+PATCHES=( "${FILESDIR}"/${PN}-2.7.10a-fix-build-system.patch )
+DOCS=( README.md CHANGES.md RELEASEnotes.md doc/STARmanual.pdf )
+
+pkg_pretend() {
+	[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
+}
+
+pkg_setup() {
+	[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
+}
+
+src_prepare() {
+	default
+
+	# remove bundled htslib
+	rm -r source/htslib || die
+}
+
+src_configure() {
+	tc-export CC CXX PKG_CONFIG
+}
+
+src_compile() {
+	emake -C source STAR
+}
+
+src_install() {
+	dobin source/STAR
+	einstalldocs
+}
-- 
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