From a4e2a46beb5e4858ef27bdedbb0ff6d2ced430ad Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sat, 28 Apr 2018 20:02:04 +0100 Subject: gentoo resync : 28.04.2018 --- metadata/md5-cache/sci-biology/ApE-2.0.7-r1 | 2 +- metadata/md5-cache/sci-biology/GBrowse-2.48-r1 | 2 +- metadata/md5-cache/sci-biology/Manifest.gz | Bin 33092 -> 33110 bytes metadata/md5-cache/sci-biology/allpathslg-52488-r2 | 2 +- metadata/md5-cache/sci-biology/amap-2.2-r3 | 2 +- metadata/md5-cache/sci-biology/amos-3.1.0-r4 | 2 +- metadata/md5-cache/sci-biology/augustus-2.5.5 | 2 +- metadata/md5-cache/sci-biology/bamtools-2.5.1 | 2 +- metadata/md5-cache/sci-biology/bamtools-9999 | 2 +- metadata/md5-cache/sci-biology/bedtools-2.26.0 | 2 +- metadata/md5-cache/sci-biology/bfast-0.7.0a | 2 +- metadata/md5-cache/sci-biology/biopandas-0.1.4 | 6 +++--- metadata/md5-cache/sci-biology/biopandas-0.2.1 | 4 ++-- metadata/md5-cache/sci-biology/bioperl-1.6.9 | 2 +- metadata/md5-cache/sci-biology/bioperl-9999-r1 | 2 +- metadata/md5-cache/sci-biology/bioperl-db-1.6.9 | 2 +- metadata/md5-cache/sci-biology/bioperl-db-9999-r1 | 2 +- .../md5-cache/sci-biology/bioperl-network-1.6.9 | 2 +- .../md5-cache/sci-biology/bioperl-network-9999-r1 | 2 +- metadata/md5-cache/sci-biology/bioperl-run-1.6.9 | 2 +- metadata/md5-cache/sci-biology/bioperl-run-9999-r1 | 2 +- metadata/md5-cache/sci-biology/biopython-1.68 | 2 +- metadata/md5-cache/sci-biology/bioruby-1.5.1 | 10 +++++----- metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 | 2 +- metadata/md5-cache/sci-biology/cd-hit-4.6.6 | 2 +- metadata/md5-cache/sci-biology/consed-29 | 2 +- metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 | 2 +- metadata/md5-cache/sci-biology/dialign2-2.2.1 | 2 +- metadata/md5-cache/sci-biology/diya-1.0_rc4 | 2 +- .../sci-biology/embassy-cbstools-1.0.0.660 | 2 +- .../sci-biology/embassy-clustalomega-1.1.0.660 | 2 +- .../sci-biology/embassy-domainatrix-0.1.660 | 2 +- .../md5-cache/sci-biology/embassy-domalign-0.1.660 | 2 +- .../md5-cache/sci-biology/embassy-domsearch-0.1.660 | 2 +- .../md5-cache/sci-biology/embassy-emnu-1.05.660 | 2 +- .../md5-cache/sci-biology/embassy-esim4-1.0.0.660 | 2 +- .../md5-cache/sci-biology/embassy-hmmer-2.3.2.660 | 2 +- .../md5-cache/sci-biology/embassy-iprscan-4.3.1.660 | 2 +- metadata/md5-cache/sci-biology/embassy-meme-4.7.660 | 2 +- .../md5-cache/sci-biology/embassy-mse-3.0.0.660 | 2 +- .../sci-biology/embassy-phylipnew-3.69.660 | 2 +- .../md5-cache/sci-biology/embassy-signature-0.1.660 | 2 +- .../md5-cache/sci-biology/embassy-structure-0.1.660 | 2 +- metadata/md5-cache/sci-biology/embassy-topo-2.0.660 | 2 +- .../md5-cache/sci-biology/embassy-vienna-1.7.2.660 | 2 +- metadata/md5-cache/sci-biology/emboss-6.6.0-r1 | 2 +- metadata/md5-cache/sci-biology/express-0.9.5-r1 | 2 +- metadata/md5-cache/sci-biology/express-1.5.1 | 2 +- metadata/md5-cache/sci-biology/fasta-36.3.5e | 2 +- metadata/md5-cache/sci-biology/fasttree-2.1.7 | 2 +- metadata/md5-cache/sci-biology/fasttree-2.1.8 | 2 +- metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 | 2 +- .../md5-cache/sci-biology/foldingathome-7.4.4-r2 | 13 ------------- .../md5-cache/sci-biology/foldingathome-7.4.4-r3 | 13 +++++++++++++ metadata/md5-cache/sci-biology/gatk-2.4 | 2 +- metadata/md5-cache/sci-biology/gatk-9999 | 2 +- metadata/md5-cache/sci-biology/gibbs-3.1 | 2 +- metadata/md5-cache/sci-biology/glimmer-3.02-r3 | 2 +- metadata/md5-cache/sci-biology/glimmer-3.02b | 2 +- metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 | 2 +- metadata/md5-cache/sci-biology/gmap-2015.12.31.5 | 2 +- metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 | 2 +- metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 | 2 +- metadata/md5-cache/sci-biology/goby-cpp-2.0.1 | 2 +- metadata/md5-cache/sci-biology/kallisto-0.43.1 | 2 +- metadata/md5-cache/sci-biology/kallisto-9999 | 2 +- metadata/md5-cache/sci-biology/last-230 | 2 +- metadata/md5-cache/sci-biology/mafft-7.050 | 2 +- metadata/md5-cache/sci-biology/mafft-7.215 | 2 +- metadata/md5-cache/sci-biology/mafft-7.305 | 2 +- metadata/md5-cache/sci-biology/mcl-08.312 | 2 +- metadata/md5-cache/sci-biology/mcl-12.135 | 2 +- metadata/md5-cache/sci-biology/meme-4.11.2_p2 | 2 +- metadata/md5-cache/sci-biology/mira-4.0.2 | 2 +- metadata/md5-cache/sci-biology/mosaik-2.2.30 | 2 +- metadata/md5-cache/sci-biology/mothur-1.27.0-r1 | 2 +- metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 | 2 +- metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 | 2 +- metadata/md5-cache/sci-biology/mummer-3.23 | 2 +- metadata/md5-cache/sci-biology/muscle-3.8.31 | 2 +- metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 | 2 +- metadata/md5-cache/sci-biology/paml-4.4c-r1 | 2 +- metadata/md5-cache/sci-biology/picard-1.103 | 2 +- metadata/md5-cache/sci-biology/plink-1.07-r1 | 2 +- metadata/md5-cache/sci-biology/plink-1.90_pre140514 | 2 +- metadata/md5-cache/sci-biology/poa-2-r1 | 2 +- metadata/md5-cache/sci-biology/probcons-1.12-r1 | 2 +- metadata/md5-cache/sci-biology/profphd-1.0.39 | 2 +- metadata/md5-cache/sci-biology/profphd-1.0.40 | 2 +- metadata/md5-cache/sci-biology/psipred-3.2.1 | 2 +- metadata/md5-cache/sci-biology/psipred-3.3 | 2 +- metadata/md5-cache/sci-biology/psipred-3.4 | 2 +- metadata/md5-cache/sci-biology/psipred-3.5 | 2 +- metadata/md5-cache/sci-biology/pysam-0.12.0.1 | 4 ++-- metadata/md5-cache/sci-biology/raxml-7.2.6 | 2 +- metadata/md5-cache/sci-biology/rmblast-1.2-r1 | 2 +- metadata/md5-cache/sci-biology/seaview-4.3.5 | 2 +- metadata/md5-cache/sci-biology/seaview-4.5.4 | 2 +- metadata/md5-cache/sci-biology/seaview-4.6 | 2 +- metadata/md5-cache/sci-biology/seqan-1.4.2-r1 | 2 +- metadata/md5-cache/sci-biology/seqan-2.2.0-r1 | 2 +- metadata/md5-cache/sci-biology/seqan-2.4.0 | 2 +- metadata/md5-cache/sci-biology/seqan-9999 | 2 +- metadata/md5-cache/sci-biology/shrimp-2.0.1 | 2 +- metadata/md5-cache/sci-biology/shrimp-2.2.3 | 2 +- metadata/md5-cache/sci-biology/stride-20011129-r1 | 2 +- metadata/md5-cache/sci-biology/tophat-2.1.1-r4 | 2 +- metadata/md5-cache/sci-biology/tree-puzzle-5.2 | 2 +- metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 | 2 +- metadata/md5-cache/sci-biology/uchime-4.2.40 | 2 +- .../md5-cache/sci-biology/ucsc-genome-browser-260 | 2 +- metadata/md5-cache/sci-biology/unafold-3.8-r1 | 2 +- .../md5-cache/sci-biology/update-blastdb-12.0.0 | 2 +- metadata/md5-cache/sci-biology/vcftools-0.1.14 | 2 +- metadata/md5-cache/sci-biology/velvet-1.0.18-r1 | 2 +- metadata/md5-cache/sci-biology/velvet-1.2.10 | 2 +- metadata/md5-cache/sci-biology/vienna-rna-2.1.1 | 2 +- metadata/md5-cache/sci-biology/vienna-rna-2.1.8 | 2 +- metadata/md5-cache/sci-biology/wgs-assembler-7.0-r1 | 2 +- metadata/md5-cache/sci-biology/wise-2.4.0_alpha | 2 +- 120 files changed, 138 insertions(+), 138 deletions(-) delete mode 100644 metadata/md5-cache/sci-biology/foldingathome-7.4.4-r2 create mode 100644 metadata/md5-cache/sci-biology/foldingathome-7.4.4-r3 (limited to 'metadata/md5-cache/sci-biology') diff --git a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 index cbc6b401caff..cd1e4251789e 100644 --- a/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 +++ b/metadata/md5-cache/sci-biology/ApE-2.0.7-r1 @@ -9,5 +9,5 @@ RDEPEND=dev-lang/tcl:0 dev-lang/tk:0 RESTRICT=mirror SLOT=0 SRC_URI=http://www.biology.utah.edu/jorgensen/wayned/ape/Download/Linux/ApE_linux_current.zip -> ApE-2.0.7.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=bf78ab8abbdb34e4f7d5c8a0b4429c0f diff --git a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 index d453bf324d30..21fd7e73d63e 100644 --- a/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 +++ b/metadata/md5-cache/sci-biology/GBrowse-2.48-r1 @@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ ) RDEPEND=!=sci-biology/bioperl-1.6.9 >=dev-perl/Bio-Graphics-2.09 >=dev-perl/GD-2.07 >=dev-perl/CGI-Session-4.02 dev-perl/IO-String dev-perl/JSON dev-perl/libwww-perl dev-perl/Statistics-Descriptive !minimal? ( dev-perl/Bio-Das >=dev-perl/Bio-SamTools-1.20 dev-perl/Crypt-SSLeay dev-perl/DB_File-Lock dev-perl/DBI mysql? ( dev-perl/DBD-mysql ) postgres? ( dev-perl/DBD-Pg ) sqlite? ( dev-perl/DBD-SQLite ) dev-perl/FCGI dev-perl/File-NFSLock dev-perl/GD-SVG dev-perl/Net-OpenID-Consumer dev-perl/Net-SMTP-SSL ) dev-lang/perl:=[-build(-)] >=app-admin/webapp-config-1.50.15 SLOT=0 SRC_URI=mirror://cpan/authors/id/L/LD/LDS/GBrowse-2.48.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp a76ebd3cb5649737496e8238992dd7ca +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf webapp a76ebd3cb5649737496e8238992dd7ca _md5_=bccaeef3292f6df307fc14fb5a2a74b2 diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz index 622baee8a355..2e6e4da5c1fa 100644 Binary files a/metadata/md5-cache/sci-biology/Manifest.gz and b/metadata/md5-cache/sci-biology/Manifest.gz differ diff --git a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 b/metadata/md5-cache/sci-biology/allpathslg-52488-r2 index 5b0b9ca7dce3..d2822d296639 100644 --- a/metadata/md5-cache/sci-biology/allpathslg-52488-r2 +++ b/metadata/md5-cache/sci-biology/allpathslg-52488-r2 @@ -8,5 +8,5 @@ LICENSE=MIT RDEPEND=!sci-biology/allpaths !sci-biology/vaal SLOT=0 SRC_URI=ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-52488.tar.gz https://dev.gentoo.org/~mgorny/dist/allpathslg-52488-patchset.tar.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8c8bda5ab2704db1e969660ebe5882c1 diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r3 b/metadata/md5-cache/sci-biology/amap-2.2-r3 index 3dd59e5817f3..870c1b4c2108 100644 --- a/metadata/md5-cache/sci-biology/amap-2.2-r3 +++ b/metadata/md5-cache/sci-biology/amap-2.2-r3 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=java? ( >=virtual/jre-1.5 ) java? ( >=dev-java/java-config-2.2.0-r3 ) SLOT=0 SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-opt-2 77d2e22d0de7640f817d20e861c0ff3f java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-opt-2 77d2e22d0de7640f817d20e861c0ff3f java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=6bd792e8b76c06ee993b88f83e48b907 diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 b/metadata/md5-cache/sci-biology/amos-3.1.0-r4 index 656855881eea..ef1bc7ca1cc4 100644 --- a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 +++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r4 @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=aec6d1c76d5ea621c66e803800e2b3c4 diff --git a/metadata/md5-cache/sci-biology/augustus-2.5.5 b/metadata/md5-cache/sci-biology/augustus-2.5.5 index 7738b7ccd254..579e4ec0fd25 100644 --- a/metadata/md5-cache/sci-biology/augustus-2.5.5 +++ b/metadata/md5-cache/sci-biology/augustus-2.5.5 @@ -7,5 +7,5 @@ KEYWORDS=amd64 x86 LICENSE=Artistic SLOT=0 SRC_URI=http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=5660f556708e8c3b5d43c9ef832e66ec diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.1 b/metadata/md5-cache/sci-biology/bamtools-2.5.1 index 4ba433f33a35..3c302c0a9c12 100644 --- a/metadata/md5-cache/sci-biology/bamtools-2.5.1 +++ b/metadata/md5-cache/sci-biology/bamtools-2.5.1 @@ -9,5 +9,5 @@ LICENSE=MIT RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/2.5.1 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.1.tar.gz -> bamtools-2.5.1.tar.gz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=2f7d6b2856395f0920d7b682b6bbad56 diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999 index 256829992d3a..5974b4176513 100644 --- a/metadata/md5-cache/sci-biology/bamtools-9999 +++ b/metadata/md5-cache/sci-biology/bamtools-9999 @@ -7,5 +7,5 @@ IUSE=static-libs LICENSE=MIT RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:= SLOT=0/9999 -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 git-r3 25b08efef07cea6bcd45b8c6dcce2782 ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 git-r3 25b08efef07cea6bcd45b8c6dcce2782 ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=2f7d6b2856395f0920d7b682b6bbad56 diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0 index a78abf045913..54c0ae1bdb7f 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.26.0 +++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz https://dev.gentoo.org/~mgorny/dist/bedtools-2.26.0-fix-buildsystem.patch.bz2 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=e072d90aa6492a70f261161c8d5551e5 diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a index a0a1d39cf9b1..811f608fc5be 100644 --- a/metadata/md5-cache/sci-biology/bfast-0.7.0a +++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-perl/XML-Simple SLOT=0 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=abc362f15c5107d96bedfb879ea0375f diff --git a/metadata/md5-cache/sci-biology/biopandas-0.1.4 b/metadata/md5-cache/sci-biology/biopandas-0.1.4 index 8d18c69d7eb3..b90e9715a84c 100644 --- a/metadata/md5-cache/sci-biology/biopandas-0.1.4 +++ b/metadata/md5-cache/sci-biology/biopandas-0.1.4 @@ -2,7 +2,7 @@ DEFINED_PHASES=compile configure install prepare test DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] test? ( dev-python/nose[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] DESCRIPTION=Molecular Structures in Pandas DataFrames EAPI=5 -HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/rasbt/biopandas https://pypi.org/project/BioPandas +HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/rasbt/biopandas https://pypi.org/project/BioPandas/ IUSE=test python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=BSD @@ -10,5 +10,5 @@ RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(- REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 ) SLOT=0 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.1.4.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 distutils-r1 c25bafd988acc946bfa457eac09621d8 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 e9350ec46bb5c9f3504b4fbe8b8d8987 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils f2c8335407f0b935b0a96d4adf23ef25 -_md5_=f51985697af4636eab3fbeb846a5290f +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 distutils-r1 c25bafd988acc946bfa457eac09621d8 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 e9350ec46bb5c9f3504b4fbe8b8d8987 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_md5_=0cd8b2ce25811b0d0249bc4c771daa24 diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.1 b/metadata/md5-cache/sci-biology/biopandas-0.2.1 index d9211b0c8edc..aad67aff9d1a 100644 --- a/metadata/md5-cache/sci-biology/biopandas-0.2.1 +++ b/metadata/md5-cache/sci-biology/biopandas-0.2.1 @@ -2,7 +2,7 @@ DEFINED_PHASES=compile configure install prepare test DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] test? ( dev-python/nose[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] DESCRIPTION=Molecular Structures in Pandas DataFrames EAPI=6 -HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/rasbt/biopandas https://pypi.org/project/BioPandas +HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/rasbt/biopandas https://pypi.org/project/BioPandas/ IUSE=test python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=BSD @@ -11,4 +11,4 @@ REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targe SLOT=0 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.1.tar.gz _eclasses_=distutils-r1 c25bafd988acc946bfa457eac09621d8 multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 e9350ec46bb5c9f3504b4fbe8b8d8987 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 -_md5_=98b9c9b3788d40edc54f3990cddd56ec +_md5_=ea88f22f7675491064ad08658a2ba291 diff --git a/metadata/md5-cache/sci-biology/bioperl-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-1.6.9 index d594d8fcac6c..87586d9f49d3 100644 --- a/metadata/md5-cache/sci-biology/bioperl-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-1.6.9 @@ -11,5 +11,5 @@ RDEPEND=dev-perl/libwww-perl !minimal? ( dev-perl/Algorithm-Munkres dev-perl/Arr REQUIRED_USE=minimal? ( !graphviz ) SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=be22a76392a6e5c121e4b6d388045faa diff --git a/metadata/md5-cache/sci-biology/bioperl-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-9999-r1 index 773cef4b43ff..4209e82fd701 100644 --- a/metadata/md5-cache/sci-biology/bioperl-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-9999-r1 @@ -8,5 +8,5 @@ LICENSE=Artistic GPL-2 PDEPEND=!minimal? ( dev-perl/Bio-ASN1-EntrezGene ) db? ( >=sci-biology/bioperl-db-9999 ) network? ( >=sci-biology/bioperl-network-9999 ) run? ( >=sci-biology/bioperl-run-9999 ) RDEPEND=dev-perl/Data-Stag dev-perl/libwww-perl !minimal? ( dev-perl/Ace dev-perl/Bio-ASN1-EntrezGene dev-perl/Spreadsheet-ParseExcel dev-perl/Spreadsheet-WriteExcel >=dev-perl/XML-SAX-0.15 dev-perl/Graph dev-perl/SOAP-Lite dev-perl/Array-Compare dev-perl/SVG dev-perl/XML-Simple dev-perl/XML-Parser dev-perl/XML-Twig >=dev-perl/HTML-Parser-3.60 >=dev-perl/XML-Writer-0.4 dev-perl/Clone dev-perl/XML-DOM dev-perl/Set-Scalar dev-perl/XML-XPath dev-perl/XML-DOM-XPath dev-perl/Algorithm-Munkres dev-perl/Data-Stag dev-perl/Math-Random dev-perl/PostScript dev-perl/Convert-Binary-C dev-perl/SVG-Graph ) graphviz? ( dev-perl/GraphViz ) dev-lang/perl:=[-build(-)] SLOT=0 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=210415961127105f0fc625670ba9e423 diff --git a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 index ebd46eff0e91..1ba9e9b9dda9 100644 --- a/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-db-1.6.9 @@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 dev-perl/DBD-mysql dev-perl/DBI sci-biology/ RESTRICT=test SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-DB-1.006900.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=2470d7ecf1b6ff1902a8d74057748480 diff --git a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 index d79a3f6995ee..ff8c3cd9058b 100644 --- a/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-db-9999-r1 @@ -6,5 +6,5 @@ HOMEPAGE=http://www.bioperl.org/ LICENSE=Artistic GPL-2 RDEPEND=>=sci-biology/bioperl-9999 dev-perl/DBI sci-biology/biosql dev-lang/perl:=[-build(-)] SLOT=0 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=fd4229be06b3975302e9e37ca35601d2 diff --git a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 index f5028156525e..6312749fff68 100644 --- a/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-network-1.6.9 @@ -9,5 +9,5 @@ LICENSE=|| ( Artistic GPL-1+ ) RDEPEND=>=sci-biology/bioperl-1.6.9 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)] SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Network-1.006900.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=cb366a6a0c6cf3c12320c2d6d3551abe diff --git a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 index 8029cc60a2d2..a884579e5ad3 100644 --- a/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-network-9999-r1 @@ -7,5 +7,5 @@ IUSE=test LICENSE=Artistic GPL-2 RDEPEND=>=sci-biology/bioperl-9999 >=dev-perl/Graph-0.86 dev-lang/perl:=[-build(-)] SLOT=0 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=025cd5fa89be402f3296160dbf755c8b diff --git a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 index e1c552d3d179..59d16152f650 100644 --- a/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 +++ b/metadata/md5-cache/sci-biology/bioperl-run-1.6.9 @@ -10,5 +10,5 @@ RDEPEND=>=sci-biology/bioperl-1.6.9 !minimal? ( dev-perl/Algorithm-Diff dev-perl RESTRICT=test SLOT=0 SRC_URI=mirror://cpan/authors/id/C/CJ/CJFIELDS/BioPerl-Run-1.006900.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=9caec4e5b47cbf306a1689903f2a018a diff --git a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 index 117777691242..b1c04373de54 100644 --- a/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 +++ b/metadata/md5-cache/sci-biology/bioperl-run-9999-r1 @@ -8,5 +8,5 @@ LICENSE=Artistic GPL-2 RDEPEND=>=sci-biology/bioperl-9999 !minimal? ( dev-perl/Algorithm-Diff dev-perl/XML-Twig dev-perl/IO-String dev-perl/IPC-Run ) dev-lang/perl:=[-build(-)] RESTRICT=test SLOT=0 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=26abe4f8477c1a1c22bd8515484ce1c1 diff --git a/metadata/md5-cache/sci-biology/biopython-1.68 b/metadata/md5-cache/sci-biology/biopython-1.68 index ed6e0d52faa2..0864d42d841f 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.68 +++ b/metadata/md5-cache/sci-biology/biopython-1.68 @@ -10,5 +10,5 @@ RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 ) SLOT=0 SRC_URI=http://www.biopython.org/DIST/biopython-1.68.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 distutils-r1 c25bafd988acc946bfa457eac09621d8 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 e9350ec46bb5c9f3504b4fbe8b8d8987 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 distutils-r1 c25bafd988acc946bfa457eac09621d8 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 e9350ec46bb5c9f3504b4fbe8b8d8987 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=d27e2e9df832a55985e7f459f9e4fa81 diff --git a/metadata/md5-cache/sci-biology/bioruby-1.5.1 b/metadata/md5-cache/sci-biology/bioruby-1.5.1 index 4fbb5e0fc91a..943a70d107cd 100644 --- a/metadata/md5-cache/sci-biology/bioruby-1.5.1 +++ b/metadata/md5-cache/sci-biology/bioruby-1.5.1 @@ -1,14 +1,14 @@ DEFINED_PHASES=compile configure install prepare setup test unpack -DEPEND=test? ( ruby_targets_ruby22? ( dev-ruby/libxml[ruby_targets_ruby22] ) ruby_targets_ruby23? ( dev-ruby/libxml[ruby_targets_ruby23] ) ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby22? ( doc? ( dev-ruby/rake[ruby_targets_ruby22] ) ) ruby_targets_ruby23? ( doc? ( dev-ruby/rake[ruby_targets_ruby23] ) ) ruby_targets_ruby22? ( test? ( dev-ruby/rake[ruby_targets_ruby22] ) ) ruby_targets_ruby23? ( test? ( dev-ruby/rake[ruby_targets_ruby23] ) ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) test? ( ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) ) +DEPEND=test? ( ruby_targets_ruby23? ( dev-ruby/libxml[ruby_targets_ruby23] ) ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby23? ( doc? ( dev-ruby/rake[ruby_targets_ruby23] ) ) ruby_targets_ruby23? ( test? ( dev-ruby/rake[ruby_targets_ruby23] ) ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) test? ( ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) ) DESCRIPTION=An integrated environment for bioinformatics using the Ruby language EAPI=6 HOMEPAGE=http://bioruby.org/ -IUSE=test elibc_FreeBSD ruby_targets_ruby22 ruby_targets_ruby23 doc test test +IUSE=test elibc_FreeBSD ruby_targets_ruby23 doc test test KEYWORDS=amd64 ~ppc x86 LICENSE=Ruby -RDEPEND=ruby_targets_ruby22? ( dev-ruby/libxml[ruby_targets_ruby22] ) ruby_targets_ruby23? ( dev-ruby/libxml[ruby_targets_ruby23] ) ruby_targets_ruby22? ( dev-lang/ruby:2.2 ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby22? ( virtual/rubygems[ruby_targets_ruby22] ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) -REQUIRED_USE=|| ( ruby_targets_ruby22 ruby_targets_ruby23 ) +RDEPEND=ruby_targets_ruby23? ( dev-ruby/libxml[ruby_targets_ruby23] ) ruby_targets_ruby23? ( dev-lang/ruby:2.3 ) ruby_targets_ruby23? ( virtual/rubygems[ruby_targets_ruby23] ) +REQUIRED_USE=|| ( ruby_targets_ruby23 ) SLOT=0 SRC_URI=mirror://rubygems/bio-1.5.1.gem -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 ruby-fakegem cf1343b57e8029745950b4b147ff4d3a ruby-ng 2da44d50080e3d54e1a4ac7d91d149f8 ruby-utils e5942a80e3c3b936c6b84d6dc4af9f9c toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 ruby-fakegem cf1343b57e8029745950b4b147ff4d3a ruby-ng c1f44e746d7656dd6e02d8815ff9518a ruby-utils e5942a80e3c3b936c6b84d6dc4af9f9c toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=86363a7bfb4b82d4d29cabbf3c45a28d diff --git a/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 b/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 index 773b1d1e047f..83e139f7a38c 100644 --- a/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 +++ b/metadata/md5-cache/sci-biology/bowtie-1.1.2-r1 @@ -9,5 +9,5 @@ LICENSE=Artistic RDEPEND=tbb? ( dev-cpp/tbb ) SLOT=1 SRC_URI=mirror://sourceforge/bowtie-bio/bowtie-1.1.2-src.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=069dc133bc01cabadeda1e327034b7a7 diff --git a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 b/metadata/md5-cache/sci-biology/cd-hit-4.6.6 index f49963f0e5ff..580c5539f184 100644 --- a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 +++ b/metadata/md5-cache/sci-biology/cd-hit-4.6.6 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl SLOT=0 SRC_URI=https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz -> cd-hit-4.6.6.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=bbe0ae10275a73485487e08f19f4ac1b diff --git a/metadata/md5-cache/sci-biology/consed-29 b/metadata/md5-cache/sci-biology/consed-29 index c79395fadd3e..bb6526a98b0d 100644 --- a/metadata/md5-cache/sci-biology/consed-29 +++ b/metadata/md5-cache/sci-biology/consed-29 @@ -10,5 +10,5 @@ RDEPEND=x11-libs/libX11 x11-libs/motif:0 sci-biology/samtools:0.1-legacy dev-lan RESTRICT=fetch SLOT=0 SRC_URI=consed-29-sources.tar.gz consed-29-linux.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=d533d3bc63ad3989cce879478db9de97 diff --git a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 index f67daa37d3d2..2416e47dfc83 100644 --- a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 +++ b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 @@ -10,5 +10,5 @@ RDEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=816b8cb2b88b4938d0bf5ea1db34170b diff --git a/metadata/md5-cache/sci-biology/dialign2-2.2.1 b/metadata/md5-cache/sci-biology/dialign2-2.2.1 index bcb0d4b29c98..422031fcb346 100644 --- a/metadata/md5-cache/sci-biology/dialign2-2.2.1 +++ b/metadata/md5-cache/sci-biology/dialign2-2.2.1 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=LGPL-2.1 SLOT=0 SRC_URI=http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=3761a69a47f38308f54ae0b051361ed6 diff --git a/metadata/md5-cache/sci-biology/diya-1.0_rc4 b/metadata/md5-cache/sci-biology/diya-1.0_rc4 index f0e8d08cfd14..6512fa13c9db 100644 --- a/metadata/md5-cache/sci-biology/diya-1.0_rc4 +++ b/metadata/md5-cache/sci-biology/diya-1.0_rc4 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=sci-biology/bioperl dev-perl/Data-Utilities dev-perl/XML-Simple !minimal? ( sci-biology/mummer sci-biology/glimmer sci-biology/trnascan-se sci-biology/infernal ) dev-lang/perl:=[-build(-)] SLOT=0 SRC_URI=mirror://sourceforge/diyg/files/diya/diya-1.0/diya-1.0-rc4.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions 01e8c68d5a528bbcda4d3c60205983df perl-module 863b35d127db98823d439f8d73c2d011 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 unpacker f40f7b4bd5aa88c2a4ba7b0d1e0ded70 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=5d4639d7c08c43e2c2208492508fd56c diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 index 9d43f98e5c00..6893d2dd7285 100644 --- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4166ba28131fdf70907b31300aa4c08b diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 index 35d4f1f57481..48de8711d933 100644 --- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=ef491b452e56be12961f62b16961f4f1 diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 index cd9a630943d7..cdfdc0e394cb 100644 --- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=bfee4f5b2b2adadb41de2eb02d4dcbc0 diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 index 70874eaf2336..341ba6fa09aa 100644 --- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=9f8b2caa273f4ae3b0463e6de6782660 diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 index 100d06f3d7ba..feb6b0ecf7de 100644 --- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=920906439fbc5278460201b23a615736 diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 index 0e9ee4cfcf4d..6968f13d6d8e 100644 --- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 +++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=d82c7c44ec76fa5d6165769a73e5df9a diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 index ae3b1363cd97..05b6e0ebf971 100644 --- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=1b156bed7ea031aeb5464836dd987f18 diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 index 8babe3f051c7..6482af08ff73 100644 --- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=83d02ae22d4e1864669639d9289cd112 diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 index f3b5e07f6e2e..91382f3e6ca2 100644 --- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=73b0c29964ea3506d18ef6b6c8df70e1 diff --git a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 index 8fc625195870..8bd4cbdb7beb 100644 --- a/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 +++ b/metadata/md5-cache/sci-biology/embassy-meme-4.7.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=sci-biology/meme dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MEME-4.7.660.tar.gz -> embassy-meme-4.7.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=b18db6d7a2159272c7b69d34a14dc9b5 diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 index 546596d7d79a..60dc824f295f 100644 --- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=ncurses? ( sys-libs/ncurses:0= ) dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=84df94b7c4b0f044de45cef524cbf453 diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 index 45063c986b6e..bba33a18cfa5 100644 --- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 +++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 freedist RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=00620d36fbf4790dc2ecfb240ba9816c diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 index e18dffabc238..8b6b822e46b6 100644 --- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4cb685046b5a39b624eb3467b815c2c4 diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 index afcd87c48d18..28c1ba9e9667 100644 --- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 +++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=634d624be78f958ed7fca02e7dc43bd4 diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 index 1448b2a974a5..c46689ec1f05 100644 --- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 +++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=e50220ee11093554b589c1f9f53e7c09 diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 index 211a70e9184e..664ec905227a 100644 --- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 +++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 @@ -9,5 +9,5 @@ LICENSE=LGPL-2 GPL-2 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,static-libs=,X=] SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=d257de40bcdb33c0735daac8a5f15fda diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 index 78cca5e09c90..6f716806781b 100644 --- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 +++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 @@ -10,5 +10,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( virtual/mysql ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) SLOT=0 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 readme.gentoo-r1 6f03e110529650f57fc7d1fb908b8986 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 emboss-r2 e6c8236c06e1e543b4feef45c31dd618 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 readme.gentoo-r1 6f03e110529650f57fc7d1fb908b8986 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=99a47266a2a8f2fd0a874111491146e2 diff --git a/metadata/md5-cache/sci-biology/express-0.9.5-r1 b/metadata/md5-cache/sci-biology/express-0.9.5-r1 index 51bb34f2e127..d0917a4b8527 100644 --- a/metadata/md5-cache/sci-biology/express-0.9.5-r1 +++ b/metadata/md5-cache/sci-biology/express-0.9.5-r1 @@ -8,5 +8,5 @@ LICENSE=Artistic RDEPEND=>=dev-libs/boost-1.52.0:= sys-libs/zlib sci-biology/bamtools SLOT=0 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-0.9.5/express-0.9.5-src.tgz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=6d15a446bfc7659cceaabe3567001583 diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1 index 2c4f58df02a5..b08b0731e036 100644 --- a/metadata/md5-cache/sci-biology/express-1.5.1 +++ b/metadata/md5-cache/sci-biology/express-1.5.1 @@ -8,5 +8,5 @@ LICENSE=Artistic RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sys-libs/zlib sci-biology/bamtools SLOT=0 SRC_URI=http://bio.math.berkeley.edu/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=a2d4ea80b964801c45f62ae737430d6d diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.5e b/metadata/md5-cache/sci-biology/fasta-36.3.5e index f9d4aff96fc4..04cfb987310b 100644 --- a/metadata/md5-cache/sci-biology/fasta-36.3.5e +++ b/metadata/md5-cache/sci-biology/fasta-36.3.5e @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos LICENSE=fasta SLOT=0 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.5e.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=7b46f81d2659e9120c49874e774b5ca0 diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.7 b/metadata/md5-cache/sci-biology/fasttree-2.1.7 index 4fd4cd1da489..c0324cf7821e 100644 --- a/metadata/md5-cache/sci-biology/fasttree-2.1.7 +++ b/metadata/md5-cache/sci-biology/fasttree-2.1.7 @@ -9,5 +9,5 @@ LICENSE=GPL-2 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 ) SLOT=0 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.7.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.7.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.7.tar.gz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=20d72299931c8f8e092006a9b668182c diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.8 b/metadata/md5-cache/sci-biology/fasttree-2.1.8 index 450324f02d19..256a8b22e442 100644 --- a/metadata/md5-cache/sci-biology/fasttree-2.1.8 +++ b/metadata/md5-cache/sci-biology/fasttree-2.1.8 @@ -9,5 +9,5 @@ LICENSE=GPL-2 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 ) SLOT=0 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.8.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.8.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.8.tar.gz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=f2b648d93a4c0ca58285574958cde15a diff --git a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 index 6947d59a2257..e6f92cbc68cd 100644 --- a/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 +++ b/metadata/md5-cache/sci-biology/finchtv-1.3.1-r3 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=finchtv SLOT=0 SRC_URI=http://www.geospiza.com/finchtv/download/programs/linux/finchtv_1_3_1.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=08355830f28d1052c2ab527b82a8dd68 diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r2 b/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r2 deleted file mode 100644 index 4cab6abcd62b..000000000000 --- a/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r2 +++ /dev/null @@ -1,13 +0,0 @@ -DEFINED_PHASES=config install postinst postrm setup -DEPEND=virtual/pkgconfig -DESCRIPTION=Folding@Home is a distributed computing project for protein folding -EAPI=6 -HOMEPAGE=http://folding.stanford.edu/FAQ-SMP.html -KEYWORDS=~amd64 ~x86 -LICENSE=FAH-EULA-2014 FAH-special-permission -RDEPEND=app-arch/bzip2 sys-devel/gcc sys-libs/glibc sys-libs/zlib -RESTRICT=mirror bindist strip -SLOT=0 -SRC_URI=x86? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.5-32bit/v7.4/fahclient_7.4.4-32bit-release.tar.bz2 ) amd64? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.3-64bit/v7.4/fahclient_7.4.4-64bit-release.tar.bz2 ) -_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib 97f470f374f2e94ccab04a2fb21d811e systemd a31844b675f1a1fea87fbe1144aee5f5 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 user 8bc2845510e2109af75e3eeac607ec81 versionator ce21313503c41896ebcd7d58b0607e37 -_md5_=86f961609a642ab48b8d01340679c697 diff --git a/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r3 b/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r3 new file mode 100644 index 000000000000..78786ad3a20f --- /dev/null +++ b/metadata/md5-cache/sci-biology/foldingathome-7.4.4-r3 @@ -0,0 +1,13 @@ +DEFINED_PHASES=config install postinst postrm setup +DEPEND=virtual/pkgconfig +DESCRIPTION=Folding@Home is a distributed computing project for protein folding +EAPI=6 +HOMEPAGE=http://folding.stanford.edu/FAQ-SMP.html +KEYWORDS=~amd64 ~x86 +LICENSE=FAH-EULA-2014 FAH-special-permission +RDEPEND=app-arch/bzip2 sys-devel/gcc sys-libs/glibc sys-libs/zlib +RESTRICT=mirror bindist strip +SLOT=0 +SRC_URI=x86? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.5-32bit/v7.4/fahclient_7.4.4-32bit-release.tar.bz2 ) amd64? ( https://fah.stanford.edu/file-releases/public/release/fahclient/centos-5.3-64bit/v7.4/fahclient_7.4.4-64bit-release.tar.bz2 ) +_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib 97f470f374f2e94ccab04a2fb21d811e systemd a31844b675f1a1fea87fbe1144aee5f5 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 user 8bc2845510e2109af75e3eeac607ec81 versionator 26ca8a8bd95d6a74122c08ba98a4ee72 +_md5_=88985dd852d9319fa9869bece9f35a26 diff --git a/metadata/md5-cache/sci-biology/gatk-2.4 b/metadata/md5-cache/sci-biology/gatk-2.4 index c7c442630b45..cda92a684a4d 100644 --- a/metadata/md5-cache/sci-biology/gatk-2.4 +++ b/metadata/md5-cache/sci-biology/gatk-2.4 @@ -9,5 +9,5 @@ LICENSE=MIT RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=https://github.com/broadgsa/gatk/archive/2.4.tar.gz -> gatk-2.4.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot 3be1ab44131e8c0bbdaa75823008444b versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot 3be1ab44131e8c0bbdaa75823008444b versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=8afea474ed6c1f4ad5ac6d6a18c49542 diff --git a/metadata/md5-cache/sci-biology/gatk-9999 b/metadata/md5-cache/sci-biology/gatk-9999 index bee7cf693402..0c29de25fbc7 100644 --- a/metadata/md5-cache/sci-biology/gatk-9999 +++ b/metadata/md5-cache/sci-biology/gatk-9999 @@ -7,5 +7,5 @@ IUSE=elibc_FreeBSD elibc_FreeBSD LICENSE=MIT RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 45ff482316b52b3f96ff6b7309b77f03 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=df4fa840e567320d0f100f0073200f23 diff --git a/metadata/md5-cache/sci-biology/gibbs-3.1 b/metadata/md5-cache/sci-biology/gibbs-3.1 index a80447ae4878..6432fc83c577 100644 --- a/metadata/md5-cache/sci-biology/gibbs-3.1 +++ b/metadata/md5-cache/sci-biology/gibbs-3.1 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=mpi? ( virtual/mpi sys-cluster/mpe2 ) SLOT=0 SRC_URI=mirror://gentoo/gibbs-3.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=e28918ff8ca46c8b8254e4e36f8d0bcf diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 b/metadata/md5-cache/sci-biology/glimmer-3.02-r3 index 63f296712c7e..05798b276faf 100644 --- a/metadata/md5-cache/sci-biology/glimmer-3.02-r3 +++ b/metadata/md5-cache/sci-biology/glimmer-3.02-r3 @@ -7,5 +7,5 @@ LICENSE=Artistic RDEPEND=app-shells/tcsh SLOT=0 SRC_URI=http://www.cbcb.umd.edu/software/glimmer/glimmer302.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=fda3f095f34da47d12e170b3c40dfd67 diff --git a/metadata/md5-cache/sci-biology/glimmer-3.02b b/metadata/md5-cache/sci-biology/glimmer-3.02b index 209c8bad56b8..bd310ec41806 100644 --- a/metadata/md5-cache/sci-biology/glimmer-3.02b +++ b/metadata/md5-cache/sci-biology/glimmer-3.02b @@ -7,5 +7,5 @@ LICENSE=Artistic RDEPEND=app-shells/tcsh sci-biology/elph SLOT=0 SRC_URI=http://ccb.jhu.edu/software/glimmer/glimmer302b.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=1a77df881e0fba38094c344e97b529a5 diff --git a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 index 02d7bd9bb8cd..b2cb07740449 100644 --- a/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 +++ b/metadata/md5-cache/sci-biology/glimmerhmm-3.0.1-r1 @@ -6,5 +6,5 @@ KEYWORDS=amd64 x86 LICENSE=Artistic SLOT=0 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/GlimmerHMM-3.0.1.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=addae30e588a0c7a05baea53d553af0f diff --git a/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 b/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 index 5309b43117f4..735b548494bd 100644 --- a/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 +++ b/metadata/md5-cache/sci-biology/gmap-2015.12.31.5 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=gmap SLOT=0 SRC_URI=http://research-pub.gene.com/gmap/src/gmap-gsnap-2015-12-31.v5.tar.gz -_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=398e7f0670f5bd07e45f2780d7fe03cf diff --git a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 index 3e0a45a09df3..b96d3def7666 100644 --- a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 +++ b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 LGPL-3 RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev-java/commons-io:1 dev-java/protobuf-java:0 dev-java/fastutil:0 dev-java/log4j dev-java/jsap dev-java/commons-configuration dev-java/commons-math:2 cpp? ( ~sci-biology/goby-cpp-1.9.7.3 ) >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-deps.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=d8bbf59f45f0b32b55de88f3c5233883 diff --git a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 index 42118bf4e1ae..dd0ec4d489de 100644 --- a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 +++ b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 LGPL-3 RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev-java/commons-io:1 dev-java/protobuf-java:0 dev-java/fastutil:0 dev-java/log4j dev-java/jsap dev-java/commons-configuration dev-java/commons-math:2 cpp? ( ~sci-biology/goby-cpp-1.9.8.1 ) >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-deps.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=d8bbf59f45f0b32b55de88f3c5233883 diff --git a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 index baaadab9fcec..bc46f94e0749 100644 --- a/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 +++ b/metadata/md5-cache/sci-biology/goby-cpp-2.0.1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=>=dev-libs/protobuf-2.4.1 >=dev-libs/libpcre-8.12 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_2.0.1/goby_2.0.1-cpp.zip https://dev.gentoo.org/~mgorny/dist/goby-cpp-2.0.1-files.tar.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8282c100b202c470aedc98e37f6151ff diff --git a/metadata/md5-cache/sci-biology/kallisto-0.43.1 b/metadata/md5-cache/sci-biology/kallisto-0.43.1 index bdad7dec4794..de2872ac57eb 100644 --- a/metadata/md5-cache/sci-biology/kallisto-0.43.1 +++ b/metadata/md5-cache/sci-biology/kallisto-0.43.1 @@ -8,5 +8,5 @@ LICENSE=BSD RDEPEND=sci-libs/hdf5:= sys-libs/zlib:= SLOT=0 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.43.1.tar.gz -> kallisto-0.43.1.tar.gz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=b5fc562bf49e70db44b86bc5702ae9f2 diff --git a/metadata/md5-cache/sci-biology/kallisto-9999 b/metadata/md5-cache/sci-biology/kallisto-9999 index 9adeb28980a4..5dba4f3dd38c 100644 --- a/metadata/md5-cache/sci-biology/kallisto-9999 +++ b/metadata/md5-cache/sci-biology/kallisto-9999 @@ -6,5 +6,5 @@ HOMEPAGE=http://pachterlab.github.io/kallisto/ LICENSE=BSD RDEPEND=sci-libs/hdf5:= sys-libs/zlib:= SLOT=0 -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 git-r3 25b08efef07cea6bcd45b8c6dcce2782 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 git-r3 25b08efef07cea6bcd45b8c6dcce2782 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=b5fc562bf49e70db44b86bc5702ae9f2 diff --git a/metadata/md5-cache/sci-biology/last-230 b/metadata/md5-cache/sci-biology/last-230 index d9585d9899bf..df300c82416d 100644 --- a/metadata/md5-cache/sci-biology/last-230 +++ b/metadata/md5-cache/sci-biology/last-230 @@ -7,5 +7,5 @@ KEYWORDS=amd64 x86 LICENSE=GPL-3 SLOT=0 SRC_URI=http://last.cbrc.jp/archive/last-230.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=5da658e6779591b0d1b9ad3413a0e7b2 diff --git a/metadata/md5-cache/sci-biology/mafft-7.050 b/metadata/md5-cache/sci-biology/mafft-7.050 index 9d63b03df53c..fe45e160e9f6 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.050 +++ b/metadata/md5-cache/sci-biology/mafft-7.050 @@ -7,5 +7,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos LICENSE=BSD SLOT=0 SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.050-without-extensions-src.tgz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=10435da51da43a9bd92e9e337fb92445 diff --git a/metadata/md5-cache/sci-biology/mafft-7.215 b/metadata/md5-cache/sci-biology/mafft-7.215 index e9d3a404385d..67ab9e5cb03a 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.215 +++ b/metadata/md5-cache/sci-biology/mafft-7.215 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos LICENSE=BSD SLOT=0 SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.215-without-extensions-src.tgz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=26a81f4b6b0ff69fbc3eba8869681491 diff --git a/metadata/md5-cache/sci-biology/mafft-7.305 b/metadata/md5-cache/sci-biology/mafft-7.305 index 6fb7b8ac3020..c7a5796cdda2 100644 --- a/metadata/md5-cache/sci-biology/mafft-7.305 +++ b/metadata/md5-cache/sci-biology/mafft-7.305 @@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos LICENSE=BSD SLOT=0 SRC_URI=http://mafft.cbrc.jp/alignment/software/mafft-7.305-without-extensions-src.tgz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4701ed0cbf5fff28c6de7c8b01e134af diff --git a/metadata/md5-cache/sci-biology/mcl-08.312 b/metadata/md5-cache/sci-biology/mcl-08.312 index 85cd212c40b8..354b51b0bc69 100644 --- a/metadata/md5-cache/sci-biology/mcl-08.312 +++ b/metadata/md5-cache/sci-biology/mcl-08.312 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-08-312.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=24cf3aad7375304f2721048d2f76b5f1 diff --git a/metadata/md5-cache/sci-biology/mcl-12.135 b/metadata/md5-cache/sci-biology/mcl-12.135 index df95b5278ac5..44e2ea47bec2 100644 --- a/metadata/md5-cache/sci-biology/mcl-12.135 +++ b/metadata/md5-cache/sci-biology/mcl-12.135 @@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=http://micans.org/mcl/src/mcl-12-135.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 autotools-utils 5a4611dfba155b1659528663fad4cd5e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=24cf3aad7375304f2721048d2f76b5f1 diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 index eded15eaa941..44dd58f5a29a 100644 --- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 +++ b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 estack 43ddf5aaffa7a8d0482df54d25a66a1f libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e perl-functions 01e8c68d5a528bbcda4d3c60205983df python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 estack 43ddf5aaffa7a8d0482df54d25a66a1f libtool 0081a71a261724730ec4c248494f044d multilib 97f470f374f2e94ccab04a2fb21d811e perl-functions 01e8c68d5a528bbcda4d3c60205983df python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=a4080439675628436c06de8db9f59c6e diff --git a/metadata/md5-cache/sci-biology/mira-4.0.2 b/metadata/md5-cache/sci-biology/mira-4.0.2 index 9eeaf64c3ed8..a87030848061 100644 --- a/metadata/md5-cache/sci-biology/mira-4.0.2 +++ b/metadata/md5-cache/sci-biology/mira-4.0.2 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=dev-libs/boost[threads] dev-util/google-perftools SLOT=0 SRC_URI=https://sourceforge.net/projects/mira-assembler/files/MIRA/stable/mira-4.0.2.tar.bz2 mirror://sourceforge/mira-assembler/mira_3rdparty_06-07-2012.tar.bz2 -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4e9fc8a550640febbc0b71544c16618c diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30 index 2bbf4a07ae3d..eec1c994f0f6 100644 --- a/metadata/md5-cache/sci-biology/mosaik-2.2.30 +++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30 @@ -6,5 +6,5 @@ KEYWORDS=~amd64 ~x86 LICENSE=GPL-2 SLOT=0 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot 3be1ab44131e8c0bbdaa75823008444b +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot 3be1ab44131e8c0bbdaa75823008444b _md5_=630686b35f8a549c580c5fd0e2cb02fc diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 index c55f0474ee0f..84eb90a8ab3d 100644 --- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 +++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran SLOT=0 SRC_URI=http://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 fortran-2 9e7f20c99213f0627ff7f873d4aaa25d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 fortran-2 9e7f20c99213f0627ff7f873d4aaa25d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=abcc03749068210ba5c44ba0b4a85e27 diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 index 800dd3d723ce..486213f9eae5 100644 --- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 +++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/ncurses mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0 ) SLOT=0 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=a082c9b1f1b5f9fa9b85e23eb7009a6d diff --git a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 index 3a1519758aef..136ad77782c8 100644 --- a/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 +++ b/metadata/md5-cache/sci-biology/mrbayes-3.1.2-r2 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/ncurses:0= mpi? ( virtual/mpi ) readline? ( sys-libs/readline:0= ) SLOT=0 SRC_URI=mirror://sourceforge/mrbayes/mrbayes-3.1.2.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=a944448f568e57bb9f221cd1f437ab09 diff --git a/metadata/md5-cache/sci-biology/mummer-3.23 b/metadata/md5-cache/sci-biology/mummer-3.23 index 52cd3c192591..2936bb69d820 100644 --- a/metadata/md5-cache/sci-biology/mummer-3.23 +++ b/metadata/md5-cache/sci-biology/mummer-3.23 @@ -8,5 +8,5 @@ LICENSE=Artistic RDEPEND=app-shells/tcsh dev-lang/perl SLOT=0 SRC_URI=mirror://sourceforge/mummer/MUMmer3.23.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=c256f298b416306c1be7005e7877f7b9 diff --git a/metadata/md5-cache/sci-biology/muscle-3.8.31 b/metadata/md5-cache/sci-biology/muscle-3.8.31 index 7d7a15fd07d8..7e26d0a08a0e 100644 --- a/metadata/md5-cache/sci-biology/muscle-3.8.31 +++ b/metadata/md5-cache/sci-biology/muscle-3.8.31 @@ -7,5 +7,5 @@ LICENSE=public-domain RDEPEND=!sci-libs/libmuscle SLOT=0 SRC_URI=http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=500ff424aff8c56744362bc87a3ff285 diff --git a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 index 1f6d0e7fec33..8e3d114f0bc6 100644 --- a/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 +++ b/metadata/md5-cache/sci-biology/ncbi-tools-2.2.26-r2 @@ -9,5 +9,5 @@ LICENSE=public-domain RDEPEND=app-shells/tcsh dev-lang/perl media-libs/libpng:0= X? ( media-libs/fontconfig x11-libs/motif:0= x11-libs/libICE x11-libs/libX11 x11-libs/libXft x11-libs/libXmu x11-libs/libXt ) SLOT=0 SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/ncbi.tar.gz -> ncbi-tools-2.2.26.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=770169ddfbcde7c5fbe57bff9b10ca14 diff --git a/metadata/md5-cache/sci-biology/paml-4.4c-r1 b/metadata/md5-cache/sci-biology/paml-4.4c-r1 index 482738e11a6a..881795c2ec0a 100644 --- a/metadata/md5-cache/sci-biology/paml-4.4c-r1 +++ b/metadata/md5-cache/sci-biology/paml-4.4c-r1 @@ -6,5 +6,5 @@ KEYWORDS=amd64 x86 LICENSE=free-noncomm SLOT=0 SRC_URI=http://abacus.gene.ucl.ac.uk/software/paml4.4c.tar.gz -_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=estack 43ddf5aaffa7a8d0482df54d25a66a1f multilib 97f470f374f2e94ccab04a2fb21d811e toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=c46d709378282d4ccbb567aaa00ee01a diff --git a/metadata/md5-cache/sci-biology/picard-1.103 b/metadata/md5-cache/sci-biology/picard-1.103 index 9a5043aaff2b..ed98dcaa15b9 100644 --- a/metadata/md5-cache/sci-biology/picard-1.103 +++ b/metadata/md5-cache/sci-biology/picard-1.103 @@ -9,5 +9,5 @@ LICENSE=Apache-2.0 RDEPEND=>=virtual/jre-1.6 dev-java/snappy:1.0 dev-java/cofoja:0 dev-java/commons-jexl:2 dev-java/ant-core:0 >=dev-java/java-config-2.2.0-r3 source? ( app-arch/zip ) SLOT=0 SRC_URI=https://dev.gentoo.org/~ercpe/distfiles/sci-biology/picard/picard-1.103.tar.bz2 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=09627e6bb74ee9997324bde01a56bcbd diff --git a/metadata/md5-cache/sci-biology/plink-1.07-r1 b/metadata/md5-cache/sci-biology/plink-1.07-r1 index 3258adec6cac..628626f3c331 100644 --- a/metadata/md5-cache/sci-biology/plink-1.07-r1 +++ b/metadata/md5-cache/sci-biology/plink-1.07-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib lapack? ( virtual/lapack ) SLOT=0 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/plink/dist/plink-1.07-src.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=b659cc5ab8af123ceaf15f1349214345 diff --git a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 index 1f46edb8e248..a59b53727653 100644 --- a/metadata/md5-cache/sci-biology/plink-1.90_pre140514 +++ b/metadata/md5-cache/sci-biology/plink-1.90_pre140514 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib virtual/cblas virtual/lapack SLOT=0 SRC_URI=http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> plink-1.90_pre140514.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=570249dc23feeff7b47b3e81df358196 diff --git a/metadata/md5-cache/sci-biology/poa-2-r1 b/metadata/md5-cache/sci-biology/poa-2-r1 index a3172b22a116..f92042f71464 100644 --- a/metadata/md5-cache/sci-biology/poa-2-r1 +++ b/metadata/md5-cache/sci-biology/poa-2-r1 @@ -7,5 +7,5 @@ KEYWORDS=~x86 ~amd64 LICENSE=GPL-2 SLOT=0 SRC_URI=mirror://sourceforge/poamsa/poaV2.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=4f0b8d6c2192465644af4890a995d48a diff --git a/metadata/md5-cache/sci-biology/probcons-1.12-r1 b/metadata/md5-cache/sci-biology/probcons-1.12-r1 index 76f849ff7415..1c6a3e417b66 100644 --- a/metadata/md5-cache/sci-biology/probcons-1.12-r1 +++ b/metadata/md5-cache/sci-biology/probcons-1.12-r1 @@ -7,5 +7,5 @@ LICENSE=public-domain RDEPEND=!sci-geosciences/gmt sci-visualization/gnuplot SLOT=0 SRC_URI=http://probcons.stanford.edu/probcons_v1_12.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=19a24bd3c543d599d5b3392e66b7022e diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.39 b/metadata/md5-cache/sci-biology/profphd-1.0.39 index 167def75ffc5..7067c9cae9cd 100644 --- a/metadata/md5-cache/sci-biology/profphd-1.0.39 +++ b/metadata/md5-cache/sci-biology/profphd-1.0.39 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profphd-utils SLOT=0 SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.39.tar.xz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8e866cc812e134cdc7a7837e5b60aa21 diff --git a/metadata/md5-cache/sci-biology/profphd-1.0.40 b/metadata/md5-cache/sci-biology/profphd-1.0.40 index 24cf13402de1..584f353d8f8f 100644 --- a/metadata/md5-cache/sci-biology/profphd-1.0.40 +++ b/metadata/md5-cache/sci-biology/profphd-1.0.40 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=dev-lang/perl dev-perl/librg-utils-perl sci-libs/profnet sci-libs/profphd-utils SLOT=0 SRC_URI=ftp://rostlab.org/profphd/profphd-1.0.40.tar.xz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=b641a6cfd444fa4b83d5963246948636 diff --git a/metadata/md5-cache/sci-biology/psipred-3.2.1 b/metadata/md5-cache/sci-biology/psipred-3.2.1 index 9e3e09f5ee5f..60776e2fe658 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.2.1 +++ b/metadata/md5-cache/sci-biology/psipred-3.2.1 @@ -8,5 +8,5 @@ LICENSE=psipred RDEPEND=sci-biology/ncbi-tools || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ ) SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred321.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=bf7aa50ff789d669fe4846e0e41828d7 diff --git a/metadata/md5-cache/sci-biology/psipred-3.3 b/metadata/md5-cache/sci-biology/psipred-3.3 index ada4bf30dc52..37ae39beded9 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.3 +++ b/metadata/md5-cache/sci-biology/psipred-3.3 @@ -8,5 +8,5 @@ LICENSE=psipred RDEPEND=sci-biology/ncbi-tools || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ ) SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.3.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz ) -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=d719359ecbbd5c0825e93788cc4f0af1 diff --git a/metadata/md5-cache/sci-biology/psipred-3.4 b/metadata/md5-cache/sci-biology/psipred-3.4 index 18ad110adcb7..8bc535a9b11d 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.4 +++ b/metadata/md5-cache/sci-biology/psipred-3.4 @@ -8,5 +8,5 @@ LICENSE=psipred RDEPEND=app-shells/tcsh sci-biology/ncbi-tools || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ ) SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.4.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz ) -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=671e20dbd509ebdd9e9c492e2c53b6a1 diff --git a/metadata/md5-cache/sci-biology/psipred-3.5 b/metadata/md5-cache/sci-biology/psipred-3.5 index 775516e628bf..e80a5cfa7e12 100644 --- a/metadata/md5-cache/sci-biology/psipred-3.5 +++ b/metadata/md5-cache/sci-biology/psipred-3.5 @@ -8,5 +8,5 @@ LICENSE=psipred RDEPEND=app-shells/tcsh sci-biology/ncbi-tools || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ ) SLOT=0 SRC_URI=http://bioinf.cs.ucl.ac.uk/downloads/psipred/psipred3.5.tar.gz test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz ) -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e prefix e51c7882b7b721e54e684f7eb143cbfe preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 _md5_=671e20dbd509ebdd9e9c492e2c53b6a1 diff --git a/metadata/md5-cache/sci-biology/pysam-0.12.0.1 b/metadata/md5-cache/sci-biology/pysam-0.12.0.1 index 5b42a96f7920..1c27069f1c19 100644 --- a/metadata/md5-cache/sci-biology/pysam-0.12.0.1 +++ b/metadata/md5-cache/sci-biology/pysam-0.12.0.1 @@ -2,7 +2,7 @@ DEFINED_PHASES=compile configure install prepare test DEPEND==sci-libs/htslib-1.5*:= dev-python/cython[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format EAPI=6 -HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam +HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/ IUSE=python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 KEYWORDS=~amd64 ~x86 LICENSE=MIT @@ -11,4 +11,4 @@ REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targe SLOT=0 SRC_URI=mirror://pypi/p/pysam/pysam-0.12.0.1.tar.gz _eclasses_=distutils-r1 c25bafd988acc946bfa457eac09621d8 multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 e9350ec46bb5c9f3504b4fbe8b8d8987 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 -_md5_=75fee2559408a6fd2a7fbed4518c11bc +_md5_=c02049dd445007999f7534a8e5d17656 diff --git a/metadata/md5-cache/sci-biology/raxml-7.2.6 b/metadata/md5-cache/sci-biology/raxml-7.2.6 index 064c243cf969..c5ffa0d621b6 100644 --- a/metadata/md5-cache/sci-biology/raxml-7.2.6 +++ b/metadata/md5-cache/sci-biology/raxml-7.2.6 @@ -8,5 +8,5 @@ LICENSE=GPL-2 REQUIRED_USE=cpu_flags_x86_sse3 SLOT=0 SRC_URI=http://wwwkramer.in.tum.de/exelixis/software/RAxML-7.2.6.tar.bz2 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=f2b8e0b4e5701d9b20bcbf9151c9b868 diff --git a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 b/metadata/md5-cache/sci-biology/rmblast-1.2-r1 index 5719e23cebd2..7fa11201ae27 100644 --- a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 +++ b/metadata/md5-cache/sci-biology/rmblast-1.2-r1 @@ -8,5 +8,5 @@ LICENSE=OSL-2.1 RDEPEND=dev-libs/boost SLOT=0 SRC_URI=http://www.repeatmasker.org/rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz https://dev.gentoo.org/~mgorny/dist/rmblast-1.2-gcc47.patch.bz2 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=1283e94bf3a231a794a498d2769aaa7d diff --git a/metadata/md5-cache/sci-biology/seaview-4.3.5 b/metadata/md5-cache/sci-biology/seaview-4.3.5 index a270f7d49325..bfdd04e64bf7 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.3.5 +++ b/metadata/md5-cache/sci-biology/seaview-4.3.5 @@ -9,5 +9,5 @@ LICENSE=public-domain RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.3.5.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=38cc02682d853c813df2b6e81cbb51c5 diff --git a/metadata/md5-cache/sci-biology/seaview-4.5.4 b/metadata/md5-cache/sci-biology/seaview-4.5.4 index a048f8dd6b03..01000e766ac1 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.5.4 +++ b/metadata/md5-cache/sci-biology/seaview-4.5.4 @@ -9,5 +9,5 @@ LICENSE=public-domain RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.5.4.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=38cc02682d853c813df2b6e81cbb51c5 diff --git a/metadata/md5-cache/sci-biology/seaview-4.6 b/metadata/md5-cache/sci-biology/seaview-4.6 index b4d99e0abbc3..50879b86f2df 100644 --- a/metadata/md5-cache/sci-biology/seaview-4.6 +++ b/metadata/md5-cache/sci-biology/seaview-4.6 @@ -9,5 +9,5 @@ LICENSE=public-domain RDEPEND=sys-libs/zlib x11-libs/fltk:1 x11-libs/libX11 xft? ( x11-libs/libXft x11-libs/fltk:1[xft] ) sci-biology/clustalw:2 || ( sci-libs/libmuscle sci-biology/muscle ) sci-biology/phyml SLOT=0 SRC_URI=ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=1a6723f1ab0e67cc0d63dd54a902900f diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 index be1cb5bf3ab4..20ba60eef3d2 100644 --- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 +++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=1.4 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=b6c214312349c09a0fe901e8d0235a32 diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 index f991e9fc77e6..a956e22c5075 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 +++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=0a4cc55d3cd27897618671fdafc13e2f diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0 b/metadata/md5-cache/sci-biology/seqan-2.4.0 index af7e0d6ec750..fe68621990ba 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.4.0 +++ b/metadata/md5-cache/sci-biology/seqan-2.4.0 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/s REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=ca34cde2b2fc2f8692469a016bc077f6 diff --git a/metadata/md5-cache/sci-biology/seqan-9999 b/metadata/md5-cache/sci-biology/seqan-9999 index 03775b98d94f..21798f7d85e7 100644 --- a/metadata/md5-cache/sci-biology/seqan-9999 +++ b/metadata/md5-cache/sci-biology/seqan-9999 @@ -8,5 +8,5 @@ LICENSE=BSD GPL-3 RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 git-r3 25b08efef07cea6bcd45b8c6dcce2782 ltprune 2770eed66a9b8ef944714cd0e968182e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 git-r3 25b08efef07cea6bcd45b8c6dcce2782 ltprune 607e058da37aa6dabfa408b7d61da72e multibuild 72647e255187a1fadc81097b3657e5c3 multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 27d7f9da7187d283b7f3eae8390b7b09 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=954c2a9b05e60f6a61eb27c1cc720117 diff --git a/metadata/md5-cache/sci-biology/shrimp-2.0.1 b/metadata/md5-cache/sci-biology/shrimp-2.0.1 index b6a5dd0226ce..ebbc3333129a 100644 --- a/metadata/md5-cache/sci-biology/shrimp-2.0.1 +++ b/metadata/md5-cache/sci-biology/shrimp-2.0.1 @@ -9,5 +9,5 @@ LICENSE=shrimp RDEPEND=!sci-biology/emboss !sci-mathematics/cado-nfs SLOT=0 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_0_1.src.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=33caa30e4cdcb3e86f4b1be8c6c30c46 diff --git a/metadata/md5-cache/sci-biology/shrimp-2.2.3 b/metadata/md5-cache/sci-biology/shrimp-2.2.3 index 5666e806025c..2752a9d14065 100644 --- a/metadata/md5-cache/sci-biology/shrimp-2.2.3 +++ b/metadata/md5-cache/sci-biology/shrimp-2.2.3 @@ -10,5 +10,5 @@ RDEPEND=!sci-mathematics/cado-nfs python_targets_python2_7? ( >=dev-lang/python- REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.src.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=98a7a2b9765ad5e245b1b7b9be67060b diff --git a/metadata/md5-cache/sci-biology/stride-20011129-r1 b/metadata/md5-cache/sci-biology/stride-20011129-r1 index 1ecdd843a6fe..8dc332f93e3a 100644 --- a/metadata/md5-cache/sci-biology/stride-20011129-r1 +++ b/metadata/md5-cache/sci-biology/stride-20011129-r1 @@ -7,5 +7,5 @@ LICENSE=STRIDE RESTRICT=mirror bindist SLOT=0 SRC_URI=ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/stride.tar.gz https://dev.gentoo.org/~jlec/distfiles/stride-20060723-update.patch.bz2 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=d73db26f06440dc2c2a1e25befe5d490 diff --git a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 index 7e76f92c946e..d4515b6c9e8a 100644 --- a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 +++ b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 @@ -10,5 +10,5 @@ RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/ REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 317a2557b4d7319a7418225f65accf77 python-utils-r1 c9de01becf9df3f8c10aeec3dc693f5d toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=efee8069c83c578acac8e57b429ad985 diff --git a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 b/metadata/md5-cache/sci-biology/tree-puzzle-5.2 index 3b15e0f8a3ea..f8f26cf2cc15 100644 --- a/metadata/md5-cache/sci-biology/tree-puzzle-5.2 +++ b/metadata/md5-cache/sci-biology/tree-puzzle-5.2 @@ -10,5 +10,5 @@ RDEPEND=mpi? ( virtual/mpi ) RESTRICT=test SLOT=0 SRC_URI=http://www.tree-puzzle.de/tree-puzzle-5.2.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=6f933fde60eb23f0e50fbe5e137bbc7e diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 index 5477c3de259c..8445bed0b017 100644 --- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 +++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 @@ -8,5 +8,5 @@ LICENSE=GPL-2 RDEPEND=x11-libs/wxGTK:3.0[X] SLOT=0 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz -_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wxwidgets 04e063b0eff26daaea83d859dd9d6e05 +_eclasses_=autotools 4842e626555a9a4344f34cef2e190b67 desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 libtool 0081a71a261724730ec4c248494f044d ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf wxwidgets 04e063b0eff26daaea83d859dd9d6e05 _md5_=ce129f3e61a849cfd3654e5a9fa4b17a diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40 index dfc8abd59b50..4d11ff3b0bea 100644 --- a/metadata/md5-cache/sci-biology/uchime-4.2.40 +++ b/metadata/md5-cache/sci-biology/uchime-4.2.40 @@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux LICENSE=public-domain SLOT=0 SRC_URI=http://drive5.com/uchime/uchime4.2.40_src.tar.gz -_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 +_eclasses_=cmake-utils d2f8cff68b90b869ef9d460c6f3c4e2e desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 9a5f039771f143195164a15a4faa41a1 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 flag-o-matic 5128c4729303400bd8d4b0b966530955 ltprune 607e058da37aa6dabfa408b7d61da72e multilib 97f470f374f2e94ccab04a2fb21d811e multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils ebb2eaddc6331c4fa000b8eb8f6fe074 preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 26ca8a8bd95d6a74122c08ba98a4ee72 xdg-utils f2c8335407f0b935b0a96d4adf23ef25 _md5_=6adcbb8c658bdc3c40f797c61f5c58b0 diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260 index b2f6f0a63b45..19a21842e789 100644 --- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260 +++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260 @@ -10,5 +10,5 @@ RDEPEND=app-arch/unzip !