From 6bd95d1f6320b8666a31ec949183aaa3088aa16f Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sun, 25 Mar 2018 19:22:13 +0100 Subject: gentoo resync : 25.03.2018 --- metadata/md5-cache/sci-biology/Manifest.gz | Bin 33648 -> 33665 bytes metadata/md5-cache/sci-biology/amap-2.2-r3 | 2 +- metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 | 2 +- metadata/md5-cache/sci-biology/beast-mcmc-9999 | 2 +- metadata/md5-cache/sci-biology/gatk-2.4 | 2 +- metadata/md5-cache/sci-biology/gatk-9999 | 2 +- metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 | 2 +- metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 | 2 +- metadata/md5-cache/sci-biology/picard-1.103 | 2 +- 9 files changed, 8 insertions(+), 8 deletions(-) (limited to 'metadata/md5-cache/sci-biology') diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz index cd8da322cfff..152928d0fcd6 100644 Binary files a/metadata/md5-cache/sci-biology/Manifest.gz and b/metadata/md5-cache/sci-biology/Manifest.gz differ diff --git a/metadata/md5-cache/sci-biology/amap-2.2-r3 b/metadata/md5-cache/sci-biology/amap-2.2-r3 index fb05abce9d4b..3dd59e5817f3 100644 --- a/metadata/md5-cache/sci-biology/amap-2.2-r3 +++ b/metadata/md5-cache/sci-biology/amap-2.2-r3 @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=java? ( >=virtual/jre-1.5 ) java? ( >=dev-java/java-config-2.2.0-r3 ) SLOT=0 SRC_URI=http://baboon.math.berkeley.edu/amap/download/amap.2.2.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-opt-2 77d2e22d0de7640f817d20e861c0ff3f java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-opt-2 77d2e22d0de7640f817d20e861c0ff3f java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 _md5_=6bd792e8b76c06ee993b88f83e48b907 diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 b/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 index 171dc05bfdce..f5a53e5eb50f 100644 --- a/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 +++ b/metadata/md5-cache/sci-biology/beast-mcmc-1.7.5-r1 @@ -9,5 +9,5 @@ LICENSE=LGPL-3 RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java dev-java/commons-math:2 dev-java/jdom-jaxen:1.0 >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=https://dev.gentoo.org/~jlec/distfiles/beast-mcmc-1.7.5.tar.xz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 _md5_=ff6d5ad394902a1137f7b3a310e2da17 diff --git a/metadata/md5-cache/sci-biology/beast-mcmc-9999 b/metadata/md5-cache/sci-biology/beast-mcmc-9999 index 1c7bd0825a8a..3c2553392ce7 100644 --- a/metadata/md5-cache/sci-biology/beast-mcmc-9999 +++ b/metadata/md5-cache/sci-biology/beast-mcmc-9999 @@ -7,5 +7,5 @@ IUSE=elibc_FreeBSD elibc_FreeBSD LICENSE=LGPL-3 RDEPEND=>=virtual/jre-1.5 dev-java/colt:0 dev-java/jdom:0 dev-java/itext:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java dev-java/commons-math:2 dev-java/jdom-jaxen:1.0 >=dev-java/java-config-2.2.0-r3 SLOT=0 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 subversion a5d5826a85609611f098c0553eb24cc1 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 subversion a5d5826a85609611f098c0553eb24cc1 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 _md5_=8ad11964919894b7a04467aea903b1c3 diff --git a/metadata/md5-cache/sci-biology/gatk-2.4 b/metadata/md5-cache/sci-biology/gatk-2.4 index 88f6142cb6c9..c7c442630b45 100644 --- a/metadata/md5-cache/sci-biology/gatk-2.4 +++ b/metadata/md5-cache/sci-biology/gatk-2.4 @@ -9,5 +9,5 @@ LICENSE=MIT RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=https://github.com/broadgsa/gatk/archive/2.4.tar.gz -> gatk-2.4.tar.gz -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot 3be1ab44131e8c0bbdaa75823008444b versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf vcs-snapshot 3be1ab44131e8c0bbdaa75823008444b versionator ce21313503c41896ebcd7d58b0607e37 _md5_=8afea474ed6c1f4ad5ac6d6a18c49542 diff --git a/metadata/md5-cache/sci-biology/gatk-9999 b/metadata/md5-cache/sci-biology/gatk-9999 index a07d3507d738..be9e78ba98c6 100644 --- a/metadata/md5-cache/sci-biology/gatk-9999 +++ b/metadata/md5-cache/sci-biology/gatk-9999 @@ -7,5 +7,5 @@ IUSE=elibc_FreeBSD elibc_FreeBSD LICENSE=MIT RDEPEND=>=virtual/jre-1.6 >=dev-java/java-config-2.2.0-r3 SLOT=0 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 195a672bfaf52d868442171c9469bbb6 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 git-2 195a672bfaf52d868442171c9469bbb6 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 _md5_=df4fa840e567320d0f100f0073200f23 diff --git a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 index 0f9cb1c424b4..3e0a45a09df3 100644 --- a/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 +++ b/metadata/md5-cache/sci-biology/goby-1.9.7.3-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 LGPL-3 RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev-java/commons-io:1 dev-java/protobuf-java:0 dev-java/fastutil:0 dev-java/log4j dev-java/jsap dev-java/commons-configuration dev-java/commons-math:2 cpp? ( ~sci-biology/goby-cpp-1.9.7.3 ) >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.7.3/goby_1.9.7.3-deps.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 _md5_=d8bbf59f45f0b32b55de88f3c5233883 diff --git a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 index 6b6c831b4ee1..42118bf4e1ae 100644 --- a/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 +++ b/metadata/md5-cache/sci-biology/goby-1.9.8.1-r1 @@ -9,5 +9,5 @@ LICENSE=GPL-3 LGPL-3 RDEPEND=>=virtual/jre-1.6 dev-java/commons-logging dev-java/commons-lang:2.1 dev-java/commons-io:1 dev-java/protobuf-java:0 dev-java/fastutil:0 dev-java/log4j dev-java/jsap dev-java/commons-configuration dev-java/commons-math:2 cpp? ( ~sci-biology/goby-cpp-1.9.8.1 ) >=dev-java/java-config-2.2.0-r3 SLOT=0 SRC_URI=http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-src.zip http://chagall.med.cornell.edu/goby/releases/archive/release-goby_1.9.8.1/goby_1.9.8.1-deps.zip -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 _md5_=d8bbf59f45f0b32b55de88f3c5233883 diff --git a/metadata/md5-cache/sci-biology/picard-1.103 b/metadata/md5-cache/sci-biology/picard-1.103 index eb08149d0775..9a5043aaff2b 100644 --- a/metadata/md5-cache/sci-biology/picard-1.103 +++ b/metadata/md5-cache/sci-biology/picard-1.103 @@ -9,5 +9,5 @@ LICENSE=Apache-2.0 RDEPEND=>=virtual/jre-1.6 dev-java/snappy:1.0 dev-java/cofoja:0 dev-java/commons-jexl:2 dev-java/ant-core:0 >=dev-java/java-config-2.2.0-r3 source? ( app-arch/zip ) SLOT=0 SRC_URI=https://dev.gentoo.org/~ercpe/distfiles/sci-biology/picard/picard-1.103.tar.bz2 -_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 4e2b30d918dda38a51839a4d45282b62 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 +_eclasses_=desktop 2ccd1dd1dd7bfb8795eea024a4f91bb6 epatch 8233751dc5105a6ae8fcd86ce2bb0247 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 63392afb034aad67f17fa129019eb4d9 java-ant-2 ea15ab9e838d1062abd6b53de2045d50 java-pkg-2 c4e6af2574fd1dc79b43a6e27af4b5fb java-utils-2 0ee72667014428e01a01df2345244cf3 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 97f470f374f2e94ccab04a2fb21d811e preserve-libs ef207dc62baddfddfd39a164d9797648 toolchain-funcs 885c7d8dd70a58825f3d17e35a3cd1e9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator ce21313503c41896ebcd7d58b0607e37 _md5_=09627e6bb74ee9997324bde01a56bcbd -- cgit v1.2.3