From 0706fc6986773f4e4d391deff4ad5143c464ea4e Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Sun, 24 Mar 2019 17:44:59 +0000 Subject: Revert "gentoo resync : 24.03.2019" This reverts commit aa3411e241a201d53a2689766fe419f2756819f3. --- metadata/md5-cache/sci-biology/HTSeq-0.9.1 | 10 +++++----- metadata/md5-cache/sci-biology/HTSeq-9999 | 10 +++++----- metadata/md5-cache/sci-biology/Manifest.gz | Bin 33757 -> 33770 bytes metadata/md5-cache/sci-biology/amos-3.1.0-r4 | 4 ++-- metadata/md5-cache/sci-biology/bcftools-1.5 | 2 +- metadata/md5-cache/sci-biology/bcftools-1.9 | 6 +++--- metadata/md5-cache/sci-biology/bedtools-2.26.0 | 4 ++-- metadata/md5-cache/sci-biology/biopandas-0.2.1 | 10 +++++----- metadata/md5-cache/sci-biology/biopython-1.68 | 10 +++++----- metadata/md5-cache/sci-biology/biopython-1.71 | 12 ++++++------ metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 | 6 +++--- metadata/md5-cache/sci-biology/last-299-r1 | 4 ++-- metadata/md5-cache/sci-biology/meme-4.11.2_p2 | 6 +++--- metadata/md5-cache/sci-biology/pysam-0.12.0.1 | 10 +++++----- metadata/md5-cache/sci-biology/samtools-0.1.20-r3 | 6 +++--- metadata/md5-cache/sci-biology/samtools-1.5 | 2 +- metadata/md5-cache/sci-biology/samtools-1.9 | 6 +++--- metadata/md5-cache/sci-biology/seqan-1.4.2-r1 | 2 +- metadata/md5-cache/sci-biology/seqan-2.2.0-r1 | 2 +- metadata/md5-cache/sci-biology/seqan-2.4.0 | 2 +- metadata/md5-cache/sci-biology/seqan-9999 | 2 +- metadata/md5-cache/sci-biology/shrimp-2.2.3 | 4 ++-- metadata/md5-cache/sci-biology/tophat-2.1.1-r4 | 6 +++--- metadata/md5-cache/sci-biology/vienna-rna-2.1.1 | 2 +- metadata/md5-cache/sci-biology/vienna-rna-2.1.8 | 2 +- 25 files changed, 65 insertions(+), 65 deletions(-) (limited to 'metadata/md5-cache/sci-biology') diff --git a/metadata/md5-cache/sci-biology/HTSeq-0.9.1 b/metadata/md5-cache/sci-biology/HTSeq-0.9.1 index 44b5a7c8a36a..fa16ab68245d 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-0.9.1 +++ b/metadata/md5-cache/sci-biology/HTSeq-0.9.1 @@ -1,14 +1,14 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] >=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] +DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] >=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files EAPI=6 HOMEPAGE=https://htseq.readthedocs.io/ -IUSE=python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 +IUSE=python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 KEYWORDS=~amd64 LICENSE=GPL-3+ -RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] -REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 ) +RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] +REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 SRC_URI=mirror://pypi/H/HTSeq/HTSeq-0.9.1.tar.gz -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=baebb3e5c138076f90cdaad5bc41573f diff --git a/metadata/md5-cache/sci-biology/HTSeq-9999 b/metadata/md5-cache/sci-biology/HTSeq-9999 index 082b0e1996bb..d8b434faecea 100644 --- a/metadata/md5-cache/sci-biology/HTSeq-9999 +++ b/metadata/md5-cache/sci-biology/HTSeq-9999 @@ -1,12 +1,12 @@ DEFINED_PHASES=compile configure install prepare test unpack -DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] >=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] >=dev-vcs/git-1.8.2.1[curl] +DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] >=dev-lang/swig-3.0.8 dev-python/cython[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] >=dev-vcs/git-1.8.2.1[curl] DESCRIPTION=Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files EAPI=6 HOMEPAGE=https://htseq.readthedocs.io/ -IUSE=python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 +IUSE=python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 LICENSE=GPL-3+ -RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] -REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 ) +RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-biology/pysam[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] +REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 git-r3 0d4635eeb5a96cd5315597a47eba25c9 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 git-r3 0d4635eeb5a96cd5315597a47eba25c9 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=baebb3e5c138076f90cdaad5bc41573f diff --git a/metadata/md5-cache/sci-biology/Manifest.gz b/metadata/md5-cache/sci-biology/Manifest.gz index 2003c3f3a9be..0998d4a50e74 100644 Binary files a/metadata/md5-cache/sci-biology/Manifest.gz and b/metadata/md5-cache/sci-biology/Manifest.gz differ diff --git a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 b/metadata/md5-cache/sci-biology/amos-3.1.0-r4 index 998cf1235047..8d5d80515806 100644 --- a/metadata/md5-cache/sci-biology/amos-3.1.0-r4 +++ b/metadata/md5-cache/sci-biology/amos-3.1.0-r4 @@ -6,9 +6,9 @@ HOMEPAGE=http://amos.sourceforge.net/ IUSE=python_targets_python2_7 KEYWORDS=~amd64 ~x86 LICENSE=Artistic -RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-perl/DBI dev-perl/Statistics-Descriptive sci-biology/mummer +RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-perl/DBI dev-perl/Statistics-Descriptive sci-biology/mummer REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=mirror://sourceforge/amos/amos-3.1.0.tar.gz https://dev.gentoo.org/~soap/distfiles/amos-3.1.0-fix-c++14.patch.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=aec6d1c76d5ea621c66e803800e2b3c4 diff --git a/metadata/md5-cache/sci-biology/bcftools-1.5 b/metadata/md5-cache/sci-biology/bcftools-1.5 index b9d58388e552..a1abfc0a8880 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.5 +++ b/metadata/md5-cache/sci-biology/bcftools-1.5 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl =sci-libs/htslib-1.5*:= sys-libs/zlib python_targets_pytho REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.5/bcftools-1.5.tar.bz2 -_eclasses_=multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 +_eclasses_=multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=e289371e3fec376baf8fe36c652ca521 diff --git a/metadata/md5-cache/sci-biology/bcftools-1.9 b/metadata/md5-cache/sci-biology/bcftools-1.9 index f210e74ff807..0615c00beb35 100644 --- a/metadata/md5-cache/sci-biology/bcftools-1.9 +++ b/metadata/md5-cache/sci-biology/bcftools-1.9 @@ -1,14 +1,14 @@ DEFINED_PHASES=configure prepare setup -DEPEND=dev-lang/perl =sci-libs/htslib-1.9*:= sys-libs/zlib:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] +DEPEND=dev-lang/perl =sci-libs/htslib-1.9*:= sys-libs/zlib:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] DESCRIPTION=Utilities for variant calling and manipulating VCF and BCF files EAPI=7 HOMEPAGE=http://www.htslib.org IUSE=python_targets_python2_7 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND=dev-lang/perl =sci-libs/htslib-1.9*:= sys-libs/zlib:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] +RDEPEND=dev-lang/perl =sci-libs/htslib-1.9*:= sys-libs/zlib:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2 -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=67c63191569c3370d6eca3ec783afbea diff --git a/metadata/md5-cache/sci-biology/bedtools-2.26.0 b/metadata/md5-cache/sci-biology/bedtools-2.26.0 index 3e862a31f9f6..df9687374d06 100644 --- a/metadata/md5-cache/sci-biology/bedtools-2.26.0 +++ b/metadata/md5-cache/sci-biology/bedtools-2.26.0 @@ -1,5 +1,5 @@ DEFINED_PHASES=configure install setup -DEPEND=|| ( dev-lang/python:3.6 dev-lang/python:3.5 >=dev-lang/python-2.7.5-r2:2.7 ) test? ( sci-libs/htslib sci-biology/samtools:0 ) +DEPEND=|| ( dev-lang/python:3.6 dev-lang/python:3.5 dev-lang/python:3.4 >=dev-lang/python-2.7.5-r2:2.7 ) test? ( sci-libs/htslib sci-biology/samtools:0 ) DESCRIPTION=Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats EAPI=6 HOMEPAGE=https://bedtools.readthedocs.io/ @@ -9,5 +9,5 @@ LICENSE=GPL-2 RDEPEND=sys-libs/zlib SLOT=0 SRC_URI=https://github.com/arq5x/bedtools2/releases/download/v2.26.0/bedtools-2.26.0.tar.gz https://dev.gentoo.org/~mgorny/dist/bedtools-2.26.0-fix-buildsystem.patch.bz2 -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=e072d90aa6492a70f261161c8d5551e5 diff --git a/metadata/md5-cache/sci-biology/biopandas-0.2.1 b/metadata/md5-cache/sci-biology/biopandas-0.2.1 index ccbb7a54d733..6eb6159219ff 100644 --- a/metadata/md5-cache/sci-biology/biopandas-0.2.1 +++ b/metadata/md5-cache/sci-biology/biopandas-0.2.1 @@ -1,14 +1,14 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] test? ( dev-python/nose[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] +DEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] test? ( dev-python/nose[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] DESCRIPTION=Molecular Structures in Pandas DataFrames EAPI=6 HOMEPAGE=https://rasbt.github.io/biopandas/ https://github.com/rasbt/biopandas https://pypi.org/project/BioPandas/ -IUSE=test python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 +IUSE=test python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux LICENSE=BSD -RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] -REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 ) +RDEPEND=dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pandas[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sci-libs/scipy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] +REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 SRC_URI=mirror://pypi/B/BioPandas/biopandas-0.2.1.tar.gz -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=ea88f22f7675491064ad08658a2ba291 diff --git a/metadata/md5-cache/sci-biology/biopython-1.68 b/metadata/md5-cache/sci-biology/biopython-1.68 index 3284fa61867e..dcd86afedfb7 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.68 +++ b/metadata/md5-cache/sci-biology/biopython-1.68 @@ -1,14 +1,14 @@ DEFINED_PHASES=compile configure install postinst prepare test -DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sys-devel/flex python_targets_pypy? ( >=virtual/pypy-5:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-)] +DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] sys-devel/flex python_targets_pypy? ( >=virtual/pypy-5:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] DESCRIPTION=Python modules for computational molecular biology EAPI=6 HOMEPAGE=http://www.biopython.org/ https://pypi.org/project/biopython/ -IUSE=python_targets_pypy python_targets_python2_7 python_targets_python3_5 +IUSE=python_targets_pypy python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux LICENSE=HPND -RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_pypy? ( >=virtual/pypy-5:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_5(-)] -REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_5 ) +RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/networkx[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/numpy[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/rdflib[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] dev-python/reportlab[python_targets_python2_7(-)?,-python_single_target_python2_7(-),python_targets_python3_4(-)?,-python_single_target_python3_4(-),python_targets_python3_5(-)?,-python_single_target_python3_5(-)] dev-python/pydot[python_targets_python2_7(-)?,-python_single_target_python2_7(-)] python_targets_pypy? ( >=virtual/pypy-5:0= ) python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) >=dev-lang/python-exec-2:=[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-)] +REQUIRED_USE=|| ( python_targets_pypy python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 ) SLOT=0 SRC_URI=http://www.biopython.org/DIST/biopython-1.68.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=d27e2e9df832a55985e7f459f9e4fa81 diff --git a/metadata/md5-cache/sci-biology/biopython-1.71 b/metadata/md5-cache/sci-biology/biopython-1.71 index 698f3bea98a3..b06fd1577134 100644 --- a/metadata/md5-cache/sci-biology/biopython-1.71 +++ b/metadata/md5-cache/sci-biology/biopython-1.71 @@ -1,15 +1,15 @@ -BDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] +BDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] DEFINED_PHASES=compile configure install postinst prepare test -DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/networkx[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/rdflib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/reportlab[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pydot[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sys-devel/flex +DEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/networkx[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/rdflib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/reportlab[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pydot[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] sys-devel/flex DESCRIPTION=Python modules for computational molecular biology EAPI=7 HOMEPAGE=https://www.biopython.org/ https://pypi.org/project/biopython/ -IUSE=python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 +IUSE=python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux LICENSE=HPND -RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/networkx[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/rdflib[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/reportlab[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pydot[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] -REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 ) +RDEPEND=dev-python/matplotlib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/networkx[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/numpy[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/rdflib[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pygraphviz[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/reportlab[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/pydot[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] +REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 SRC_URI=mirror://pypi/b/biopython/biopython-1.71.tar.gz -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 eutils 6e6c2737b59a4b982de6fb3ecefd87f8 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 eutils 6e6c2737b59a4b982de6fb3ecefd87f8 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=0227795578e2ffd9791cbebddc3ee0ab diff --git a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 index 02f8c1ce2ebb..664f3e61e695 100644 --- a/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 +++ b/metadata/md5-cache/sci-biology/cufflinks-2.2.1-r2 @@ -1,14 +1,14 @@ DEFINED_PHASES=configure prepare setup -DEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-cpp/eigen:3 virtual/pkgconfig >=app-portage/elt-patches-20170815 !=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-cpp/eigen:3 virtual/pkgconfig >=app-portage/elt-patches-20170815 !=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Transcript assembly and differential expression/regulation for RNA-Seq EAPI=6 HOMEPAGE=http://cufflinks.cbcb.umd.edu/ IUSE=debug python_targets_python2_7 KEYWORDS=~amd64 ~x86 LICENSE=Artistic -RDEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] +RDEPEND=sci-biology/samtools:0.1-legacy >=dev-libs/boost-1.62.0:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://cufflinks.cbcb.umd.edu/downloads/cufflinks-2.2.1.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=8e0065b0f455fa63e987f6182ed61fa1 diff --git a/metadata/md5-cache/sci-biology/last-299-r1 b/metadata/md5-cache/sci-biology/last-299-r1 index c596e60563e0..1eb04a36ab62 100644 --- a/metadata/md5-cache/sci-biology/last-299-r1 +++ b/metadata/md5-cache/sci-biology/last-299-r1 @@ -6,9 +6,9 @@ HOMEPAGE=http://last.cbrc.jp/ IUSE=python_targets_python2_7 KEYWORDS=~amd64 ~x86 LICENSE=GPL-3 -RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] +RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://last.cbrc.jp/last-299.zip -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=ec5206661373a6ef6ad77450dfbdb915 diff --git a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 index ec60149380d8..3aacbe448340 100644 --- a/metadata/md5-cache/sci-biology/meme-4.11.2_p2 +++ b/metadata/md5-cache/sci-biology/meme-4.11.2_p2 @@ -1,14 +1,14 @@ DEFINED_PHASES=configure install prepare setup test -DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) >=app-portage/elt-patches-20170815 !=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) >=app-portage/elt-patches-20170815 !=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=The MEME/MAST system - Motif discovery and search EAPI=6 HOMEPAGE=http://meme-suite.org/tools/meme IUSE=debug doc examples mpi python_targets_python2_7 KEYWORDS=~amd64 ~x86 LICENSE=meme -RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) +RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] app-shells/tcsh dev-libs/libxml2:2 dev-libs/libxslt sys-libs/zlib app-text/ghostscript-gpl media-gfx/imagemagick dev-lang/perl:= dev-perl/HTML-Parser dev-perl/HTML-Template dev-perl/Log-Log4perl dev-perl/Math-CDF dev-perl/XML-Compile-SOAP dev-perl/XML-Compile-WSDL11 dev-perl/XML-Parser dev-perl/XML-Simple virtual/perl-Data-Dumper virtual/perl-Exporter virtual/perl-File-Path virtual/perl-File-Spec virtual/perl-File-Temp virtual/perl-Getopt-Long virtual/perl-Scalar-List-Utils virtual/perl-Time-HiRes mpi? ( virtual/mpi ) REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://meme-suite.org/meme-software/4.11.2/meme_4.11.2.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 estack 43ddf5aaffa7a8d0482df54d25a66a1f libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 perl-functions f2e3420aed32cf1abe33b4129b842636 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 versionator 2352c3fc97241f6a02042773c8287748 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 estack 43ddf5aaffa7a8d0482df54d25a66a1f libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 perl-functions f2e3420aed32cf1abe33b4129b842636 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 versionator 2352c3fc97241f6a02042773c8287748 _md5_=a4080439675628436c06de8db9f59c6e diff --git a/metadata/md5-cache/sci-biology/pysam-0.12.0.1 b/metadata/md5-cache/sci-biology/pysam-0.12.0.1 index 4042143c0936..258873b5c6f0 100644 --- a/metadata/md5-cache/sci-biology/pysam-0.12.0.1 +++ b/metadata/md5-cache/sci-biology/pysam-0.12.0.1 @@ -1,14 +1,14 @@ DEFINED_PHASES=compile configure install prepare test -DEPEND==sci-libs/htslib-1.5*:= dev-python/cython[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] +DEPEND==sci-libs/htslib-1.5*:= dev-python/cython[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] dev-python/setuptools[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] DESCRIPTION=Python interface for the SAM/BAM sequence alignment and mapping format EAPI=6 HOMEPAGE=https://github.com/pysam-developers/pysam https://pypi.org/project/pysam/ -IUSE=python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 +IUSE=python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 KEYWORDS=~amd64 ~x86 LICENSE=MIT -RDEPEND==sci-libs/htslib-1.5*:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] -REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_5 python_targets_python3_6 ) +RDEPEND==sci-libs/htslib-1.5*:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) python_targets_python3_4? ( dev-lang/python:3.4 ) python_targets_python3_5? ( dev-lang/python:3.5 ) python_targets_python3_6? ( dev-lang/python:3.6 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] +REQUIRED_USE=|| ( python_targets_python2_7 python_targets_python3_4 python_targets_python3_5 python_targets_python3_6 ) SLOT=0 SRC_URI=mirror://pypi/p/pysam/pysam-0.12.0.1.tar.gz -_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=c02049dd445007999f7534a8e5d17656 diff --git a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 index 53cb35a88b12..c0f34952f5ca 100644 --- a/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 +++ b/metadata/md5-cache/sci-biology/samtools-0.1.20-r3 @@ -1,14 +1,14 @@ DEFINED_PHASES=compile install postinst prepare setup -DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl virtual/pkgconfig +DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl virtual/pkgconfig DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats EAPI=6 HOMEPAGE=http://samtools.sourceforge.net/ IUSE=examples python_targets_python2_7 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos LICENSE=MIT -RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl +RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sys-libs/ncurses:0= dev-lang/perl REQUIRED_USE=python_targets_python2_7 SLOT=0.1-legacy SRC_URI=https://github.com/samtools/samtools/archive/0.1.20.tar.gz -> samtools-0.1.20.tar.gz -_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 +_eclasses_=multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=fa48f0b2be780a9264eb9d727ec53335 diff --git a/metadata/md5-cache/sci-biology/samtools-1.5 b/metadata/md5-cache/sci-biology/samtools-1.5 index 4e4515ca5b9b..0da561276241 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.5 +++ b/metadata/md5-cache/sci-biology/samtools-1.5 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl =sci-libs/htslib-1.5* sys-libs/ncurses:0= sys-libs/zlib py REQUIRED_USE=|| ( python_targets_python2_7 ) SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.5.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=8d92b4a814f62eab87bac2be22c2470c diff --git a/metadata/md5-cache/sci-biology/samtools-1.9 b/metadata/md5-cache/sci-biology/samtools-1.9 index 7c09e1296a70..bd581da13dab 100644 --- a/metadata/md5-cache/sci-biology/samtools-1.9 +++ b/metadata/md5-cache/sci-biology/samtools-1.9 @@ -1,15 +1,15 @@ BDEPEND=>=app-portage/elt-patches-20170815 !=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DEFINED_PHASES=install prepare setup test -DEPEND=dev-lang/perl =sci-libs/htslib-1.9* sys-libs/ncurses:0= sys-libs/zlib:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] virtual/pkgconfig +DEPEND=dev-lang/perl =sci-libs/htslib-1.9* sys-libs/ncurses:0= sys-libs/zlib:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] virtual/pkgconfig DESCRIPTION=Utilities for analysing and manipulating the SAM/BAM alignment formats EAPI=7 HOMEPAGE=http://www.htslib.org/ IUSE=examples python_targets_python2_7 KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos LICENSE=MIT -RDEPEND=dev-lang/perl =sci-libs/htslib-1.9* sys-libs/ncurses:0= sys-libs/zlib:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] +RDEPEND=dev-lang/perl =sci-libs/htslib-1.9* sys-libs/ncurses:0= sys-libs/zlib:= python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=mirror://sourceforge/samtools/samtools-1.9.tar.bz2 -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 libtool f143db5a74ccd9ca28c1234deffede96 multilib b2f01ad412baf81650c23fcf0975fa33 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 _md5_=7e8913a97cbbcf5ee0158a89a42fa92c diff --git a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 index a3f1681b9aa1..7d66a6a79e80 100644 --- a/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 +++ b/metadata/md5-cache/sci-biology/seqan-1.4.2-r1 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=1.4 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-1.4.2.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=1b7be060ecec73f1e66596a71b90a92a diff --git a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 index 6a583c2b967f..604879294b49 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 +++ b/metadata/md5-cache/sci-biology/seqan-2.2.0-r1 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2 sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seqan REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 SRC_URI=http://packages.seqan.de/seqan-src/seqan-src-2.2.0.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf versionator 2352c3fc97241f6a02042773c8287748 xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=aaf78a04252c5e6c2b92b04c7211b73c diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0 b/metadata/md5-cache/sci-biology/seqan-2.4.0 index b6637fcf9582..1f848eb0e8c4 100644 --- a/metadata/md5-cache/sci-biology/seqan-2.4.0 +++ b/metadata/md5-cache/sci-biology/seqan-2.4.0 @@ -10,5 +10,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/s REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=ca34cde2b2fc2f8692469a016bc077f6 diff --git a/metadata/md5-cache/sci-biology/seqan-9999 b/metadata/md5-cache/sci-biology/seqan-9999 index 20ab44f832ab..c7d4096c0b4d 100644 --- a/metadata/md5-cache/sci-biology/seqan-9999 +++ b/metadata/md5-cache/sci-biology/seqan-9999 @@ -8,5 +8,5 @@ LICENSE=BSD GPL-3 RDEPEND=app-arch/bzip2:= sys-libs/zlib:= !!sci-biology/seqan:2.0 !!sci-biology/seqan:2.1 !!sci-biology/seqan:2.2 REQUIRED_USE=cpu_flags_x86_sse4_1 SLOT=0 -_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf git-r3 0d4635eeb5a96cd5315597a47eba25c9 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=cmake-utils ab10bd85e5d38e2a32077bcd91faa1b6 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf git-r3 0d4635eeb5a96cd5315597a47eba25c9 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 ninja-utils 132cbb376048d079b5a012f5467c4e7f preserve-libs ef207dc62baddfddfd39a164d9797648 python-any-r1 4900ae970f827a22d33d41bd8b8f9ace python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=954c2a9b05e60f6a61eb27c1cc720117 diff --git a/metadata/md5-cache/sci-biology/shrimp-2.2.3 b/metadata/md5-cache/sci-biology/shrimp-2.2.3 index feb7d4988f8a..fe6294e56aef 100644 --- a/metadata/md5-cache/sci-biology/shrimp-2.2.3 +++ b/metadata/md5-cache/sci-biology/shrimp-2.2.3 @@ -6,9 +6,9 @@ HOMEPAGE=http://compbio.cs.toronto.edu/shrimp/ IUSE=custom-cflags +cpu_flags_x86_sse2 python_targets_python2_7 KEYWORDS=~amd64 ~x86 LICENSE=shrimp -RDEPEND=!sci-mathematics/cado-nfs python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] +RDEPEND=!sci-mathematics/cado-nfs python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_2_2_3.src.tar.gz -_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=98a7a2b9765ad5e245b1b7b9be67060b diff --git a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 index 184c9fa6c0b9..bb6816ffee37 100644 --- a/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 +++ b/metadata/md5-cache/sci-biology/tophat-2.1.1-r4 @@ -1,14 +1,14 @@ DEFINED_PHASES=configure install postinst prepare setup -DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] dev-python/intervaltree[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-python/sortedcontainers[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170815 !=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 +DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] dev-python/intervaltree[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-python/sortedcontainers[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170815 !=sys-devel/automake-1.16.1:1.16 >=sys-devel/automake-1.15.1:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4 DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2 EAPI=6 HOMEPAGE=https://ccb.jhu.edu/software/tophat/ IUSE=debug python_targets_python2_7 KEYWORDS=~amd64 ~x86 LICENSE=Artistic -RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] dev-python/intervaltree[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-python/sortedcontainers[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 +RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] dev-python/intervaltree[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] dev-python/sortedcontainers[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),python_single_target_python2_7(+)] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 REQUIRED_USE=python_targets_python2_7 SLOT=0 SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 desktop b1d22ac8bdd4679ab79c71aca235009d epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 flag-o-matic a09389deba2c0a7108b581e02c7cecbf libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multilib b2f01ad412baf81650c23fcf0975fa33 preserve-libs ef207dc62baddfddfd39a164d9797648 python-single-r1 3a0fc81f484bfdbd9c2b7448015a36e4 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf _md5_=efee8069c83c578acac8e57b429ad985 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 index c088ad91155d..9c3c2f307299 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.1 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/~ronny/RNA/ViennaRNA-2.1.1.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=1e58c830b49ced05ae9960fcc2dead13 diff --git a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 index 70a55feed5b1..39487f5cd7d0 100644 --- a/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 +++ b/metadata/md5-cache/sci-biology/vienna-rna-2.1.8 @@ -10,5 +10,5 @@ RDEPEND=dev-lang/perl media-libs/gd doc? ( dev-texlive/texlive-latex ) python? ( REQUIRED_USE=python? ( || ( python_targets_python2_7 ) ) SLOT=0 SRC_URI=http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz -_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 08e17157a6807add7db1f8d01e7e391f toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 +_eclasses_=autotools 1bf086cdd7356f5c9a4acd9727bd2065 autotools-utils 696393cddf6200db17a31641f597b403 desktop b1d22ac8bdd4679ab79c71aca235009d distutils-r1 30044897f9a75ab6414bdb19aa3c07d4 epatch a1bf4756dba418a7238f3be0cb010c54 estack 43ddf5aaffa7a8d0482df54d25a66a1f eutils 6e6c2737b59a4b982de6fb3ecefd87f8 libtool f143db5a74ccd9ca28c1234deffede96 ltprune 2729691420b6deeda2a90b1f1183fb55 multibuild 40fe59465edacd730c644ec2bc197809 multilib b2f01ad412baf81650c23fcf0975fa33 multiprocessing cac3169468f893670dac3e7cb940e045 perl-functions f2e3420aed32cf1abe33b4129b842636 perl-module 71c828c354a4cddced2641dda2695de5 preserve-libs ef207dc62baddfddfd39a164d9797648 python-r1 ce1cd23cfdc1848e8e32743efe34f299 python-utils-r1 12114a2a9aab35b93efc037a196b3234 toolchain-funcs b45201c4e6c096b98e250336954e64b9 unpacker 3cd8bad0d31e525cd26be1bfa4e61631 vcs-clean 2a0f74a496fa2b1552c4f3398258b7bf xdg-utils 14d00d009167652b1fa363e55effe213 _md5_=b2a6486af275e75c6365ab7eeba1e0bd -- cgit v1.2.3