From 21435953e16cda318a82334ddbadb3b5c36d9ea7 Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Wed, 15 Jan 2020 15:51:32 +0000 Subject: gentoo resync : 15.01.2020 --- dev-python/astropy/Manifest | 14 --- dev-python/astropy/astropy-1.2.1.ebuild | 98 ----------------- dev-python/astropy/astropy-1.3.3.ebuild | 97 ----------------- dev-python/astropy/astropy-2.0.1.ebuild | 95 ---------------- .../files/astropy-1.0.4-system-configobj.patch | 14 --- .../astropy/files/astropy-1.0.4-system-six.patch | 12 --- .../files/astropy-1.1.1-mark-kown-failures.patch | 99 ----------------- .../astropy/files/astropy-1.2.1-cfitsio-338.patch | 16 --- .../files/astropy-1.3.3-external-python-pkgs.patch | 119 --------------------- .../files/astropy-1.3.3-mark-known-failures.patch | 84 --------------- dev-python/astropy/files/astropy-ply.py | 58 ---------- dev-python/astropy/metadata.xml | 16 --- 12 files changed, 722 deletions(-) delete mode 100644 dev-python/astropy/Manifest delete mode 100644 dev-python/astropy/astropy-1.2.1.ebuild delete mode 100644 dev-python/astropy/astropy-1.3.3.ebuild delete mode 100644 dev-python/astropy/astropy-2.0.1.ebuild delete mode 100644 dev-python/astropy/files/astropy-1.0.4-system-configobj.patch delete mode 100644 dev-python/astropy/files/astropy-1.0.4-system-six.patch delete mode 100644 dev-python/astropy/files/astropy-1.1.1-mark-kown-failures.patch delete mode 100644 dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch delete mode 100644 dev-python/astropy/files/astropy-1.3.3-external-python-pkgs.patch delete mode 100644 dev-python/astropy/files/astropy-1.3.3-mark-known-failures.patch delete mode 100644 dev-python/astropy/files/astropy-ply.py delete mode 100644 dev-python/astropy/metadata.xml (limited to 'dev-python/astropy') diff --git a/dev-python/astropy/Manifest b/dev-python/astropy/Manifest deleted file mode 100644 index 4341d08d032b..000000000000 --- a/dev-python/astropy/Manifest +++ /dev/null @@ -1,14 +0,0 @@ -AUX 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f9332b828d2204f60a0e032e79fb841235a08ce3be974563fa0818f98d02c95743dc42ec6c8bae5f239c0917b030b073f5a9ee5cbf848682b7d2ca01ef9b5009 SHA512 0677b4f22a9eb7d3334109a639ec14ce904935dc58925d303dc98c27cbac2be7d0e95bd873cc21d3cd92e8e553481d203382c281f91cb7a4e41c27d1ff83aac7 -EBUILD astropy-1.2.1.ebuild 2747 BLAKE2B 0c65a5229e6f1189f26845c05c47f9746b7702863dc2dfd90de202f48b64e99e2e13793fd4bdd5daaa900204d9fce3a1448ad6bb5c5b0f79ed18ab78472a5df6 SHA512 30edd38b6bc8befb71697fece86e038baa42a7373b2e775bb2b318b0093b649292dbc2806443e4936505329d2a8d06bdc3ca6b53b6edf0338b02575a61182b83 -EBUILD astropy-1.3.3.ebuild 2546 BLAKE2B 9786579565d02e95c44029b568767cd9f4298458ed05af9814cb152ad2b05dcf4b66be321d31a238eed7f99b94e750ac5c689475d948ade0e819fadc9f55e6fe SHA512 a6053146ed0ea72c28931ea08b1071ebc9e01ce1a742c32ab5644613de3f45b7db3205aa101227e74272de7d0b39d8ef4b11031b96d7076f0689014904a188c2 -EBUILD astropy-2.0.1.ebuild 2520 BLAKE2B 21c48aa40f351d63bb630b2a5d4a3172a4966fa4401788965254610d355ff9de67d0fb946a40ca2fa21d05fec8961aed0242a55c24d3f8d35d8bd827c6e41447 SHA512 c3492075eb851e96e0379d9af61ecd2017fb3d9823057a9492a70833f2a159494bea44a57df7eb4f83ca56c0f0dbea4c8949ebee47923859051224e2094f0e18 -MISC metadata.xml 573 BLAKE2B 101ff09377b24ffca933b12059f2347b604ce6389420314a049ee16569ba62dad19c88611de4871b55b2fdc5ceef3e57100b52da7160928b3cf511f17e734d16 SHA512 a8054d4eb431348c9840e37a5877c2ce7cd4b73f213c1a24f9d3548dfc63a6756d80ffb9f96f78a053fb4ae2a39a424dbe46257be2e9f892f42ec18ff44fad17 diff --git a/dev-python/astropy/astropy-1.2.1.ebuild b/dev-python/astropy/astropy-1.2.1.ebuild deleted file mode 100644 index e7786c0fe173..000000000000 --- a/dev-python/astropy/astropy-1.2.1.ebuild +++ /dev/null @@ -1,98 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 python3_5 ) - -inherit distutils-r1 xdg-utils - -DESCRIPTION="Core functionality for performing astrophysics with Python" -HOMEPAGE="https://www.astropy.org/" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc test" -RESTRICT="!test? ( test )" - -RDEPEND=" - dev-libs/expat:0= - dev-python/configobj[${PYTHON_USEDEP}] - >=dev-python/numpy-1.10[${PYTHON_USEDEP}] - dev-python/ply[${PYTHON_USEDEP}] - dev-python/six[${PYTHON_USEDEP}] - >=sci-astronomy/erfa-1.2:0= - >=sci-astronomy/wcslib-5:0= - sci-libs/cfitsio:0= - sys-libs/zlib:0=" -DEPEND="${RDEPEND} - >=dev-python/astropy-helpers-1.1[${PYTHON_USEDEP}] - dev-python/cython[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - virtual/pkgconfig - doc? ( - media-gfx/graphviz - $(python_gen_cond_dep 'dev-libs/libxml2[${PYTHON_USEDEP}]' python2_7) - $(python_gen_cond_dep 'dev-python/h5py[${PYTHON_USEDEP}]' python2_7) - $(python_gen_cond_dep 'dev-python/matplotlib[${PYTHON_USEDEP}]' python2_7) - $(python_gen_cond_dep 'dev-python/pytest[${PYTHON_USEDEP}]' python2_7) - $(python_gen_cond_dep 'dev-python/sphinx[${PYTHON_USEDEP}]' python2_7) - $(python_gen_cond_dep 'dev-python/wcsaxes[${PYTHON_USEDEP}]' python2_7) - $(python_gen_cond_dep 'sci-libs/scipy[${PYTHON_USEDEP}]' python2_7) - ) - test? ( - dev-libs/libxml2[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - )" - -REQUIRED_USE="doc? ( || ( $(python_gen_useflags 'python2*') ) )" - -PATCHES=( - "${FILESDIR}/${PN}-1.0.4-system-six.patch" - "${FILESDIR}/${PN}-1.0.4-system-configobj.patch" - "${FILESDIR}/${PN}-1.1.1-mark-kown-failures.patch" - "${FILESDIR}/${PN}-1.2.1-cfitsio-338.patch" -) - -pkg_setup() { - use doc && DISTUTILS_ALL_SUBPHASE_IMPLS=( 'python2*' ) -} - -python_prepare_all() { - export mydistutilsargs="--offline" - export ASTROPY_USE_SYSTEM_PYTEST=True - rm -r ${PN}_helpers || die - cp "${FILESDIR}"/astropy-ply.py astropy/extern/ply.py || die - rm -r cextern/{expat,erfa,cfitsio,wcslib} || die - sed -i -e '/auto_use/s/True/False/' setup.cfg || die - cat >> setup.cfg <<-EOF - [build] - use_system_libraries=1 - EOF - xdg_environment_reset - distutils-r1_python_prepare_all -} - -python_compile_all() { - if use doc; then - python_setup "python2*" - VARTEXFONTS="${T}"/fonts \ - MPLCONFIGDIR="${BUILD_DIR}" \ - PYTHONPATH="${BUILD_DIR}"/lib \ - esetup.py build_sphinx - fi -} - -python_test() { - esetup.py test -} - -python_install_all() { - use doc && local HTML_DOCS=( docs/_build/html/. ) - distutils-r1_python_install_all -} diff --git a/dev-python/astropy/astropy-1.3.3.ebuild b/dev-python/astropy/astropy-1.3.3.ebuild deleted file mode 100644 index 924aeef85f40..000000000000 --- a/dev-python/astropy/astropy-1.3.3.ebuild +++ /dev/null @@ -1,97 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 python3_{5,6} ) - -inherit distutils-r1 xdg-utils - -DESCRIPTION="Core functionality for performing astrophysics with Python" -HOMEPAGE="https://www.astropy.org/" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc test" -RESTRICT="!test? ( test )" - -# ply-3.10 incompatible, keep bundled (bug #622802) -#rdep: dev-python/ply[${PYTHON_USEDEP}] -#prep: cp "${FILESDIR}"/astropy-ply.py astropy/extern/ply.py || die - -RDEPEND=" - dev-libs/expat:0= - dev-python/configobj[${PYTHON_USEDEP}] - >=dev-python/numpy-1.10[${PYTHON_USEDEP}] - dev-python/six[${PYTHON_USEDEP}] - >=sci-astronomy/erfa-1.3:0= - >=sci-astronomy/wcslib-5:0= - >=sci-libs/cfitsio-3.410:0= - sys-libs/zlib:0=" -DEPEND="${RDEPEND} - dev-python/astropy-helpers[${PYTHON_USEDEP}] - dev-python/cython[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - virtual/pkgconfig - doc? ( - media-gfx/graphviz - dev-libs/libxml2[${PYTHON_USEDEP}] - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/jplephem[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/pillow[${PYTHON_USEDEP},jpeg(+)] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pyyaml[${PYTHON_USEDEP}] - dev-python/sphinx-gallery[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - ) - test? ( - dev-libs/libxml2[${PYTHON_USEDEP}] - dev-python/pillow[${PYTHON_USEDEP},jpeg] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pytest-mpl[${PYTHON_USEDEP}] - dev-python/h5py[${PYTHON_USEDEP}] - sci-libs/scipy[${PYTHON_USEDEP}] - )" - -PATCHES=( - "${FILESDIR}"/${PN}-1.3.3-mark-known-failures.patch - "${FILESDIR}"/${PN}-1.3.3-external-python-pkgs.patch -) - -python_prepare_all() { - export mydistutilsargs="--offline" - export ASTROPY_USE_SYSTEM_PYTEST=True - #rm -r ${PN}_helpers || die - rm -r cextern/{expat,erfa,cfitsio,wcslib} || die - sed -i -e '/auto_use/s/True/False/' setup.cfg || die - cat >> setup.cfg <<-EOF - [build] - use_system_libraries=1 - EOF - xdg_environment_reset - distutils-r1_python_prepare_all -} - -python_compile_all() { - if use doc; then - mkdir -p examples - touch examples/README.txt || die - python_setup - VARTEXFONTS="${T}"/fonts \ - MPLCONFIGDIR="${BUILD_DIR}" \ - PYTHONPATH="${BUILD_DIR}"/lib \ - esetup.py build_docs --no-intersphinx - fi -} - -python_test() { - esetup.py test -} - -python_install_all() { - use doc && local HTML_DOCS=( docs/_build/html/. ) - distutils-r1_python_install_all -} diff --git a/dev-python/astropy/astropy-2.0.1.ebuild b/dev-python/astropy/astropy-2.0.1.ebuild deleted file mode 100644 index 4cc6a45fc865..000000000000 --- a/dev-python/astropy/astropy-2.0.1.ebuild +++ /dev/null @@ -1,95 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 python3_{5,6} ) - -inherit distutils-r1 xdg-utils - -MYPV=${PV/_/} -S=${WORKDIR}/${PN}-${MYPV} - -DESCRIPTION="Core functionality for performing astrophysics with Python" -HOMEPAGE="https://www.astropy.org/" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${PN}-${MYPV}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="doc test" -RESTRICT="!test? ( test )" - -RDEPEND=" - dev-libs/expat:0= - dev-python/beautifulsoup:4[${PYTHON_USEDEP}] - dev-python/configobj[${PYTHON_USEDEP}] - dev-python/h5py[${PYTHON_USEDEP}] - dev-python/ipython[${PYTHON_USEDEP}] - >=dev-python/jinja-2.7[${PYTHON_USEDEP}] - dev-python/jplephem[${PYTHON_USEDEP}] - dev-libs/libxml2[${PYTHON_USEDEP}] - dev-python/matplotlib[${PYTHON_USEDEP}] - dev-python/mpmath[${PYTHON_USEDEP}] - >=dev-python/numpy-1.10[${PYTHON_USEDEP}] - dev-python/objgraph[${PYTHON_USEDEP}] - dev-python/pandas[${PYTHON_USEDEP}] - dev-python/pillow[${PYTHON_USEDEP},jpeg(+)] - dev-python/pytz[${PYTHON_USEDEP}] - dev-python/pyyaml[${PYTHON_USEDEP}] - dev-python/six[${PYTHON_USEDEP}] - >=sci-astronomy/erfa-1.3:0= - >=sci-astronomy/wcslib-5:0= - >=sci-libs/cfitsio-3.410:0= - sci-libs/scipy[${PYTHON_USEDEP}] - sci-libs/scikits_image[${PYTHON_USEDEP}] - sys-libs/zlib:0= -" -DEPEND=" - >=dev-python/astropy-helpers-2[${PYTHON_USEDEP}] - >=dev-python/cython-0.21[${PYTHON_USEDEP}] - >=dev-python/jinja-2.7[${PYTHON_USEDEP}] - >=dev-python/numpy-1.10[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - virtual/pkgconfig - doc? ( - ${RDEPEND} - media-gfx/graphviz - dev-python/pytest[${PYTHON_USEDEP}] - >=dev-python/sphinx-1.6[${PYTHON_USEDEP}] - >=dev-python/sphinx-gallery-0.1.9[${PYTHON_USEDEP}] - ) - test? ( - ${RDEPEND} - dev-python/mock[${PYTHON_USEDEP}] - dev-python/pytest[${PYTHON_USEDEP}] - dev-python/pytest-mpl[${PYTHON_USEDEP}] - ) -" - -python_prepare_all() { - export mydistutilsargs="--offline" - export ASTROPY_USE_SYSTEM_PYTEST=True - rm -r ${PN}_helpers || die - rm -r cextern/{expat,erfa,cfitsio,wcslib} || die - sed -i -e '/auto_use/s/True/False/' setup.cfg || die - cat >> setup.cfg <<-EOF - - [build] - use_system_libraries=1 - EOF - xdg_environment_reset - distutils-r1_python_prepare_all -} - -python_compile_all() { - if use doc; then - VARTEXFONTS="${T}"/fonts MPLCONFIGDIR="${T}" PYTHONPATH="${BUILD_DIR}"/lib \ - esetup.py build_docs --no-intersphinx - HTML_DOCS=( docs/_build/html/. ) - fi -} - -python_test() { - esetup.py test -} diff --git a/dev-python/astropy/files/astropy-1.0.4-system-configobj.patch b/dev-python/astropy/files/astropy-1.0.4-system-configobj.patch deleted file mode 100644 index 9578c0d43571..000000000000 --- a/dev-python/astropy/files/astropy-1.0.4-system-configobj.patch +++ /dev/null @@ -1,14 +0,0 @@ -diff -ur astropy-0.4.1/astropy/config/configuration.py astropy-0.4.1.configobj/astropy/config/configuration.py ---- astropy-0.4.1/astropy/config/configuration.py 2014-09-01 22:41:30.066853605 +0200 -+++ astropy-0.4.1.configobj/astropy/config/configuration.py 2014-09-01 22:40:50.793528942 +0200 -@@ -23,7 +23,8 @@ - import types - from warnings import warn - --from ..extern.configobj import configobj, validate -+import configobj -+import validate - from ..utils.exceptions import AstropyWarning, AstropyDeprecationWarning - from ..utils import find_current_module - from ..utils.misc import InheritDocstrings - diff --git a/dev-python/astropy/files/astropy-1.0.4-system-six.patch b/dev-python/astropy/files/astropy-1.0.4-system-six.patch deleted file mode 100644 index 8bfab98124b3..000000000000 --- a/dev-python/astropy/files/astropy-1.0.4-system-six.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff -ur astropy-0.4.1/astropy/extern/six.py astropy-0.4.1.six/astropy/extern/six.py ---- astropy-0.4.1/astropy/extern/six.py 2014-09-01 21:57:56.663393218 +0200 -+++ astropy-0.4.1.six/astropy/extern/six.py 2014-09-01 21:59:02.940933294 +0200 -@@ -13,7 +13,7 @@ - # Update this to prevent Astropy from using its bundled copy of six - # (but only if some other version of at least _SIX_MIN_VERSION can - # be provided) --_SIX_SEARCH_PATH = ['astropy.extern.bundled.six', 'six'] -+_SIX_SEARCH_PATH = ['six', 'astropy.extern.bundled.six'] - - - def _find_module(name, path=None): diff --git a/dev-python/astropy/files/astropy-1.1.1-mark-kown-failures.patch b/dev-python/astropy/files/astropy-1.1.1-mark-kown-failures.patch deleted file mode 100644 index 2e2c82af5416..000000000000 --- a/dev-python/astropy/files/astropy-1.1.1-mark-kown-failures.patch +++ /dev/null @@ -1,99 +0,0 @@ -Author: Ole Streicher -Description: Mark all known test failures as xfail. - These failures have been discussed with upstream. ---- a/astropy/io/fits/tests/test_connect.py -+++ b/astropy/io/fits/tests/test_connect.py -@@ -136,6 +136,8 @@ - # while reading is to check whether col.null is present. For float columns, col.null - # is not initialized - -+# see https://github.com/astropy/astropy/issues/3415 -+ @pytest.mark.xfail() - def test_read_from_fileobj(self, tmpdir): - filename = str(tmpdir.join('test_read_from_fileobj.fits')) - hdu = BinTableHDU(self.data) -@@ -172,6 +174,8 @@ - def setup_method(self, method): - warnings.filterwarnings('always') - -+# see https://github.com/astropy/astropy/issues/3415 -+ @pytest.mark.xfail() - def test_read(self, tmpdir): - filename = str(tmpdir.join('test_read.fits')) - self.hdus.writeto(filename) -@@ -189,6 +193,8 @@ - Table.read(filename, hdu=0) - assert exc.value.args[0] == 'No table found in hdu=0' - -+# see https://github.com/astropy/astropy/issues/3415 -+ @pytest.mark.xfail() - @pytest.mark.parametrize('hdu', [1, 'first']) - def test_read_with_hdu_1(self, tmpdir, hdu): - filename = str(tmpdir.join('test_read_with_hdu_1.fits')) ---- a/astropy/wcs/wcs.py -+++ b/astropy/wcs/wcs.py -@@ -84,6 +84,8 @@ - if six.PY3 or platform.system() == 'Windows': - __doctest_skip__ = ['WCS.all_world2pix'] - -+# see https://github.com/astropy/astropy/issues/3380 -+__doctest_skip__ = ['WCS.all_world2pix'] - - if _wcs is not None: - WCSBase = _wcs._Wcs ---- a/astropy/tests/tests/test_socketblocker.py -+++ b/astropy/tests/tests/test_socketblocker.py -@@ -66,8 +66,8 @@ - def _square(x): - return x ** 2 - -- --@pytest.mark.skipif('not PY3_4 or sys.platform == "win32" or sys.platform.startswith("gnu0")') -+# see https://github.com/astropy/astropy/issues/4193 -+@pytest.mark.skipif(True, reason="Blocks on Debian CI test") - def test_multiprocessing_forkserver(): - """ - Test that using multiprocessing with forkserver works. Perhaps ---- a/astropy/coordinates/tests/test_api_ape5.py -+++ b/astropy/coordinates/tests/test_api_ape5.py -@@ -319,7 +319,8 @@ - # coordinate object, and one that returns a cartesian matrix but does *not* - # require `newobj` or `fk5frame` - this allows optimization of the transform. - -- -+# Temporary mark until scipy/numpy is fully on 3.5 -+@pytest.mark.xfail() - def test_highlevel_api(): - J2001 = time.Time('J2001', scale='utc') - ---- a/astropy/visualization/tests/test_histogram.py -+++ b/astropy/visualization/tests/test_histogram.py -@@ -50,6 +50,8 @@ - assert patches2[0].axes is ax[1] - - -+# see https://github.com/astropy/astropy/issues/4329 -+@pytest.mark.xfail() - @pytest.mark.skipif('not HAS_PLT') - def test_hist_autobin(rseed=0): - rng = np.random.RandomState(rseed) ---- a/astropy/table/tests/test_info.py -+++ b/astropy/table/tests/test_info.py -@@ -6,6 +6,7 @@ - import warnings - import numpy as np - -+from ...tests.helper import pytest - from ...extern import six - from ... import units as u - from ... import time -@@ -225,7 +226,8 @@ - t.info(out=out) - assert out.getvalue().splitlines() == exp - -- -+# see https://github.com/astropy/astropy/issues/4336 -+@pytest.mark.xfail() - def test_ignore_warnings(): - t = table.Table([[np.nan, np.nan]]) - with warnings.catch_warnings(record=True) as warns: diff --git a/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch b/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch deleted file mode 100644 index 9a688d959851..000000000000 --- a/dev-python/astropy/files/astropy-1.2.1-cfitsio-338.patch +++ /dev/null @@ -1,16 +0,0 @@ -Author: Ole Streicher -Description: Make TFORMx check more flexible - The maximal column length in cfitsio changed between version 3370 and 3380. - This patch checks their syntax, without a specific length. -Bug: https://github.com/astropy/astropy/issues/4646 ---- a/astropy/io/fits/tests/test_image.py -+++ b/astropy/io/fits/tests/test_image.py -@@ -1070,7 +1070,7 @@ - hdu.writeto(self.temp('test.fits')) - - with fits.open(self.temp('test.fits')) as hdul: -- assert (hdul['SCI'].data == cube).all() -+ assert np.abs(hdul['SCI'].data - cube).max() < 1./15. - - def test_subtractive_dither_seed(self): - """ diff --git a/dev-python/astropy/files/astropy-1.3.3-external-python-pkgs.patch b/dev-python/astropy/files/astropy-1.3.3-external-python-pkgs.patch deleted file mode 100644 index 5c69704df9b0..000000000000 --- a/dev-python/astropy/files/astropy-1.3.3-external-python-pkgs.patch +++ /dev/null @@ -1,119 +0,0 @@ -Edit: bicatali@gentoo.org, ply-3.10 incompatible, so keep bundled. - -From: Ole Streicher -Date: Thu, 12 Jan 2017 11:37:47 +0100 -Subject: Use external python modules instead of convenience copies - ---- - astropy/coordinates/angle_utilities.py | 2 +- - astropy/extern/configobj.py | 5 ++++- - astropy/extern/six.py | 2 +- - astropy/table/jsviewer.py | 14 ++++++++------ - astropy/table/tests/test_jsviewer.py | 6 +++--- - astropy/tests/helper.py | 2 +- - astropy/units/format/cds.py | 4 ++-- - astropy/units/format/generic.py | 4 ++-- - astropy/units/format/ogip.py | 4 ++-- - 9 files changed, 24 insertions(+), 19 deletions(-) - -diff --git a/astropy/extern/configobj.py b/astropy/extern/configobj.py -index 8d1bd8c..e3bb0e0 100644 ---- a/astropy/extern/configobj.py -+++ b/astropy/extern/configobj.py -@@ -7,5 +7,8 @@ currently installed version of python. - Also, this should actually never actually show up as a docstring, because - it should get overwritten by the appropriate configobj docstring. - """ -+from __future__ import absolute_import -+import validate -+import configobj -+ - --from .configobj import configobj, validate, __doc__ -diff --git a/astropy/extern/six.py b/astropy/extern/six.py -index 5398fc0..fb3a30c 100644 ---- a/astropy/extern/six.py -+++ b/astropy/extern/six.py -@@ -13,7 +13,7 @@ _SIX_MIN_VERSION = StrictVersion('1.10.0') - # Update this to prevent Astropy from using its bundled copy of six - # (but only if some other version of at least _SIX_MIN_VERSION can - # be provided) --_SIX_SEARCH_PATH = ['astropy.extern.bundled.six', 'six'] -+_SIX_SEARCH_PATH = ['six'] - - - def _find_module(name, path=None): -diff --git a/astropy/table/jsviewer.py b/astropy/table/jsviewer.py -index d0cc380..9f686ea 100644 ---- a/astropy/table/jsviewer.py -+++ b/astropy/table/jsviewer.py -@@ -30,8 +30,8 @@ class Conf(_config.ConfigNamespace): - conf = Conf() - - --EXTERN_JS_DIR = abspath(join(dirname(extern.__file__), 'js')) --EXTERN_CSS_DIR = abspath(join(dirname(extern.__file__), 'css')) -+EXTERN_JS_DIR = '/usr/share/javascript' -+EXTERN_CSS_DIR = EXTERN_JS_DIR - - _SORTING_SCRIPT_PART_1 = """ - var astropy_sort_num = function(a, b) {{ -@@ -134,22 +134,24 @@ class JSViewer(object): - @property - def jquery_urls(self): - if self._use_local_files: -- return ['file://' + join(EXTERN_JS_DIR, 'jquery-3.1.1.min.js'), -- 'file://' + join(EXTERN_JS_DIR, 'jquery.dataTables.min.js')] -+ return ['file://' + join(EXTERN_JS_DIR, 'jquery', 'jquery.min.js'), -+ 'file://' + join(EXTERN_JS_DIR, 'jquery-datatables', -+ 'jquery.dataTables.min.js')] - else: - return [conf.jquery_url, conf.datatables_url] - - @property - def css_urls(self): - if self._use_local_files: -- return ['file://' + join(EXTERN_CSS_DIR, -+ return ['file://' + join(EXTERN_CSS_DIR, 'jquery-datatables', 'css', - 'jquery.dataTables.css')] - else: - return conf.css_urls - - def _jstable_file(self): - if self._use_local_files: -- return 'file://' + join(EXTERN_JS_DIR, 'jquery.dataTables.min') -+ return 'file://' + join(EXTERN_JS_DIR, 'jquery-datatables', -+ 'jquery.dataTables.min') - else: - return conf.datatables_url[:-3] - -diff --git a/astropy/table/tests/test_jsviewer.py b/astropy/table/tests/test_jsviewer.py -index 6a8b033..5018bd4 100644 ---- a/astropy/table/tests/test_jsviewer.py -+++ b/astropy/table/tests/test_jsviewer.py -@@ -145,9 +145,9 @@ def test_write_jsviewer_local(tmpdir): - table_id='test', - length='50', - display_length='10, 25, 50, 100, 500, 1000', -- datatables_css_url='file://' + join(EXTERN_DIR, 'css', 'jquery.dataTables.css'), -- datatables_js_url='file://' + join(EXTERN_DIR, 'js', 'jquery.dataTables.min.js'), -- jquery_url='file://' + join(EXTERN_DIR, 'js', 'jquery-3.1.1.min.js') -+ datatables_css_url='file:///usr/share/javascript/jquery-datatables/css/jquery.dataTables.css', -+ datatables_js_url='file:///usr/share/javascript/jquery-datatables/jquery.dataTables.min.js', -+ jquery_url='file:///usr/share/javascript/jquery/jquery.min.js' - ) - with open(tmpfile) as f: - assert f.read().strip() == ref.strip() -diff --git a/astropy/tests/helper.py b/astropy/tests/helper.py -index 9e88d1f..94bd40a 100644 ---- a/astropy/tests/helper.py -+++ b/astropy/tests/helper.py -@@ -40,7 +40,7 @@ __all__ = ['raises', 'enable_deprecations_as_exceptions', 'remote_data', - 'pickle_protocol', 'generic_recursive_equality_test'] - - --if os.environ.get('ASTROPY_USE_SYSTEM_PYTEST') or '_pytest' in sys.modules: -+if True: - import pytest - - else: diff --git a/dev-python/astropy/files/astropy-1.3.3-mark-known-failures.patch b/dev-python/astropy/files/astropy-1.3.3-mark-known-failures.patch deleted file mode 100644 index 1a30bc1d10ab..000000000000 --- a/dev-python/astropy/files/astropy-1.3.3-mark-known-failures.patch +++ /dev/null @@ -1,84 +0,0 @@ -From: Ole Streicher -Date: Tue, 13 Dec 2016 09:41:39 +0100 -Subject: Mark all known test failures as xfail. These failures have been - discussed with upstream. - ---- - astropy/table/tests/test_info.py | 4 +++- - astropy/tests/tests/test_socketblocker.py | 4 ++-- - astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py | 4 ++++ - astropy/vo/samp/tests/test_standard_profile.py | 2 ++ - 4 files changed, 11 insertions(+), 3 deletions(-) - -diff --git a/astropy/table/tests/test_info.py b/astropy/table/tests/test_info.py -index 2bbcc7a..50fbdb4 100644 ---- a/astropy/table/tests/test_info.py -+++ b/astropy/table/tests/test_info.py -@@ -8,6 +8,7 @@ from collections import OrderedDict - - import numpy as np - -+from ...tests.helper import pytest - from ...extern import six - from ...extern.six.moves import cStringIO as StringIO - from ... import units as u -@@ -229,7 +230,8 @@ def test_class_attribute(): - t.info(out=out) - assert out.getvalue().splitlines() == exp - -- -+# see https://github.com/astropy/astropy/issues/4336 -+@pytest.mark.xfail() - def test_ignore_warnings(): - t = table.Table([[np.nan, np.nan]]) - with warnings.catch_warnings(record=True) as warns: -diff --git a/astropy/tests/tests/test_socketblocker.py b/astropy/tests/tests/test_socketblocker.py -index c362fa5..783defe 100644 ---- a/astropy/tests/tests/test_socketblocker.py -+++ b/astropy/tests/tests/test_socketblocker.py -@@ -66,8 +66,8 @@ PY3_4 = sys.version_info[:2] >= (3, 4) - def _square(x): - return x ** 2 - -- --@pytest.mark.skipif('not PY3_4 or sys.platform == "win32" or sys.platform.startswith("gnu0")') -+# see https://github.com/astropy/astropy/issues/4193 -+@pytest.mark.skipif(True, reason="Blocks on Debian CI test") - def test_multiprocessing_forkserver(): - """ - Test that using multiprocessing with forkserver works. Perhaps -diff --git a/astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py b/astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py -index 53436dd..4c710e7 100644 ---- a/astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py -+++ b/astropy/visualization/wcsaxes/tests/test_display_world_coordinates.py -@@ -3,6 +3,8 @@ from ..core import WCSAxes - import matplotlib.pyplot as plt - from matplotlib.backend_bases import KeyEvent - -+import pytest -+ - from ....wcs import WCS - from ....extern import six - from ....coordinates import FK5 -@@ -93,6 +95,8 @@ class TestDisplayWorldCoordinate(BaseImageTests): - - assert string_world5 == six.u('267.652 -28\xb046\'23" (world, overlay 3)') - -+ # See https://github.com/astropy/astropy/issues/5601 -+ @pytest.mark.xfail() - def test_cube_coords(self, tmpdir): - wcs = WCS(self.cube_header) - -diff --git a/astropy/vo/samp/tests/test_standard_profile.py b/astropy/vo/samp/tests/test_standard_profile.py -index 325ac96..ac25e55 100644 ---- a/astropy/vo/samp/tests/test_standard_profile.py -+++ b/astropy/vo/samp/tests/test_standard_profile.py -@@ -62,6 +62,8 @@ class TestStandardProfile(object): - - self.hub.stop() - -+ # see https://github.com/astropy/astropy/issues/5460 -+ @pytest.mark.skipif(True, reason="Setup fails due to SSL problems") - def test_main(self): - - self.client1_id = self.client1.get_public_id() diff --git a/dev-python/astropy/files/astropy-ply.py b/dev-python/astropy/files/astropy-ply.py deleted file mode 100644 index 19eb104c4ca0..000000000000 --- a/dev-python/astropy/files/astropy-ply.py +++ /dev/null @@ -1,58 +0,0 @@ -# Licensed under a 3-clause BSD style license - see LICENSE.rst - -""" -Handle loading ply package from system or from the bundled copy -""" - -import imp -from distutils.version import StrictVersion - - -def _find_module(name, path=None): - """ - Alternative to `imp.find_module` that can also search in subpackages. - """ - - parts = name.split('.') - - for part in parts: - if path is not None: - path = [path] - - fh, path, descr = imp.find_module(part, path) - - return fh, path, descr - -_PLY_MIN_VERSION = StrictVersion('3.4') - -# Update this to prevent Astropy from using its bundled copy of ply -# (but only if some other version of at least _PLY_MIN_VERSION can -# be provided) -_PLY_SEARCH_PATH = ['ply'] - - -for mod_name in _PLY_SEARCH_PATH: - try: - mod_info = _find_module(mod_name) - #mod_lex_info = _find_module(mod_name + '.lex') - except ImportError: - continue - - mod = imp.load_module(__name__, *mod_info) - #mod_lex = imp.load_module(__name__ + '.lex', *mod_lex_info) - - try: - # if StrictVersion(mod_lex.__version__) >= _PLY_MIN_VERSION: - # break - break - except (AttributeError, ValueError): - # Attribute error if the ply module isn't what it should be and doesn't - # have a .__version__; ValueError if the version string exists but is - # somehow bogus/unparseable - continue -else: - raise ImportError( - "Astropy requires the 'ply' module of minimum version {0}; " - "normally this is bundled with the astropy package so if you get " - "this warning consult the packager of your Astropy " - "distribution.".format(_PLY_MIN_VERSION)) diff --git a/dev-python/astropy/metadata.xml b/dev-python/astropy/metadata.xml deleted file mode 100644 index 85615ff002ce..000000000000 --- a/dev-python/astropy/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ - - - - - sci-astronomy@gentoo.org - Gentoo Astronomy Project - - - Astropy is a community-driven package intended to contain much of - the core functionality and some common tools needed for performing - astronomy and astrophysics with Python. - - - astropy - - -- cgit v1.2.3