From 46eedbedafdb0040c37884982d4c775ce277fb7b Mon Sep 17 00:00:00 2001 From: V3n3RiX Date: Wed, 20 Oct 2021 10:22:14 +0100 Subject: gentoo resync : 20.10.2021 --- dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild | 93 ----------------------------- dev-perl/Bio-Das/Bio-Das-1.170.0-r3.ebuild | 94 ++++++++++++++++++++++++++++++ dev-perl/Bio-Das/Manifest | 2 +- 3 files changed, 95 insertions(+), 94 deletions(-) delete mode 100644 dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild create mode 100644 dev-perl/Bio-Das/Bio-Das-1.170.0-r3.ebuild (limited to 'dev-perl/Bio-Das') diff --git a/dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild b/dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild deleted file mode 100644 index fbd25fa1e003..000000000000 --- a/dev-perl/Bio-Das/Bio-Das-1.170.0-r2.ebuild +++ /dev/null @@ -1,93 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -DIST_AUTHOR=LDS -DIST_VERSION=1.17 -DIST_EXAMPLES=("eg/*") -inherit perl-module - -DESCRIPTION="Interface to Distributed Annotation System" - -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND=">=virtual/perl-IO-Compress-1.0 - sci-biology/bioperl - >=dev-perl/HTML-Parser-3 - >=dev-perl/libwww-perl-5 - >=virtual/perl-MIME-Base64-2.12" -RDEPEND="${DEPEND}" - -optdep_notice() { - local i - elog "This package has several modules which may require additional dependencies" - elog "to use. However, it is up to you to install them separately if you need this" - elog "optional functionality:" - elog - i="$(if has_version 'dev-perl/CGI'; then echo '[I]'; else echo '[ ]'; fi)" - elog " $i dev-perl/CGI" - elog " - Running a reference DAS server driven by an AGP File via" - elog " Bio::Das::AGPServer::Daemon" - - if use test; then - elog - elog "This module will perform additional tests if these dependencies are" - elog "pre-installed" - fi -} -src_test() { - local MODULES=( - "Bio::Das ${DIST_VERSION}" - "Bio::Das::AGPServer::Config 1.0" - "Bio::Das::AGPServer::Parser" - "Bio::Das::AGPServer::SQLStorage" - "Bio::Das::AGPServer::SQLStorage::CSV::DB" - "Bio::Das::AGPServer::SQLStorage::MySQL::DB" - "Bio::Das::DSN" - "Bio::Das::Feature 0.91" - "Bio::Das::FeatureIterator 0.01" - "Bio::Das::HTTP::Fetch 1.11" - "Bio::Das::Map 1.01" - "Bio::Das::Request" - "Bio::Das::Request::Dnas" - "Bio::Das::Request::Dsn" - "Bio::Das::Request::Entry_points" - "Bio::Das::Request::Feature2Segments" - "Bio::Das::Request::Features" - "Bio::Das::Request::Sequences" - "Bio::Das::Request::Stylesheet" - "Bio::Das::Request::Types" - "Bio::Das::Segment 0.91" - "Bio::Das::Stylesheet 1.00" - "Bio::Das::Type" - "Bio::Das::TypeHandler" - "Bio::Das::Util 0.01" - ) - has_version dev-perl/CGI && MODULES+=( - "Bio::Das::AGPServer::Daemon" - ) - local failed=() - for dep in "${MODULES[@]}"; do - ebegin "Compile testing ${dep}" - perl -Mblib="${S}" -M"${dep} ()" -e1 - eend $? || failed+=( "$dep" ) - done - if [[ ${failed[@]} ]]; then - echo - eerror "One or more modules failed compile:"; - for dep in "${failed[@]}"; do - eerror " ${dep}" - done - die "Failing due to module compilation errors"; - fi - if has "network" ${DIST_TEST_OVERRIDE:-${DIST_TEST:-do parallel}}; then - perl-module_src_test - else - ewarn "Functional parts of these tests require network access" - ewarn "For details, see:" - ewarn "https://wiki.gentoo.org/wiki/Project:Perl/maint-notes/dev-perl/Bio-Das" - fi -} diff --git a/dev-perl/Bio-Das/Bio-Das-1.170.0-r3.ebuild b/dev-perl/Bio-Das/Bio-Das-1.170.0-r3.ebuild new file mode 100644 index 000000000000..b58408fc8d75 --- /dev/null +++ b/dev-perl/Bio-Das/Bio-Das-1.170.0-r3.ebuild @@ -0,0 +1,94 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +DIST_AUTHOR=LDS +DIST_VERSION=1.17 +DIST_EXAMPLES=("eg/*") +inherit perl-module + +DESCRIPTION="Interface to Distributed Annotation System" + +SLOT="0" +KEYWORDS="~amd64 ~x86" + +RDEPEND=">=virtual/perl-IO-Compress-1.0 + sci-biology/bioperl + >=dev-perl/HTML-Parser-3 + >=dev-perl/libwww-perl-5 + >=virtual/perl-MIME-Base64-2.12" +BDEPEND="${RDEPEND} +" + +optdep_notice() { + local i + elog "This package has several modules which may require additional dependencies" + elog "to use. However, it is up to you to install them separately if you need this" + elog "optional functionality:" + elog + i="$(if has_version 'dev-perl/CGI'; then echo '[I]'; else echo '[ ]'; fi)" + elog " $i dev-perl/CGI" + elog " - Running a reference DAS server driven by an AGP File via" + elog " Bio::Das::AGPServer::Daemon" + + if use test; then + elog + elog "This module will perform additional tests if these dependencies are" + elog "pre-installed" + fi +} + +src_test() { + local MODULES=( + "Bio::Das ${DIST_VERSION}" + "Bio::Das::AGPServer::Config 1.0" + "Bio::Das::AGPServer::Parser" + "Bio::Das::AGPServer::SQLStorage" + "Bio::Das::AGPServer::SQLStorage::CSV::DB" + "Bio::Das::AGPServer::SQLStorage::MySQL::DB" + "Bio::Das::DSN" + "Bio::Das::Feature 0.91" + "Bio::Das::FeatureIterator 0.01" + "Bio::Das::HTTP::Fetch 1.11" + "Bio::Das::Map 1.01" + "Bio::Das::Request" + "Bio::Das::Request::Dnas" + "Bio::Das::Request::Dsn" + "Bio::Das::Request::Entry_points" + "Bio::Das::Request::Feature2Segments" + "Bio::Das::Request::Features" + "Bio::Das::Request::Sequences" + "Bio::Das::Request::Stylesheet" + "Bio::Das::Request::Types" + "Bio::Das::Segment 0.91" + "Bio::Das::Stylesheet 1.00" + "Bio::Das::Type" + "Bio::Das::TypeHandler" + "Bio::Das::Util 0.01" + ) + has_version dev-perl/CGI && MODULES+=( + "Bio::Das::AGPServer::Daemon" + ) + local failed=() + for dep in "${MODULES[@]}"; do + ebegin "Compile testing ${dep}" + perl -Mblib="${S}" -M"${dep} ()" -e1 + eend $? || failed+=( "$dep" ) + done + if [[ ${failed[@]} ]]; then + echo + eerror "One or more modules failed compile:"; + for dep in "${failed[@]}"; do + eerror " ${dep}" + done + die "Failing due to module compilation errors"; + fi + if has "network" ${DIST_TEST_OVERRIDE:-${DIST_TEST:-do parallel}}; then + perl-module_src_test + else + ewarn "Functional parts of these tests require network access" + ewarn "For details, see:" + ewarn "https://wiki.gentoo.org/wiki/Project:Perl/maint-notes/dev-perl/Bio-Das" + fi +} diff --git a/dev-perl/Bio-Das/Manifest b/dev-perl/Bio-Das/Manifest index 13ff854ccc1d..a9c62a6782c5 100644 --- a/dev-perl/Bio-Das/Manifest +++ b/dev-perl/Bio-Das/Manifest @@ -1,3 +1,3 @@ DIST Bio-Das-1.17.tar.gz 105270 BLAKE2B 0203891fe6f4a0847040f43817d9e0a2eb12dd76eebbab4616f2d9a16c35aa6fa3632071e66a135a49e2a308c30ec971eefabb11371e0abfbe6293fffb4a7b55 SHA512 c44d3571f4f4c777d8315db19cf704cc5ff4d48a8edae8b9a43f7d47df709bee476d810ce1e96bec5ccf44b7cf3373f79b892c0a1d17715f19ffdff81558292e -EBUILD Bio-Das-1.170.0-r2.ebuild 2557 BLAKE2B 0348a208fea7df69883a3e701e67026c397e60bd88f817cbc5aca01ddd6e96f69a9689b4a4b0ee925437e607c8ce99535840869ffcd2ab43de89a90ab4926bae SHA512 93a97d39620eb67fa9cb1d1f86a65c52a86640440ac0d4de3d397f225e9af243d2b60b4a313c4252a280d3ca54e893225bbae835461fb70c41e3fb894b6bcdae +EBUILD Bio-Das-1.170.0-r3.ebuild 2550 BLAKE2B 44bd6c59d60cd7f6418f0c97c155e3b0a95a1c818d2d6688c9520d5b4f6f6015fbd76a66b5f2c6608e4772838ccfa47b6cbbe4f7e914c271bd73c25b162c6194 SHA512 9d06312a16cf42ba49936f22c31ccf7202dc12f78a11e52adc7adf11ffc87f1f627aa1bb9366d7ee04e4ad9be3b0b029feabd42d8ea842b818b4f0e975d55094 MISC metadata.xml 2287 BLAKE2B 0ff4308bfe2880b98103aee62f882d811970c217935cfcf957ed92287aed1f0320a62c6280f1d7b8f9d45bb0ef45ab252402244da60b484c1239f12cabe882ac SHA512 b76f420f6fbeff6aea5804b8310be18c2121f80724c1cd805f633292cdeba7bc49c107479bafc95d7cabbac80f8da9d21712b5b59d02cd5e7b0b4bba4cf2722e -- cgit v1.2.3