From 7748146936014bb364c51e2547982e9f59a5f31a Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@koprulu.sector>
Date: Mon, 3 Oct 2022 01:13:47 +0100
Subject: gentoo auto-resync : 03:10:2022 - 01:13:47

---
 dev-perl/Bio-Das/Bio-Das-1.170.0-r4.ebuild | 95 ++++++++++++++++++++++++++++++
 1 file changed, 95 insertions(+)
 create mode 100644 dev-perl/Bio-Das/Bio-Das-1.170.0-r4.ebuild

(limited to 'dev-perl/Bio-Das/Bio-Das-1.170.0-r4.ebuild')

diff --git a/dev-perl/Bio-Das/Bio-Das-1.170.0-r4.ebuild b/dev-perl/Bio-Das/Bio-Das-1.170.0-r4.ebuild
new file mode 100644
index 000000000000..597c122b8a01
--- /dev/null
+++ b/dev-perl/Bio-Das/Bio-Das-1.170.0-r4.ebuild
@@ -0,0 +1,95 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DIST_AUTHOR=LDS
+DIST_VERSION=1.17
+DIST_EXAMPLES=("eg/*")
+inherit perl-module
+
+DESCRIPTION="Interface to Distributed Annotation System"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+LICENSE="coldspringharbor"
+
+RDEPEND=">=virtual/perl-IO-Compress-1.0
+	sci-biology/bioperl
+	>=dev-perl/HTML-Parser-3
+	>=dev-perl/libwww-perl-5
+	>=virtual/perl-MIME-Base64-2.12"
+BDEPEND="${RDEPEND}
+"
+
+optdep_notice() {
+	local i
+	elog "This package has several modules which may require additional dependencies"
+	elog "to use. However, it is up to you to install them separately if you need this"
+	elog "optional functionality:"
+	elog
+	i="$(if has_version 'dev-perl/CGI'; then echo '[I]'; else echo '[ ]'; fi)"
+	elog " $i dev-perl/CGI"
+	elog "     - Running a reference DAS server driven by an AGP File via"
+	elog "       Bio::Das::AGPServer::Daemon"
+
+	if use test; then
+		elog
+		elog "This module will perform additional tests if these dependencies are"
+		elog "pre-installed"
+	fi
+}
+
+src_test() {
+	local MODULES=(
+		"Bio::Das ${DIST_VERSION}"
+		"Bio::Das::AGPServer::Config 1.0"
+		"Bio::Das::AGPServer::Parser"
+		"Bio::Das::AGPServer::SQLStorage"
+		"Bio::Das::AGPServer::SQLStorage::CSV::DB"
+		"Bio::Das::AGPServer::SQLStorage::MySQL::DB"
+		"Bio::Das::DSN"
+		"Bio::Das::Feature 0.91"
+		"Bio::Das::FeatureIterator 0.01"
+		"Bio::Das::HTTP::Fetch 1.11"
+		"Bio::Das::Map 1.01"
+		"Bio::Das::Request"
+		"Bio::Das::Request::Dnas"
+		"Bio::Das::Request::Dsn"
+		"Bio::Das::Request::Entry_points"
+		"Bio::Das::Request::Feature2Segments"
+		"Bio::Das::Request::Features"
+		"Bio::Das::Request::Sequences"
+		"Bio::Das::Request::Stylesheet"
+		"Bio::Das::Request::Types"
+		"Bio::Das::Segment 0.91"
+		"Bio::Das::Stylesheet 1.00"
+		"Bio::Das::Type"
+		"Bio::Das::TypeHandler"
+		"Bio::Das::Util 0.01"
+	)
+	has_version dev-perl/CGI && MODULES+=(
+		"Bio::Das::AGPServer::Daemon"
+	)
+	local failed=()
+	for dep in "${MODULES[@]}"; do
+		ebegin "Compile testing ${dep}"
+			perl -Mblib="${S}" -M"${dep} ()" -e1
+		eend $? || failed+=( "$dep" )
+	done
+	if [[ ${failed[@]} ]]; then
+		echo
+		eerror "One or more modules failed compile:";
+		for dep in "${failed[@]}"; do
+			eerror "  ${dep}"
+		done
+		die "Failing due to module compilation errors";
+	fi
+	if has "network" ${DIST_TEST_OVERRIDE:-${DIST_TEST:-do parallel}}; then
+		perl-module_src_test
+	else
+		ewarn "Functional parts of these tests require network access"
+		ewarn "For details, see:"
+		ewarn "https://wiki.gentoo.org/wiki/Project:Perl/maint-notes/dev-perl/Bio-Das"
+	fi
+}
-- 
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