From 05b8b0e0af1d72e51a3ee61522941bf7605cd01c Mon Sep 17 00:00:00 2001
From: V3n3RiX <venerix@redcorelinux.org>
Date: Sat, 4 Jul 2020 14:05:23 +0100
Subject: gentoo resync : 04.07.2020

---
 dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild | 47 +++++++++++++++++++++++++
 1 file changed, 47 insertions(+)
 create mode 100644 dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild

(limited to 'dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild')

diff --git a/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild
new file mode 100644
index 000000000000..dcae1156e881
--- /dev/null
+++ b/dev-perl/Bio-DB-HTS/Bio-DB-HTS-3.10.0-r1.ebuild
@@ -0,0 +1,47 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DIST_AUTHOR=AVULLO
+DIST_VERSION=3.01
+
+inherit perl-module
+
+DESCRIPTION="Perl bindings for sci-libs/htslib"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+
+RESTRICT="!test? ( test )"
+
+RDEPEND="
+	sci-biology/bioperl
+	sci-libs/htslib:=
+"
+DEPEND="
+	dev-perl/Module-Build
+	sci-libs/htslib:=
+"
+BDEPEND="${RDEPEND}
+	dev-perl/Module-Build
+	test? ( dev-perl/Test-LeakTrace )"
+
+PATCHES=(
+	"${FILESDIR}/2.11-build_env_ldflags.patch"
+	"${FILESDIR}/2.11-build_split_htslib_opts.patch"
+)
+
+src_configure() {
+	local myconf="--htslib-includedir=${EPREFIX}/usr/include/htslib --htslib-libdir=${EPREFIX}/usr/$(get_libdir)"
+	unset LD
+	if [[ -n "${CCLD}" ]]; then
+		export LD="${CCLD}"
+	fi
+	perl-module_src_configure
+}
+src_compile() {
+	./Build --config optimize="${CFLAGS}" build || die
+}
-- 
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