diff options
Diffstat (limited to 'sys-cluster/openmpi')
-rw-r--r-- | sys-cluster/openmpi/Manifest | 11 | ||||
-rw-r--r-- | sys-cluster/openmpi/files/openmpi-4.1.6-incompatible-pointers.patch | 181 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-4.1.4-r1.ebuild | 188 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-4.1.5.ebuild | 166 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-4.1.6.ebuild | 18 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-5.0.3.ebuild | 141 | ||||
-rw-r--r-- | sys-cluster/openmpi/openmpi-5.0.5.ebuild | 142 |
7 files changed, 486 insertions, 361 deletions
diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest index 14c587367a7e..9bee98e4b3f7 100644 --- a/sys-cluster/openmpi/Manifest +++ b/sys-cluster/openmpi/Manifest @@ -1,7 +1,8 @@ -DIST openmpi-4.1.4.tar.bz2 10042839 BLAKE2B b020e3530ae5dde7b144e7c33b1a3f26f622526a4b48a97a0956fc6f49bbf9dfd5be9ebeeaf3bdc5168a307507408ba5dd8e2a537148821e1d476678177dc5d6 SHA512 c70a92c9b16b8c76a871183f9b180d60861186e64140da897d206d53bc06213f31ea93b31734645f580f4bf28dda5605d85dbce2417e4596955384d961bed653 -DIST openmpi-4.1.5.tar.bz2 10045426 BLAKE2B 135a8373ed6173b7a94def18e3b964c6b6050c909382e0dbb1898a6d261ae428931358121ef6d325d303f4f510017a94970f7c66b280a5fc460365821f36dece SHA512 7a2188684ed7542fe42e1717ae72cb859b4f3d6f722c9d3ba04bfed6c2178b3e7da3a536629d312c23571fed4d9b2ca5e20e85898ae5144e9332bd898e6e1cc6 +AUX openmpi-4.1.6-incompatible-pointers.patch 8095 BLAKE2B c095a4c0c3fba74a8c1f111b5983b77811ce98d5b36dc74e1f1f8de97df4037ef62716acacf35fe1c832348a6dbedd15d0069a6a64e713caf0ddafa36bc491d6 SHA512 8e8d3027262605189b4a54d66ca8293651aecaf88432e038c178b66ee2f8f0e6d4b57410ad2b3e9cf23af2002ba83e972c799de8f3b0e3748b9c5badc86ab5b8 DIST openmpi-4.1.6.tar.bz2 10017002 BLAKE2B 4f119e1ed9b8787f0f860295ab1721fe2fd5300b8e182230a9eba3a864680b02bbd30618cc6d798a693a121626fc0ad5f447144d9ba91becb734f1a530d7a23a SHA512 0ef3240f9c436fb19b67e836cac376eafeb7825d12de3387dad04329dee9f182799d17d785ea23eba763810f479015bb5230593c28950b616b2f0aa1c0a81e71 -EBUILD openmpi-4.1.4-r1.ebuild 5763 BLAKE2B 7e227f94d01dc4fa76b1b082268f875618d3f7c20b90b37ee19bb52c5452e3767f68be3d90becdee033dea8ecb09f15996bb75ec3825ae9ac35958beb01512ae SHA512 720732ec40127fd1dacd080349443041c46066e8d88feb95d1059f83f7757b55598057a0fae15cf7dac8f83fa4c0c88be53e1e93544d1dd1b6b39045fa5a2357 -EBUILD openmpi-4.1.5.ebuild 5068 BLAKE2B faf4e7fad6741faf90d8fbd98df363a2c25d804819998d1cd6c8743216c54b376bb28cef66a0f2a2d4d24f9b4207cc7ceaba4c9d73fba4b22357b472dbdbf97e SHA512 96b5874bdfc7bb267f04bb29c1b20b819504efc70e3d207c3a53a160f191c40de86ea655aa6dcf2036259ab4917c4366b1c9944089b0ae8b25533f91a41cb6f5 -EBUILD openmpi-4.1.6.ebuild 5222 BLAKE2B dee61adb903fd1f752edf4c97ff5cc5cba5d15d9ff1415f1a9ded8200175d80a35276c6eec461dc2987294127ea42e4f6ef89b76e2c1a0cdb5b966ada77bd0a8 SHA512 c9a36e15a3d3ef00a2753ae1f0cb27894aa709dfebb1cde3d06a34053982aeb362c8057438052e9d76392f12cbee9c9f30182c5fc709f1903fb0f31a33511d48 +DIST openmpi-5.0.3.tar.bz2 29761888 BLAKE2B a084813f3dada12bbe77dcc6ef0ec0454980779f97ccb46f37f3d7df3bf7299e6484ec3427c2ca784e70876f62dc061a13cb7f08348e3d649e27f2bece9a09ac SHA512 60e8f6dcd6b1531ce8164e02f40be9a364ab484166a2a7b13bdff115a508f0596e97ad0a4204a47799ae608ba484a7ba9503042bddffe675f09ce22071b0b4a9 +DIST openmpi-5.0.5.tar.bz2 30000495 BLAKE2B 740e5dbc7e54b8f4eac4fa2c40fb5a0ccfba201dff15ccc84899f28dfad0147078ef6c2b0585615c93fc6edb70b665b3f7a9adea5e5e53a7563ae4c7a6ccbada SHA512 d0a137ebdeb578f0457113c6dd0f84d407c88d8f8844e6796114c8026d7391ebfb29d105f16289338eb3ac653ae9d3c0bdc4aa651402444b2ca91c1c447dc409 +EBUILD openmpi-4.1.6.ebuild 5658 BLAKE2B d64baad95956f2ec48c72905706368e9950fe329ac6b15867723039cb035d9dad3199e3887072d669602b872c29e0e04abd2216f81656ea69de5c40e2442fa93 SHA512 b5c8de17bc7c4221c0f54272e0d22aed2d92f9ac0815df1982da6508cde46633b409b8d151aa9b4b35e9cbb540131b355ff7a228cf077889670ba325549fad74 +EBUILD openmpi-5.0.3.ebuild 3713 BLAKE2B 1fd6f4117e83a4469b1912469106960c0e9ed77a9050d716ebdfed67786c5d91428bdac46e2f2783ada2cfcab4f32e3918e87fe808f05b875844b1c44a8eab5c SHA512 6ec4da5adb735308e8a8f91ec2cad86c90a8aa600892cb5f8674e558fb5229554a9173ad9bf2ea241c2658254d67cc13b79dcfcc3f92f8038a30c5327e6cc8b4 +EBUILD openmpi-5.0.5.ebuild 3752 BLAKE2B cd64c69fa2af87e8fe95ffe00171446ede195a590cbbe6211dc522fc2ddc9be4250e43009f09d2f91b2edc1659f5c9ec2d876df2200bfdd264267e60f2568bd8 SHA512 59d13b631f6c5cda5648cc0e53c834827643accd767001e1aded8b01708e2d76f1ab484c9ee66040cebbd1d2471215a14c1bf01c10c1688297bc408f0500f808 MISC metadata.xml 619 BLAKE2B e1073cdab4b3b0013354a95a53354f1040edbde8cb0f864a28ca1a9e9e7f6974e2db4a9a885c8616cfba41b7b472af4168d92ad3b5cd9e051598db1a4d4d2889 SHA512 b76a5bd4fdbdc47c21b06681a8365f5d0baf7b121a88146b87a4a609d01b9008aeae070130c86be89586bfeff73b325bda4b4fa83dc150f3c5865e5d0f422995 diff --git a/sys-cluster/openmpi/files/openmpi-4.1.6-incompatible-pointers.patch b/sys-cluster/openmpi/files/openmpi-4.1.6-incompatible-pointers.patch new file mode 100644 index 000000000000..9f9ae4008ad6 --- /dev/null +++ b/sys-cluster/openmpi/files/openmpi-4.1.6-incompatible-pointers.patch @@ -0,0 +1,181 @@ +--- a/ompi/mca/io/romio321/romio/adio/common/ad_coll_exch_new.c ++++ b/ompi/mca/io/romio321/romio/adio/common/ad_coll_exch_new.c +@@ -154,7 +154,7 @@ void ADIOI_Exch_file_views(int myrank, int nprocs, int file_ptr_type, + } + + MPI_Type_get_extent(fd->filetype, &lb, &filetype_extent); +- MPI_Type_size_x(fd->filetype, &filetype_sz); ++ MPI_Type_size_x(fd->filetype, (MPI_Count *)&filetype_sz); + if (filetype_extent == filetype_sz) { + flat_file_p = ADIOI_Add_contig_flattened(fd->filetype); + flat_file_p->blocklens[0] = memtype_sz*count; +--- a/ompi/mca/io/romio321/romio/adio/common/ad_read_coll.c ++++ b/ompi/mca/io/romio321/romio/adio/common/ad_read_coll.c +@@ -851,7 +851,7 @@ static void ADIOI_R_Exchange_data(ADIO_File fd, void *buf, ADIOI_Flatlist_node + others_req[i].lens[k] = partial_send[i]; + } + ADIOI_Type_create_hindexed_x(count[i], +- &(others_req[i].lens[start_pos[i]]), ++ (const MPI_Count *)&(others_req[i].lens[start_pos[i]]), + &(others_req[i].mem_ptrs[start_pos[i]]), + MPI_BYTE, &send_type); + /* absolute displacement; use MPI_BOTTOM in send */ +--- a/ompi/mca/io/romio321/romio/adio/common/ad_write_coll.c ++++ b/ompi/mca/io/romio321/romio/adio/common/ad_write_coll.c +@@ -610,7 +610,7 @@ static void ADIOI_W_Exchange_data(ADIO_File fd, void *buf, char *write_buf, + others_req[i].lens[k] = partial_recv[i]; + } + ADIOI_Type_create_hindexed_x(count[i], +- &(others_req[i].lens[start_pos[i]]), ++ (const MPI_Count *)&(others_req[i].lens[start_pos[i]]), + &(others_req[i].mem_ptrs[start_pos[i]]), + MPI_BYTE, recv_types+j); + /* absolute displacements; use MPI_BOTTOM in recv */ +--- a/ompi/mca/io/romio321/romio/mpi-io/get_bytoff.c ++++ b/ompi/mca/io/romio321/romio/mpi-io/get_bytoff.c +@@ -63,7 +63,7 @@ int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp) + MPIO_CHECK_NOT_SEQUENTIAL_MODE(adio_fh, myname, error_code); + /* --END ERROR HANDLING-- */ + +- ADIOI_Get_byte_offset(adio_fh, offset, disp); ++ ADIOI_Get_byte_offset(adio_fh, (ADIO_Offset)offset, (ADIO_Offset *)disp); + + fn_exit: + +--- a/ompi/mca/io/romio321/romio/mpi-io/get_posn.c ++++ b/ompi/mca/io/romio321/romio/mpi-io/get_posn.c +@@ -52,7 +52,7 @@ int MPI_File_get_position(MPI_File fh, MPI_Offset *offset) + MPIO_CHECK_NOT_SEQUENTIAL_MODE(adio_fh, myname, error_code); + /* --END ERROR HANDLING-- */ + +- ADIOI_Get_position(adio_fh, offset); ++ ADIOI_Get_position(adio_fh, (ADIO_Offset *)offset); + + fn_exit: + return MPI_SUCCESS; +--- a/ompi/mca/io/romio321/romio/mpi-io/get_posn_sh.c ++++ b/ompi/mca/io/romio321/romio/mpi-io/get_posn_sh.c +@@ -53,7 +53,8 @@ int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset) + + ADIOI_TEST_DEFERRED(adio_fh, myname, &error_code); + +- ADIO_Get_shared_fp(adio_fh, 0, offset, &error_code); ++ ++ ADIO_Get_shared_fp(adio_fh, 0, (ADIO_Offset *)offset, &error_code); + /* --BEGIN ERROR HANDLING-- */ + if (error_code != MPI_SUCCESS) + error_code = MPIO_Err_return_file(adio_fh, error_code); +--- a/ompi/mca/io/romio321/romio/mpi-io/seek.c ++++ b/ompi/mca/io/romio321/romio/mpi-io/seek.c +@@ -73,7 +73,7 @@ int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence) + break; + case MPI_SEEK_CUR: + /* find offset corr. to current location of file pointer */ +- ADIOI_Get_position(adio_fh, &curr_offset); ++ ADIOI_Get_position(adio_fh, (ADIO_Offset *)&curr_offset); + offset += curr_offset; + + /* --BEGIN ERROR HANDLING-- */ +@@ -94,7 +94,7 @@ int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence) + ADIOI_TEST_DEFERRED(adio_fh, "MPI_File_seek", &error_code); + + /* find offset corr. to end of file */ +- ADIOI_Get_eof_offset(adio_fh, &eof_offset); ++ ADIOI_Get_eof_offset(adio_fh, (ADIO_Offset *)&eof_offset); + offset += eof_offset; + + /* --BEGIN ERROR HANDLING-- */ +--- a/ompi/mca/io/romio321/romio/mpi-io/seek_sh.c ++++ b/ompi/mca/io/romio321/romio/mpi-io/seek_sh.c +@@ -101,7 +101,7 @@ int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence) + break; + case MPI_SEEK_CUR: + /* get current location of shared file pointer */ +- ADIO_Get_shared_fp(adio_fh, 0, &curr_offset, &error_code); ++ ADIO_Get_shared_fp(adio_fh, 0, (ADIO_Offset *)&curr_offset, &error_code); + /* --BEGIN ERROR HANDLING-- */ + if (error_code != MPI_SUCCESS) + { +@@ -130,7 +130,7 @@ int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence) + break; + case MPI_SEEK_END: + /* find offset corr. to end of file */ +- ADIOI_Get_eof_offset(adio_fh, &eof_offset); ++ ADIOI_Get_eof_offset(adio_fh, (ADIO_Offset *)&eof_offset); + offset += eof_offset; + /* --BEGIN ERROR HANDLING-- */ + if (offset < 0) +--- a/opal/mca/pmix/pmix3x/pmix/src/hwloc/hwloc.c ++++ b/opal/mca/pmix/pmix3x/pmix/src/hwloc/hwloc.c +@@ -638,7 +638,7 @@ static int find_hole(pmix_hwloc_vm_hole_kind_t hkind, + switch (hkind) { + case VM_HOLE_BEGIN: + fclose(file); +- return use_hole(0, begin, addrp, size); ++ return use_hole(0, begin, (unsigned long *)addrp, size); + + case VM_HOLE_AFTER_HEAP: + if (prevmkind == VM_MAP_HEAP && mkind != VM_MAP_HEAP) { +@@ -646,14 +646,14 @@ static int find_hole(pmix_hwloc_vm_hole_kind_t hkind, + * (there can be several of them consecutively). + */ + fclose(file); +- return use_hole(prevend, begin-prevend, addrp, size); ++ return use_hole(prevend, begin-prevend, (unsigned long *)addrp, size); + } + break; + + case VM_HOLE_BEFORE_STACK: + if (mkind == VM_MAP_STACK) { + fclose(file); +- return use_hole(prevend, begin-prevend, addrp, size); ++ return use_hole(prevend, begin-prevend, (unsigned long *)addrp, size); + } + break; + +@@ -705,7 +705,7 @@ static int find_hole(pmix_hwloc_vm_hole_kind_t hkind, + done: + fclose(file); + if (hkind == VM_HOLE_IN_LIBS || hkind == VM_HOLE_BIGGEST) { +- return use_hole(biggestbegin, biggestsize, addrp, size); ++ return use_hole(biggestbegin, biggestsize, (unsigned long *)addrp, size); + } + + return PMIX_ERROR; +--- a/orte/mca/rtc/hwloc/rtc_hwloc.c ++++ b/orte/mca/rtc/hwloc/rtc_hwloc.c +@@ -608,7 +608,7 @@ static int find_hole(orte_rtc_hwloc_vm_hole_kind_t hkind, + switch (hkind) { + case VM_HOLE_BEGIN: + fclose(file); +- return use_hole(0, begin, addrp, size); ++ return use_hole(0, begin, (unsigned long *)addrp, size); + + case VM_HOLE_AFTER_HEAP: + if (prevmkind == VM_MAP_HEAP && mkind != VM_MAP_HEAP) { +@@ -616,14 +616,14 @@ static int find_hole(orte_rtc_hwloc_vm_hole_kind_t hkind, + * (there can be several of them consecutively). + */ + fclose(file); +- return use_hole(prevend, begin-prevend, addrp, size); ++ return use_hole(prevend, begin-prevend, (unsigned long *)addrp, size); + } + break; + + case VM_HOLE_BEFORE_STACK: + if (mkind == VM_MAP_STACK) { + fclose(file); +- return use_hole(prevend, begin-prevend, addrp, size); ++ return use_hole(prevend, begin-prevend, (unsigned long *)addrp, size); + } + break; + +@@ -678,7 +678,7 @@ static int find_hole(orte_rtc_hwloc_vm_hole_kind_t hkind, + done: + fclose(file); + if (hkind == VM_HOLE_IN_LIBS || hkind == VM_HOLE_BIGGEST) { +- return use_hole(biggestbegin, biggestsize, addrp, size); ++ return use_hole(biggestbegin, biggestsize, (unsigned long *)addrp, size); + } + + return ORTE_ERROR; diff --git a/sys-cluster/openmpi/openmpi-4.1.4-r1.ebuild b/sys-cluster/openmpi/openmpi-4.1.4-r1.ebuild deleted file mode 100644 index 31ae4c8e66fa..000000000000 --- a/sys-cluster/openmpi/openmpi-4.1.4-r1.ebuild +++ /dev/null @@ -1,188 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -FORTRAN_NEEDED=fortran - -inherit cuda fortran-2 java-pkg-opt-2 multilib-minimal - -MY_P=${P/-mpi} -S=${WORKDIR}/${MY_P} - -IUSE_OPENMPI_FABRICS=" - openmpi_fabrics_ofed - openmpi_fabrics_knem" - -IUSE_OPENMPI_RM=" - openmpi_rm_pbs - openmpi_rm_slurm" - -IUSE_OPENMPI_OFED_FEATURES=" - openmpi_ofed_features_control-hdr-padding - openmpi_ofed_features_udcm - openmpi_ofed_features_rdmacm - openmpi_ofed_features_dynamic-sl" - -DESCRIPTION="A high-performance message passing library (MPI)" -HOMEPAGE="https://www.open-mpi.org" -SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha amd64 arm arm64 ~ia64 ~loong ~ppc ppc64 ~riscv sparc x86 ~amd64-linux" -IUSE="cma cuda cxx fortran ipv6 java libompitrace peruse romio valgrind - ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" - -REQUIRED_USE=" - openmpi_rm_slurm? ( !openmpi_rm_pbs ) - openmpi_rm_pbs? ( !openmpi_rm_slurm ) - openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" - -CDEPEND=" - !sys-cluster/mpich - !sys-cluster/mpich2 - !sys-cluster/nullmpi - >=dev-libs/libevent-2.0.22:=[${MULTILIB_USEDEP},threads(+)] - dev-libs/libltdl:0[${MULTILIB_USEDEP}] - >=sys-apps/hwloc-2.0.2:=[${MULTILIB_USEDEP}] - >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] - cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= ) - openmpi_fabrics_ofed? ( sys-cluster/rdma-core ) - openmpi_fabrics_knem? ( sys-cluster/knem ) - openmpi_rm_pbs? ( sys-cluster/torque ) - openmpi_rm_slurm? ( sys-cluster/slurm ) - openmpi_ofed_features_rdmacm? ( sys-cluster/rdma-core )" - -RDEPEND="${CDEPEND} - java? ( >=virtual/jre-1.8:* )" - -DEPEND="${CDEPEND} - java? ( >=virtual/jdk-1.8:* ) - valgrind? ( dev-debug/valgrind )" - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpi.h - /usr/include/openmpi/ompi/mpi/java/mpiJava.h - /usr/include/openmpi/mpiext/mpiext_cuda_c.h -) - -pkg_setup() { - fortran-2_pkg_setup - java-pkg-opt-2_pkg_setup - - elog - elog "OpenMPI has an overwhelming count of configuration options." - elog "Don't forget the EXTRA_ECONF environment variable can let you" - elog "specify configure options if you find them necessary." - elog -} - -src_prepare() { - default - - # Avoid test which ends up looking at system mounts - echo "int main() { return 0; }" > test/util/opal_path_nfs.c || die - - # Necessary for scalibility, see - # http://www.open-mpi.org/community/lists/users/2008/09/6514.php - echo 'oob_tcp_listen_mode = listen_thread' \ - >> opal/etc/openmpi-mca-params.conf || die -} - -multilib_src_configure() { - if use java; then - # We must always build with the right -source and -target - # flags. Passing flags to javac isn't explicitly supported here - # but we can cheat by overriding the configure test for javac. - export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" - fi - - local myconf=( - # configure takes a looooong time, but upstream currently force - # constriants on caching: - # https://github.com/open-mpi/ompi/blob/9eec56222a5c98d13790c9ee74877f1562ac27e8/config/opal_config_subdir.m4#L118 - # so no --cache-dir for now. - --enable-mpi-fortran=$(usex fortran all no) - --enable-orterun-prefix-by-default - --enable-pretty-print-stacktrace - - --sysconfdir="${EPREFIX}/etc/${PN}" - - --with-hwloc="${EPREFIX}/usr" - --with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)" - --with-libltdl="${EPREFIX}/usr" - --with-libevent="${EPREFIX}/usr" - --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" - - # Re-enable for 5.0! - # See https://github.com/open-mpi/ompi/issues/9697#issuecomment-1003746357 - # and https://bugs.gentoo.org/828123#c14 - --disable-heterogeneous - - $(use_enable cxx mpi-cxx) - $(use_enable ipv6) - $(use_enable libompitrace) - $(use_enable peruse) - $(use_enable romio io-romio) - - $(use_with cma) - - $(multilib_native_use_enable java mpi-java) - $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) - $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) - $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) - $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) - - $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) - $(multilib_native_use_with valgrind) - $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) - $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) - $(multilib_native_use_with openmpi_rm_pbs tm) - $(multilib_native_use_with openmpi_rm_slurm slurm) - ) - - CONFIG_SHELL="${BROOT}"/bin/bash ECONF_SOURCE="${S}" econf "${myconf[@]}" -} - -multilib_src_compile() { - emake V=1 -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/usr/include/mpif* "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm \ - "${ED}"/usr/include/mpif* \ - "${ED}"/usr/bin/mpif* \ - || die - fi -} - -multilib_src_install_all() { - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/mpif* "${ED}"/usr/include || die - fi - - # Remove la files, no static libs are installed and we have pkg-config - find "${ED}" -name '*.la' -delete || die - - if use java; then - local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar - java-pkg_dojar "${mpi_jar}" - # We don't want to install the jar file twice - # so let's clean after ourselves. - rm "${mpi_jar}" || die - fi - einstalldocs -} diff --git a/sys-cluster/openmpi/openmpi-4.1.5.ebuild b/sys-cluster/openmpi/openmpi-4.1.5.ebuild deleted file mode 100644 index ab2269364e29..000000000000 --- a/sys-cluster/openmpi/openmpi-4.1.5.ebuild +++ /dev/null @@ -1,166 +0,0 @@ -# Copyright 1999-2024 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=8 - -FORTRAN_NEEDED=fortran -inherit cuda fortran-2 multilib-minimal - -MY_P=${P/-mpi} - -IUSE_OPENMPI_FABRICS=" - openmpi_fabrics_ofed - openmpi_fabrics_knem" - -IUSE_OPENMPI_RM=" - openmpi_rm_pbs - openmpi_rm_slurm" - -IUSE_OPENMPI_OFED_FEATURES=" - openmpi_ofed_features_control-hdr-padding - openmpi_ofed_features_udcm - openmpi_ofed_features_rdmacm - openmpi_ofed_features_dynamic-sl" - -DESCRIPTION="A high-performance message passing library (MPI)" -HOMEPAGE="https://www.open-mpi.org" -SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" -S="${WORKDIR}/${MY_P}" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~ia64 ~loong ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux" -IUSE="cma cuda cxx fortran ipv6 libompitrace peruse romio valgrind - ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" - -REQUIRED_USE=" - openmpi_rm_slurm? ( !openmpi_rm_pbs ) - openmpi_rm_pbs? ( !openmpi_rm_slurm ) - openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) - openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" - -RDEPEND=" - !sys-cluster/mpich - !sys-cluster/mpich2 - !sys-cluster/nullmpi - >=dev-libs/libevent-2.0.22:=[${MULTILIB_USEDEP},threads(+)] - dev-libs/libltdl:0[${MULTILIB_USEDEP}] - >=sys-apps/hwloc-2.0.2:=[${MULTILIB_USEDEP}] - >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] - cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= ) - openmpi_fabrics_ofed? ( sys-cluster/rdma-core ) - openmpi_fabrics_knem? ( sys-cluster/knem ) - openmpi_rm_pbs? ( sys-cluster/torque ) - openmpi_rm_slurm? ( sys-cluster/slurm ) - openmpi_ofed_features_rdmacm? ( sys-cluster/rdma-core )" -DEPEND="${RDEPEND} - valgrind? ( dev-debug/valgrind )" - -MULTILIB_WRAPPED_HEADERS=( - /usr/include/mpi.h - /usr/include/openmpi/mpiext/mpiext_cuda_c.h -) - -pkg_setup() { - fortran-2_pkg_setup - - elog - elog "OpenMPI has an overwhelming count of configuration options." - elog "Don't forget the EXTRA_ECONF environment variable can let you" - elog "specify configure options if you find them necessary." - elog -} - -src_prepare() { - default - - # Avoid test which ends up looking at system mounts - echo "int main() { return 0; }" > test/util/opal_path_nfs.c || die - - # Necessary for scalibility, see - # http://www.open-mpi.org/community/lists/users/2008/09/6514.php - echo 'oob_tcp_listen_mode = listen_thread' \ - >> opal/etc/openmpi-mca-params.conf || die -} - -multilib_src_configure() { - local myconf=( - --disable-mpi-java - # configure takes a looooong time, but upstream currently force - # constriants on caching: - # https://github.com/open-mpi/ompi/blob/9eec56222a5c98d13790c9ee74877f1562ac27e8/config/opal_config_subdir.m4#L118 - # so no --cache-dir for now. - --enable-mpi-fortran=$(usex fortran all no) - --enable-orterun-prefix-by-default - --enable-pretty-print-stacktrace - - --sysconfdir="${EPREFIX}/etc/${PN}" - - --with-hwloc="${EPREFIX}/usr" - --with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)" - --with-libltdl="${EPREFIX}/usr" - --with-libevent="${EPREFIX}/usr" - --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" - - # Re-enable for 5.0! - # See https://github.com/open-mpi/ompi/issues/9697#issuecomment-1003746357 - # and https://bugs.gentoo.org/828123#c14 - --disable-heterogeneous - - $(use_enable cxx mpi-cxx) - $(use_enable ipv6) - $(use_enable libompitrace) - $(use_enable peruse) - $(use_enable romio io-romio) - - $(use_with cma) - - $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) - $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) - $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) - $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) - - $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) - $(multilib_native_use_with valgrind) - $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) - $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) - $(multilib_native_use_with openmpi_rm_pbs tm) - $(multilib_native_use_with openmpi_rm_slurm slurm) - ) - - CONFIG_SHELL="${BROOT}"/bin/bash ECONF_SOURCE="${S}" econf "${myconf[@]}" -} - -multilib_src_compile() { - emake V=1 -} - -multilib_src_install() { - default - - # fortran header cannot be wrapped (bug #540508), workaround part 1 - if multilib_is_native_abi && use fortran; then - mkdir "${T}"/fortran || die - mv "${ED}"/usr/include/mpif* "${T}"/fortran || die - else - # some fortran files get installed unconditionally - rm \ - "${ED}"/usr/include/mpif* \ - "${ED}"/usr/bin/mpif* \ - || die - fi -} - -multilib_src_install_all() { - # fortran header cannot be wrapped (bug #540508), workaround part 2 - if use fortran; then - mv "${T}"/fortran/mpif* "${ED}"/usr/include || die - fi - - # Remove la files, no static libs are installed and we have pkg-config - find "${ED}" -name '*.la' -delete || die - - einstalldocs -} diff --git a/sys-cluster/openmpi/openmpi-4.1.6.ebuild b/sys-cluster/openmpi/openmpi-4.1.6.ebuild index cd171b1263f5..6011e81b155b 100644 --- a/sys-cluster/openmpi/openmpi-4.1.6.ebuild +++ b/sys-cluster/openmpi/openmpi-4.1.6.ebuild @@ -4,7 +4,7 @@ EAPI=8 FORTRAN_NEEDED=fortran -inherit cuda fortran-2 multilib-minimal +inherit cuda flag-o-matic fortran-2 libtool multilib-minimal MY_P=${P/-mpi} @@ -24,7 +24,7 @@ IUSE_OPENMPI_OFED_FEATURES=" DESCRIPTION="A high-performance message passing library (MPI)" HOMEPAGE="https://www.open-mpi.org" -SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" +SRC_URI="https://download.open-mpi.org/release/open-mpi/v$(ver_cut 1-2)/${P}.tar.bz2" S="${WORKDIR}/${MY_P}" LICENSE="BSD" @@ -64,6 +64,10 @@ MULTILIB_WRAPPED_HEADERS=( /usr/include/openmpi/mpiext/mpiext_cuda_c.h ) +PATCHES=( + "${FILESDIR}/${PN}-4.1.6-incompatible-pointers.patch" +) + pkg_setup() { fortran-2_pkg_setup @@ -76,6 +80,7 @@ pkg_setup() { src_prepare() { default + elibtoolize # Avoid test which ends up looking at system mounts echo "int main() { return 0; }" > test/util/opal_path_nfs.c || die @@ -87,6 +92,15 @@ src_prepare() { } multilib_src_configure() { + # -Werror=lto-type-mismatch, -Werror=strict-aliasing + # The former even prevents successfully running ./configure, but both appear + # at `make` time as well. + # https://bugs.gentoo.org/913040 + # https://github.com/open-mpi/ompi/issues/12674 + # https://github.com/open-mpi/ompi/issues/12675 + append-flags -fno-strict-aliasing + filter-lto + local myconf=( --disable-mpi-java # configure takes a looooong time, but upstream currently force diff --git a/sys-cluster/openmpi/openmpi-5.0.3.ebuild b/sys-cluster/openmpi/openmpi-5.0.3.ebuild new file mode 100644 index 000000000000..4c3c9e8b32aa --- /dev/null +++ b/sys-cluster/openmpi/openmpi-5.0.3.ebuild @@ -0,0 +1,141 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=fortran +inherit cuda flag-o-matic fortran-2 libtool + +MY_P=${P/-mpi} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="https://www.open-mpi.org" +SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" +S="${WORKDIR}/${MY_P}" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 -arm -ppc -x86 ~amd64-linux" +IUSE="cma cuda fortran ipv6 peruse romio valgrind + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM}" + +REQUIRED_USE=" + openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) +" + +RDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + !sys-cluster/prrte + >=dev-libs/libevent-2.0.22:=[threads(+)] + >=sys-apps/hwloc-2.0.2:= + sys-cluster/pmix:= + >=sys-libs/zlib-1.2.8-r1 + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= ) + openmpi_fabrics_ofed? ( sys-cluster/rdma-core ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) +" +DEPEND="${RDEPEND} + valgrind? ( dev-debug/valgrind )" + +pkg_setup() { + fortran-2_pkg_setup + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + elibtoolize + + # Avoid test which ends up looking at system mounts + echo "int main() { return 0; }" > test/util/opal_path_nfs.c || die + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die +} + +src_configure() { + # -Werror=lto-type-mismatch, -Werror=strict-aliasing + # The former even prevents successfully running ./configure, but both appear + # at `make` time as well. + # https://bugs.gentoo.org/913040 + # https://github.com/open-mpi/ompi/issues/12674 + # https://github.com/open-mpi/ompi/issues/12675 + append-flags -fno-strict-aliasing + filter-lto + + local myconf=( + --disable-mpi-java + # configure takes a looooong time, but upstream currently force + # constriants on caching: + # https://github.com/open-mpi/ompi/blob/9eec56222a5c98d13790c9ee74877f1562ac27e8/config/opal_config_subdir.m4#L118 + # so no --cache-dir for now. + --enable-mpi-fortran=$(usex fortran all no) + --enable-prte-prefix-by-default + --enable-pretty-print-stacktrace + + --sysconfdir="${EPREFIX}/etc/${PN}" + + --with-hwloc=external + --with-libevent=external + + # Oiriginally supposed to be re-enabled for 5.0! + # See https://github.com/open-mpi/ompi/issues/9697#issuecomment-1003746357 + # and https://bugs.gentoo.org/828123#c14 + # + # However as of 5.0.3 the docs still say: + # + # As such, supporting data heterogeneity is a feature that has fallen + # into disrepair and is currently known to be broken in this release + # of Open MPI. + --disable-heterogeneous + + $(use_enable ipv6) + $(use_enable peruse) + $(use_enable romio io-romio) + + $(use_with cma) + + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) + $(use_with valgrind) + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) + $(use_with openmpi_rm_pbs tm) + $(use_with openmpi_rm_slurm slurm) + ) + + CONFIG_SHELL="${BROOT}"/bin/bash econf "${myconf[@]}" +} + +src_compile() { + emake V=1 +} + +src_test() { + emake -C test check +} + +src_install() { + default + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die +} diff --git a/sys-cluster/openmpi/openmpi-5.0.5.ebuild b/sys-cluster/openmpi/openmpi-5.0.5.ebuild new file mode 100644 index 000000000000..37b017e4483e --- /dev/null +++ b/sys-cluster/openmpi/openmpi-5.0.5.ebuild @@ -0,0 +1,142 @@ +# Copyright 1999-2024 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +FORTRAN_NEEDED=fortran +inherit cuda flag-o-matic fortran-2 libtool + +MY_P=${P/-mpi} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="https://www.open-mpi.org" +SRC_URI="https://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" +S="${WORKDIR}/${MY_P}" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 -arm ~arm64 -ppc ~ppc64 -x86 ~amd64-linux" +IUSE="cma cuda fortran ipv6 peruse romio valgrind + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM}" + +REQUIRED_USE=" + openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) +" + +RDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/nullmpi + >=dev-libs/libevent-2.0.22:=[threads(+)] + >=sys-apps/hwloc-2.0.2:= + sys-cluster/pmix:= + sys-cluster/prrte:= + >=sys-libs/zlib-1.2.8-r1 + cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= ) + openmpi_fabrics_ofed? ( sys-cluster/rdma-core ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) +" +DEPEND="${RDEPEND} + valgrind? ( dev-debug/valgrind )" + +pkg_setup() { + fortran-2_pkg_setup + + elog + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + elog +} + +src_prepare() { + default + elibtoolize + + # Avoid test which ends up looking at system mounts + echo "int main() { return 0; }" > test/util/opal_path_nfs.c || die + + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf || die +} + +src_configure() { + # -Werror=lto-type-mismatch, -Werror=strict-aliasing + # The former even prevents successfully running ./configure, but both appear + # at `make` time as well. + # https://bugs.gentoo.org/913040 + # https://github.com/open-mpi/ompi/issues/12674 + # https://github.com/open-mpi/ompi/issues/12675 + append-flags -fno-strict-aliasing + filter-lto + + local myconf=( + --disable-mpi-java + # configure takes a looooong time, but upstream currently force + # constriants on caching: + # https://github.com/open-mpi/ompi/blob/9eec56222a5c98d13790c9ee74877f1562ac27e8/config/opal_config_subdir.m4#L118 + # so no --cache-dir for now. + --enable-mpi-fortran=$(usex fortran all no) + --enable-prte-prefix-by-default + --enable-pretty-print-stacktrace + + --sysconfdir="${EPREFIX}/etc/${PN}" + + --with-hwloc=external + --with-libevent=external + --with-prrte=external + + # Oiriginally supposed to be re-enabled for 5.0! + # See https://github.com/open-mpi/ompi/issues/9697#issuecomment-1003746357 + # and https://bugs.gentoo.org/828123#c14 + # + # However as of 5.0.3 the docs still say: + # + # As such, supporting data heterogeneity is a feature that has fallen + # into disrepair and is currently known to be broken in this release + # of Open MPI. + --disable-heterogeneous + + $(use_enable ipv6) + $(use_enable peruse) + $(use_enable romio io-romio) + + $(use_with cma) + + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) + $(use_with valgrind) + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) + $(use_with openmpi_rm_pbs tm) + $(use_with openmpi_rm_slurm slurm) + ) + + CONFIG_SHELL="${BROOT}"/bin/bash econf "${myconf[@]}" +} + +src_compile() { + emake V=1 +} + +src_test() { + emake -C test check +} + +src_install() { + default + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}" -name '*.la' -delete || die +} |