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-rw-r--r--sci-biology/Manifest.gzbin22484 -> 22484 bytes
-rw-r--r--sci-biology/foldingathome/Manifest2
-rw-r--r--sci-biology/foldingathome/foldingathome-7.5.1-r3.ebuild140
-rw-r--r--sci-biology/psipred/Manifest2
-rw-r--r--sci-biology/psipred/psipred-3.4.ebuild56
-rw-r--r--sci-biology/rebase/Manifest14
-rw-r--r--sci-biology/rebase/rebase-1701.ebuild45
-rw-r--r--sci-biology/rebase/rebase-1702.ebuild45
-rw-r--r--sci-biology/rebase/rebase-1703.ebuild45
-rw-r--r--sci-biology/rebase/rebase-1704.ebuild45
-rw-r--r--sci-biology/rebase/rebase-1803.ebuild45
-rw-r--r--sci-biology/rebase/rebase-1806.ebuild45
-rw-r--r--sci-biology/rebase/rebase-1810.ebuild45
13 files changed, 0 insertions, 529 deletions
diff --git a/sci-biology/Manifest.gz b/sci-biology/Manifest.gz
index 0bdf90f90016..ae1e7797e851 100644
--- a/sci-biology/Manifest.gz
+++ b/sci-biology/Manifest.gz
Binary files differ
diff --git a/sci-biology/foldingathome/Manifest b/sci-biology/foldingathome/Manifest
index 777fac7f4591..404ba0cdaf8c 100644
--- a/sci-biology/foldingathome/Manifest
+++ b/sci-biology/foldingathome/Manifest
@@ -1,6 +1,4 @@
AUX 7.3/folding-conf.d 339 BLAKE2B 93a0b3672777ad737ce27694aaca547634c375e180ad3c28c3adb9cae2cb1c054ff9458ee1fe04b70fe9841ae67d41198bcecfc4826d05d5de8df2759bd80910 SHA512 6fd10dc938262c05831e68176e93a24869bb6991508bcc48ece487b701788026561d073025bd347cd77ede13ca26f6b284861f30b07becf72ea77e4db22867b3
-DIST fahclient_7.5.1-64bit-release.tar.bz2 3438239 BLAKE2B 69fb60cdd5356fe4f5ad1f106b67d078baf0394c5d3c474dff2f1ac840bcb31bfd9ca9a9c6112b9ee9497dcdc223732627a21c50b455e46c096a52587d5d229b SHA512 5f6f2f882d57fe53ad0a55b48f09fc3803af6aebbbf0e92be39477d4c4da92237d6edabec61dd8183678bdcfe3923ff9b0938647a77edc2c69ce8958defcfdf1
DIST fahclient_7.6.13-64bit-release.tar.bz2 3951134 BLAKE2B 2748b7c1987d166bdda08caf5ff2f331523ff519e24768cd7e111c6d3a93f54c10c88d8adbf733230b6c51547360135dbcb272e5d43fd06d01918481601382a1 SHA512 f39f2990d78d075e1061ceaff9453b703a000770a3422965b7b8a91d1814f8804837628d8a34be5afd914228ef787f699f2488523baad295a8d9c1e3bb4f35cf
-EBUILD foldingathome-7.5.1-r3.ebuild 4454 BLAKE2B 9103461fe2614c5494648827b461cc488e7345f3ad12d45ccda6c44c81de7f700120d582b3ab4371974a5a25a62626b535849e8bafa13ac577c59364102cb7a3 SHA512 4c1a451a5df2e2015594f266761d51b9ac0978711ce93f4bc922937a0fa474bdead787926541ad42d554130cf6168e367f8c090648d52951ca6b7f1533c042f2
EBUILD foldingathome-7.6.13.ebuild 4422 BLAKE2B 50f39d12b3c1bf23e94119a7d3a1434f7f44e1765ab77550e4561875be2e1b5b8ca1e00393ba1b218ebb12f54b4cc27721ee46586986b8771b8216ab6fe20e33 SHA512 1be3543d064a478e22abf386bdc634f5e63710aaada32fd035b4f5c1ef02bc01521a084430e9cc4fed17a677b51a62d811f5c74b1dca1b581b489f585d5d58ee
MISC metadata.xml 257 BLAKE2B c0d9bf845137c20d86333bbe5f6f7d27e5ae2edbdd6997f870a6678825b5494b8160a4dc5fba6221f252e1146c57d3237f3d7feb098a9beed9c272f57f30d708 SHA512 5be44a06c71b100dfe66effc1d12a9801f6daf2e252f74b6499528644db9b3dd00d51827a984817b78755e8d544f9c674c27c6a370c4c4414ce26a09b478b69b
diff --git a/sci-biology/foldingathome/foldingathome-7.5.1-r3.ebuild b/sci-biology/foldingathome/foldingathome-7.5.1-r3.ebuild
deleted file mode 100644
index cb7ce89a604b..000000000000
--- a/sci-biology/foldingathome/foldingathome-7.5.1-r3.ebuild
+++ /dev/null
@@ -1,140 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit versionator user systemd
-
-DESCRIPTION="Folding@Home is a distributed computing project for protein folding"
-HOMEPAGE="https://foldingathome.org/"
-SRC_URI="https://download.foldingathome.org/releases/public/release/fahclient/centos-6.7-64bit/v$(get_version_component_range 1-2)/fahclient_${PV}-64bit-release.tar.bz2"
-
-RESTRICT="mirror bindist strip"
-
-LICENSE="FAH-EULA-2014 FAH-special-permission"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""
-# Expressly listing all deps, as this is a binpkg and it is doubtful whether
-# i.e. uclibc or clang can provide what is necessary at runtime
-DEPEND="dev-util/patchelf"
-RDEPEND="app-arch/bzip2
- || (
- dev-libs/openssl-compat:1.0.0
- =dev-libs/openssl-1.0*:*
- )
- sys-devel/gcc
- sys-libs/glibc
- sys-libs/zlib
- acct-group/video
-"
-
-S="${WORKDIR}/fahclient_${PV}-64bit-release"
-
-QA_PREBUILT="opt/foldingathome/*"
-
-pkg_setup() {
- elog ""
- elog "Special permission is hereby granted to the Gentoo project to provide an"
- elog "automated installer package which downloads and installs the Folding@home client"
- elog "software. Permission is also granted for future Gentoo installer packages on the"
- elog "condition that they continue to adhere to all of the terms of the accompanying"
- elog "Folding@home license agreements and display this notice."
- elog "-- Vijay S. Pande, Stanford University, 07 May 2013"
- elog ""
- elog "(ref: http://foldingforum.org/viewtopic.php?f=16&t=22524&p=241992#p241992 )"
- elog ""
-
- enewgroup foldingathome
- enewuser foldingathome -1 -1 "${EPREFIX}"/opt/foldingathome video
-}
-
-src_install() {
- patchelf --set-rpath "${EPREFIX}/opt/foldingathome" FAHClient || die
- patchelf --set-rpath "${EPREFIX}/opt/foldingathome" FAHCoreWrapper || die
-
- dosym "../../usr/$(get_libdir)/libssl.so.1.0.0" /opt/foldingathome/libssl.so.10
- dosym "../../usr/$(get_libdir)/libcrypto.so.1.0.0" /opt/foldingathome/libcrypto.so.10
-
- exeinto /opt/foldingathome
- doexe {FAHClient,FAHCoreWrapper}
-
- insinto /opt/foldingathome
- doins sample-config.xml
-
- newconfd "${FILESDIR}"/7.3/folding-conf.d foldingathome
- cat <<EOF >"${T}"/fah-init
-#!/sbin/openrc-run
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-start_stop_daemon_args="--chdir \"${EPREFIX}/opt/foldingathome\""
-command="${EPREFIX}/opt/foldingathome/FAHClient"
-command_args="\${FOLD_OPTS}"
-command_user=foldingathome
-command_background=1
-pidfile="\${PIDFILE}"
-EOF
- newinitd "${T}"/fah-init foldingathome
-
- cat <<EOF >"${T}"/fah-init.service
-[Unit]
-Description=Folding@Home V7 Client
-Documentation=https://foldingathome.org
-
-[Service]
-Type=simple
-User=foldingathome
-Group=foldingathome
-Nice=19
-WorkingDirectory=${EPREFIX}/opt/foldingathome
-ExecStart=${EPREFIX}/opt/foldingathome/FAHClient --fork=false --pid=false --respawn=false --service=false
-NoNewPrivileges=yes
-PrivateTmp=yes
-ProtectControlGroups=yes
-ProtectSystem=full
-RestrictRealtime=true
-ProtectControlGroups=yes
-
-[Install]
-WantedBy=multi-user.target
-EOF
- systemd_newunit "${T}"/fah-init.service foldingathome.service
-
- fowners -R foldingathome:foldingathome /opt/foldingathome
-}
-
-pkg_postinst() {
- elog "To run Folding@home in the background at boot:"
- elog "(openrc)\trc-update add foldingathome default"
- elog "(systemd)\tsystemctl enable foldingathome"
- elog ""
- if [ ! -e "${EPREFIX}"/opt/foldingathome/config.xml ]; then
- elog "No config.xml file found -- please run"
- elog "emerge --config ${P} to configure your client, or specify"
- elog "all necessary runtime options in FOLD_OPTS within"
- elog "${EPREFIX}/etc/conf.d/foldingathome"
- elog ""
- fi
- if [[ -n ${REPLACING_VERSIONS} ]]; then
- elog "NOTE, the 'initfolding' helper script has been dropped, please"
- elog "use emerge --config ${P} or run FAHClient --configure directly"
- elog "and adjust file permissions and ownership yourself"
- elog ""
- fi
- elog "Please see ${EPREFIX}/opt/foldingathome/FAHClient --help for more details."
- einfo ""
- einfo "The original package maintainer encourages you to acquire a username and join team 36480."
- einfo "http://folding.stanford.edu/English/Download#ntoc2"
- einfo ""
-}
-
-pkg_postrm() {
- elog "Folding@home data files were not removed."
- elog "Remove them manually from ${EPREFIX}/opt/foldingathome"
-}
-
-pkg_config() {
- cd "${EPREFIX}"/opt/foldingathome || die
- su foldingathome -s /bin/sh -c "./FAHClient --configure"
-}
diff --git a/sci-biology/psipred/Manifest b/sci-biology/psipred/Manifest
index fa6d7469eacc..f55dab11c9d8 100644
--- a/sci-biology/psipred/Manifest
+++ b/sci-biology/psipred/Manifest
@@ -1,9 +1,7 @@
AUX 3.1-Makefile.patch 1103 BLAKE2B ba9c5a7f60d62d66d1cd5a5e9b0a68ffe5c99124d02eae1924ffe92ecb2d24d7224e5bd0b37db3cf17da4f39d3c8b6b53e04466da8976e71910b9dcea9bc59ab SHA512 6e0daf4478b5b992ed1647bf653320b18cd2582ca69ebe761654bd4bd9c9c46b7de183ae84a28582cb5543603362eb7eb6c306ff562c3ec18c292d89480fd127
AUX 3.1-path.patch 1128 BLAKE2B ea445427fe2ff574028b3d82ae353da5a1dfe3f5c7fade419287f6dc2e819471b4ec007dfee7cf71a1c958082a8dfa83acd5046208e0a7b16c07d90cdd68073f SHA512 e6201669db910f074bb13d1b781416d8d99300f328147cccd7755d5d6595b25aa45353f6da6566f225a067e94ab8ee41ea89bfd75cf2cdf2c076481707acf88c
AUX 3.2-fgets.patch 427 BLAKE2B dba911ef9d28c230e38d326336fa7adfae31ffafd225d525968f58b1013df2f5812b0c678f37576714c7bfa396c7378b2e1201f8c6b2bea844c2e042eea7c0ec SHA512 a8a59a765057e20b9c606b8e4d76b5657a9a06150247b426d939805547148ddc8a1cb4282e04bcdcd756bfa6df7bebffcc77b84f62c86be2f643069d2ff913bb
-DIST psipred3.4.tar.gz 1102416 BLAKE2B 9797f4181357bb26455253370aca39857c39a2c4bcd521b10a139784e6fd5dc9e14b76c11d99989ac33c3a01fb62807957f9969daa5ac9d928b0b4e83e943743 SHA512 1bc7ac41a213766139324540ba6952538f2890749ecf217d771b4ce59e25231857d38c237ea573674f11a82300750e9a3ff628ec0156864863a9528a144cd919
DIST psipred3.5.tar.gz 1101579 BLAKE2B 2fd86841cbc4bb86045b51f8283550832df8356ee88a6ef2c85281b5810debb23ac53652ddc5ffc9bd6f8e9e7248ce39ccee23400ff8fb49cd05b877d730b553 SHA512 a7b3f7d149f6a29cf0b48bdb900f6983d42af01132d8b54a7be88994d09fcf27dbe57115d41ec9654da6daf6898d5986d08fbdcefa3a4c81af0d358500cd40c2
DIST tdbdata.tar.gz 40241247 BLAKE2B c85a2fde9b29a14e1da27be1a7ea5fe1704f72b66cd79514dd50a3a0d2d8aab9341f7d5075f6d1896cefa54ca83948387b902b38780181777dc505a9a15b4aab SHA512 f96d7ffbb77e129251e27f62b7f099d944bacd14935e03fc52c9f0b262cce1ad477ad43520a93b407951fb8f5dd3ba2e27ff6b5ae8a637ec03bc02f8c7c3990c
-EBUILD psipred-3.4.ebuild 1215 BLAKE2B da6e40d6c96916d638aec4343a06be76705d0b0b729ab4332613e998539044780b76b94bdde12ebb01059ba1f5763c070dea0d13f2f1d934e1c3db1aaa4d2dab SHA512 8299f0b758e7192418794fcfaae2d81cc6b4f95dc0507b75b5aeac31c60318c9bfd7d0e9a307f23f163887ebe3af986b2c654d19e27bbf7d4111e56e46a1b649
EBUILD psipred-3.5.ebuild 1215 BLAKE2B da6e40d6c96916d638aec4343a06be76705d0b0b729ab4332613e998539044780b76b94bdde12ebb01059ba1f5763c070dea0d13f2f1d934e1c3db1aaa4d2dab SHA512 8299f0b758e7192418794fcfaae2d81cc6b4f95dc0507b75b5aeac31c60318c9bfd7d0e9a307f23f163887ebe3af986b2c654d19e27bbf7d4111e56e46a1b649
MISC metadata.xml 267 BLAKE2B 7cf386952842945148119de3263231db4d1046d5f54811f7e303ed8ec4d27cbc1960b99c92daf6f32e5b981c2fb9f50ec666be6193865d6e18541b7427a152a9 SHA512 91ab266d9ab24401bc0fec759c5b6cfcf44a3c5669fc31c7301d79770839bb5dfa0e155d949392ef06176b4a0b2c32b91b1b54b0027f972db61f0a5e54644403
diff --git a/sci-biology/psipred/psipred-3.4.ebuild b/sci-biology/psipred/psipred-3.4.ebuild
deleted file mode 100644
index 1fe4c6dced52..000000000000
--- a/sci-biology/psipred/psipred-3.4.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils prefix toolchain-funcs versionator
-
-#MY_P="${PN}$(delete_all_version_separators)"
-MY_P="${PN}${PV}"
-
-DESCRIPTION="Protein Secondary Structure Prediction"
-HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
-SRC_URI="
- http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz
- test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )"
-
-LICENSE="psipred"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
- app-shells/tcsh
- sci-biology/ncbi-tools
- sci-biology/update-blastdb"
-DEPEND=""
-
-S="${WORKDIR}"/${PN}
-
-src_prepare() {
- rm -f bin/*
- epatch \
- "${FILESDIR}"/3.1-Makefile.patch \
- "${FILESDIR}"/3.1-path.patch \
- "${FILESDIR}"/3.2-fgets.patch
- eprefixify runpsipred*
- emake -C src clean
-}
-
-src_compile() {
- emake -C src CC=$(tc-getCC)
-}
-
-src_install() {
- emake -C src DESTDIR="${D}" install
- dobin runpsipred* bin/* BLAST+/runpsipred*
- insinto /usr/share/${PN}
- doins -r data
- dodoc README
-}
-
-pkg_postinst() {
- elog "Please use the update_blastdb.pl in order to"
- elog "maintain your own local blastdb"
-}
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index ffd210cfa8a5..b89581fb86f7 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,17 +1,3 @@
-DIST rebase-1701.tar.xz 120604368 BLAKE2B 1160f494b4e8650fb8ab9144756642377322a2bc1dd7a031e265a378b58e2487cc7d3f49ca9cf343a5c259cccb1d9ff7fda45a9b5744ae1f88799c603740a3af SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb
-DIST rebase-1702.tar.xz 117583312 BLAKE2B 19089d5767c35da22fb95bac7bc030ef593b159dda04d512b053a84c1cb4947679c8304bcbcb9388256e92cb0056d16b1b2035efac6eae84831d6fa95bd41a2a SHA512 3bba0738840b966a0a58123f265de1951428c599f3af9c581e1becec17ba3a93233a231de0673dbb2dc0bb82d54096e0eed43846967bf232f412bb785ce3b23f
-DIST rebase-1703.tar.xz 122252304 BLAKE2B 26afca990e300a5c471f55b1a168b1930212a347b70dd3224a51894bb701540a27a0384bd250caee8e0d0dd4886c6664ab74b20bcfb71fd42d1c73ebf2ce6be6 SHA512 838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796
-DIST rebase-1704.tar.xz 124351900 BLAKE2B bdbda714cc07f744b56c83b80a1b0f0a724a990b200c615458852910f282761aaf37a312a388ec7fee94a62ead47e01ddca8b205f2ad05d780a299e7547206f7 SHA512 0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7
-DIST rebase-1803.tar.xz 152581448 BLAKE2B 7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2 SHA512 ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
-DIST rebase-1806.tar.xz 161844712 BLAKE2B 901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a SHA512 9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48
-DIST rebase-1810.tar.xz 173538148 BLAKE2B 4630d6a2addbb95e70cff73c8f81552545c81be2893dd9f38d19d8bc2fd7ecf4340441498187b654a05012d4dafbd5ad0634e3281f7aed1ee61618308a2325a5 SHA512 641ed61b14970e9804e98abab4e982aeaff378638730964ba162dffacea1c5869e4b1202462f422307d039e1bc6053403c801273f1ca9021c38f29e68a7bfae2
DIST rebase-1901.tar.xz 182532548 BLAKE2B 5ac8d26ab057bcd21dc9c57abeb226ac70cfabb156b48a51f820789626257be55bb21c9eb2099e6e55b1cfe3691480df0ec9b3f4b18b50ba2712b986c6d057b4 SHA512 1e3553e59c3520190754cb40bb0900e466d9ffd206e6460d3262a7d7d2af8aab0e28f3e60187665362824fa3730211c0e2119016ce5fed49095f9de46c7f25d4
-EBUILD rebase-1701.ebuild 1052 BLAKE2B da1b6a61d2ed830a9421862c5539a3cfd0a438c3068c2a00af55fba5f7b5d4c1a3ac9bb9c4d7fc8b3552b9c6cdb7651479c70fc81136ba02d1bee73693e53f8b SHA512 f5ebc17df3c888caebc01f66e813f0482279bfa89bf5ae67ebf67fc3ca6e762246cd40b35d6713510850a63e7322916b9dd8fb88c841b82c7a1734a562df494b
-EBUILD rebase-1702.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf
-EBUILD rebase-1703.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf
-EBUILD rebase-1704.ebuild 1091 BLAKE2B 221cc96837849c39c75edcac6179d29b4adbbbceb5a13317993cc23ae8d18c1e24f11cabe9515d99cdd978e75e2c1b635d866ba63aba7f1cb5a0e66a3b22165e SHA512 6b4d6cd81f35284ecee921ca02bf524d4774cc4d9115c50bcc594124d3ef3617db9802e0577a5402ceee0f139a674492e053c532a78cbad3879987b5574c4ebf
-EBUILD rebase-1803.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b
-EBUILD rebase-1806.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b
-EBUILD rebase-1810.ebuild 1091 BLAKE2B ef6b34c8ac22b17109044d8b483d9a7657a9df755f41d4ebb02cbf9756d0514be5c6ebabc67520df121cec563165351b42574d3e1e1300021f58531b45bce2cb SHA512 764e3bbf5537e6753d703dbdd03261ff82da63ad59ffd33a843254343a1677bfc321e322225bc514f949b91dfedc65dbae54ebfb05a73cd2ec70611f70fa954b
EBUILD rebase-1901.ebuild 1088 BLAKE2B 9364896661246fc5d46a524874f95e395d3648239e89d2de265356e4b949ecd275c4d3e808e7bd60af27aa95257c1a92deac21eb1258e87bb318ba25896c1ada SHA512 d0e971497259f6989f4bd73ee9a5719276e200372d943dbc6c9f9eec4de7e8d71ffa413b19b162c7b028332a82b516e572515bc9e9e0e638a39933b6fdd0a831
MISC metadata.xml 907 BLAKE2B 87023eda8004c64dbd6ec605dcc7cff07f247f5cbf140ee65932c1e80ace99be4f43f2e529b9569a0220e2e60e03e88ef323af1c0dbbbdbee5da0eb0e46ba5f2 SHA512 dfbf6a8c60f75b92b056f6dc5b74adfc588ab0b1edb48ba15a6516254a58b736f101036d8061ed2abd69ca202356f6653bdd578f1a94ae54e5f6df6cc2e5155f
diff --git a/sci-biology/rebase/rebase-1701.ebuild b/sci-biology/rebase/rebase-1701.ebuild
deleted file mode 100644
index a680fa1783bb..000000000000
--- a/sci-biology/rebase/rebase-1701.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1702.ebuild b/sci-biology/rebase/rebase-1702.ebuild
deleted file mode 100644
index 70694cf2ca8a..000000000000
--- a/sci-biology/rebase/rebase-1702.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1703.ebuild b/sci-biology/rebase/rebase-1703.ebuild
deleted file mode 100644
index 70694cf2ca8a..000000000000
--- a/sci-biology/rebase/rebase-1703.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1704.ebuild b/sci-biology/rebase/rebase-1704.ebuild
deleted file mode 100644
index 70694cf2ca8a..000000000000
--- a/sci-biology/rebase/rebase-1704.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1803.ebuild b/sci-biology/rebase/rebase-1803.ebuild
deleted file mode 100644
index e9944bde30fb..000000000000
--- a/sci-biology/rebase/rebase-1803.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1806.ebuild b/sci-biology/rebase/rebase-1806.ebuild
deleted file mode 100644
index e9944bde30fb..000000000000
--- a/sci-biology/rebase/rebase-1806.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1810.ebuild b/sci-biology/rebase/rebase-1810.ebuild
deleted file mode 100644
index e9944bde30fb..000000000000
--- a/sci-biology/rebase/rebase-1810.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
generated by cgit v1.2.3 (git 2.25.1) at 2024-09-27 22:23:27 +0000